Projects: pypi: svtyper
https://packages.ecosyste.ms/registries/pypi.org/packages/svtyper
Bayesian genotyper for structural variants
4 versions
Latest release: almost 7 years ago
248 downloads last month
Enhanced Analysis
Educational Contributors:
cc2qe@virginia.edu
idas@wustl.edu
dlarson@genome.wustl.edu
colbychiang@wustl.edu
aregier@genome.wustl.edu
delarson@wustl.edu
Repository Activity:
Repository Owner:
Ira Hall lab (organization)
Academic
Science Score: 100/100
Starting Score: 100 points
Bonuses:
-
+120
Educational commit emails
6 contributors with educational email addresses -
+20
Academic repository owner
Repository owned by academic institution -
+15
Institutional repository owner
Repository owned by research institution -
+10
Educational website
Repository owner has educational domain website
Penalties:
-
-10
PyPI ecosystem
General-purpose ecosystem
Very Likely Science (100)
Papers Mentioning svtyper 7
10.1186/s13059-020-1941-7
Genotyping structural variants in pangenome graphs using the vg toolkitCited by: 136
Author(s): Glenn Hickey, David Heller, Jean Monlong, Jonas Andreas Sibbesen, Jouni Sirén, Jordan M. Eizenga, Eric T. Dawson, Erik Garrison, Adam M. Novak, Benedict Paten
Software Mentions: 9
Published: over 6 years ago
10.1038/s12276-021-00583-1
High prevalence of TP53 loss and whole-genome doubling in early-onset colorectal cancerCited by: 11
Author(s): Jeong Eun Kim, Jaeyong Choi, Chang Ohk Sung, Yong Sang Hong, Sun Young Kim, Hyunjung Lee, Tae Won Kim, Jong‐Il Kim
Software Mentions: 4
Published: over 5 years ago
10.1371/journal.ppat.1008357
Insertion and deletion evolution reflects antibiotics selection pressure in a Mycobacterium tuberculosis outbreakCited by: 18
Author(s): Maxime Godfroid, Tal Dagan, Matthias Merker, Thomas A. Kohl, Roland Diel, Florian P. Maurer, Stefan Niemann, Anne Kupczok
Software Mentions: 3
Published: almost 6 years ago
10.1038/s41421-020-00239-w
A genome-wide association study for gut metagenome in Chinese adults illuminates complex diseasesCited by: 41
Author(s): Xiaomin Liu, Shanmei Tang, Zhong Huang, Xin Tong, Zhuye Jie, Qiuxia Ding, Dan Wang, Ruidong Guo, Liang Xiao, Xun Xu, Huanming Yang, Jian Wang, Yang Zong, Weibin Liu, Xiao Liu, Yong Zhang, Susanne Brix, Karsten Kristiansen, Yong Hou, Huijue Jia, Tao Zhang
Software Mentions: 3
Published: over 5 years ago
10.1186/s12864-021-07703-1
Detection of copy number variants in African goats using whole genome sequence dataCited by: 3
Author(s): Wilson Nandolo, Gábor Mészáros, María Wurzinger, Liveness Jessica Banda, Timothy Gondwe, Henry Mulindwa, Helen N. Nakimbugwe, Emily L. Clark, M. Jennifer Woodward-Greene, Mei Liu, George E. Liu, Curtis P. Van Tassell, Benjamin D. Rosen, Johann Sölkner
Software Mentions: 3
Published: about 5 years ago
10.1093/gigascience/giz040
Duphold: scalable, depth-based annotation and curation of high-confidence structural variant callsCited by: 41
Author(s): Brent S. Pedersen, Aaron R. Quinlan
Software Mentions: 3
Published: over 7 years ago
10.3389/fgene.2021.647400
Identification of Deep-Intronic Splice Mutations in a Large Cohort of Patients With Inherited Retinal DiseasesCited by: 27
Author(s): Xinye Qian, Jun Wang, Meng Wang, Austin D. Igelman, Kaylie Webb‐Jones, Yumei Li, Keqing Wang, Kerry Goetz, David G. Birch, Paul Yang, Mark E. Pennesi, Rui Chen
Software Mentions: 2
Published: over 5 years ago