Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-020-1941-7

https://doi.org/10.1186/s13059-020-1941-7

Genotyping structural variants in pangenome graphs using the vg toolkit

Cited by: 136
Author(s): Glenn Hickey, David Heller, Jean Monlong, Jonas Andreas Sibbesen, Jouni Sirén, Jordan M. Eizenga, Eric T. Dawson, Erik Garrison, Adam M. Novak, Benedict Paten
Published: almost 5 years ago

Software Mentions 9

cran: kmc

Kaplan-Meier Estimator with Constraints for Right Censored Data – a Recursive Computational Algorithm
Papers that mentioned: 8

cran: Platypus

Single-Cell Immune Repertoire and Gene Expression Analysis
Papers that mentioned: 218

pypi: bwa

Bwa: Simple Notification Sender(Discord, Slack, Gmail and Telegram)
Papers that mentioned: 989

pypi: Cactus

Static site generation and deployment.
Papers that mentioned: 32

pypi: jq

jq is a lightweight and flexible JSON processor.
Papers that mentioned: 4

pypi: Platypus

A minimal language
Papers that mentioned: 218

pypi: svtyper

Bayesian genotyper for structural variants
Papers that mentioned: 7

pypi: toil-vg

UC Santa Cruz Computational Genomics Lab's Toil-based VG pipeline
Papers that mentioned: 1

pypi: vg

Linear algebra for humans: a very good vector-geometry and linear-algebra toolbelt
Papers that mentioned: 34