Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: svtyper

https://packages.ecosyste.ms/registries/pypi.org/packages/svtyper

Bayesian genotyper for structural variants
4 versions
Latest release: about 5 years ago
248 downloads last month

Papers Mentioning svtyper 7

Genotyping structural variants in pangenome graphs using the vg toolkit
Cited by: 136
Author(s): Glenn Hickey, David Heller, Jean Monlong, Jonas Andreas Sibbesen, Jouni Sirén, Jordan M. Eizenga, Eric T. Dawson, Erik Garrison, Adam M. Novak, Benedict Paten
Software Mentions: 9
Published: almost 5 years ago

10.1038/s12276-021-00583-1

High prevalence of TP53 loss and whole-genome doubling in early-onset colorectal cancer
Cited by: 11
Author(s): Jeong Eun Kim, Jaeyong Choi, Chang Ohk Sung, Yong Sang Hong, Sun Young Kim, Hyunjung Lee, Tae Won Kim, Jong‐Il Kim
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.ppat.1008357

Insertion and deletion evolution reflects antibiotics selection pressure in a Mycobacterium tuberculosis outbreak
Cited by: 18
Author(s): Maxime Godfroid, Tal Dagan, Matthias Merker, Thomas A. Kohl, Roland Diel, Florian P. Maurer, Stefan Niemann, Anne Kupczok
Software Mentions: 3
Published: about 4 years ago

10.1038/s41421-020-00239-w

A genome-wide association study for gut metagenome in Chinese adults illuminates complex diseases
Cited by: 41
Author(s): Xiaomin Liu, Shanmei Tang, Zhong Huang, Xin Tong, Zhuye Jie, Qiuxia Ding, Dan Wang, Ruidong Guo, Liang Xiao, Xun Xu, Huanming Yang, Jian Wang, Yang Zong, Weibin Liu, Xiao Liu, Yong Zhang, Susanne Brix, Karsten Kristiansen, Yong Hou, Huijue Jia, Tao Zhang
Software Mentions: 3
Published: almost 4 years ago

10.1186/s12864-021-07703-1

Detection of copy number variants in African goats using whole genome sequence data
Cited by: 3
Author(s): Wilson Nandolo, Gábor Mészáros, María Wurzinger, Liveness Jessica Banda, Timothy Gondwe, Henry Mulindwa, Helen N. Nakimbugwe, Emily L. Clark, M. Jennifer Woodward-Greene, Mei Liu, George E. Liu, Curtis P. Van Tassell, Benjamin D. Rosen, Johann Sölkner
Software Mentions: 3
Published: over 3 years ago

10.1093/gigascience/giz040

Duphold: scalable, depth-based annotation and curation of high-confidence structural variant calls
Cited by: 41
Author(s): Brent S. Pedersen, Aaron R. Quinlan
Software Mentions: 3
Published: over 5 years ago

10.3389/fgene.2021.647400

Identification of Deep-Intronic Splice Mutations in a Large Cohort of Patients With Inherited Retinal Diseases
Cited by: 27
Author(s): Xinye Qian, Jun Wang, Meng Wang, Austin D. Igelman, Kaylie Webb‐Jones, Yumei Li, Keqing Wang, Kerry Goetz, David G. Birch, Paul Yang, Mark E. Pennesi, Rui Chen
Software Mentions: 2
Published: over 3 years ago