Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: kmc

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/kmc

Kaplan-Meier Estimator with Constraints for Right Censored Data – a Recursive Computational Algorithm
5 versions
Latest release: almost 2 years ago
246 downloads last month

Papers Mentioning kmc 8

Genotyping structural variants in pangenome graphs using the vg toolkit
Cited by: 136
Author(s): Glenn Hickey, David Heller, Jean Monlong, Jonas Andreas Sibbesen, Jouni Sirén, Jordan M. Eizenga, Eric T. Dawson, Erik Garrison, Adam M. Novak, Benedict Paten
Software Mentions: 9
Published: almost 5 years ago

10.1128/mBio.01527-20

A Genome-Based Model to Predict the Virulence of Pseudomonas aeruginosa Isolates
Cited by: 11
Author(s): Nathan B. Pincus, Egon A. Ozer, Jonathan P. Allen, M. Nguyen, James J. Davis, Deborah R. Winter, Chih Hsien Chuang, Cheng-Hsun Chiu, Laura Zamorano, Antonio Oliver, Alan R. Hauser
Software Mentions: 9
Published: about 4 years ago

10.1186/s13059-021-02265-7

ReSeq simulates realistic Illumina high-throughput sequencing data
Cited by: 7
Author(s): Stephan Schmeing, Mark D. Robinson
Software Mentions: 7
Published: almost 4 years ago

10.1186/s13059-021-02475-z

LeafGo: Leaf to Genome, a quick workflow to produce high-quality de novo plant genomes using long-read sequencing technology
Cited by: 11
Author(s): Patrick Driguez, Salim Bougouffa, Karen Carty, Alexander Putra, Kamel Jabbari, M. Venkat Ram Reddy, Richard Soppe, Ming Sin Cheung, Yoshinori Fukasawa, Luca Ermini
Software Mentions: 3
Published: about 3 years ago

10.1093/bioinformatics/btv120

IVA: accurate <i>de novo</i> assembly of RNA virus genomes
Cited by: 169
Author(s): Martin Hunt, Astrid Gall, Swee Hoe Ong, Jacqui Brener, Bridget Ferns, Philip Goulder, Eleni Nastouli, Jacqueline A. Keane, Paul Kellam, Thomas D. Otto
Software Mentions: 2
Published: over 9 years ago

10.3389/fmicb.2020.02067

KmerGO: A Tool to Identify Group-Specific Sequences With k-mers
Cited by: 6
Author(s): Ying Wang, Qi Chen, Chao Deng, Yiluan Zheng, Fengzhu Sun
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-020-60320-y

Whole genome sequencing reveals extended natural transformation in Campylobacter impacting diagnostics and the pathogens adaptive potential
Cited by: 21
Author(s): Julia C. Golz, Lennard Epping, Marie-Theres Knüver, Maria Blettner, Felix Hartkopf, Carlus Deneke, Burkhard Malorny, Torsten Semmler, Kerstin Stingl
Software Mentions: 1
Published: over 4 years ago

10.1099/mgen.0.000164

PlasmidTron: assembling the cause of phenotypes and genotypes from NGS data
Cited by: 5
Author(s): Andrew J. Page, Alexander M. Wailan, Yan Shao, Kim Judge, Gordon Dougan, Elizabeth J. Klemm, Nicholas R. Thomson, Jacqueline A. Keane
Software Mentions: 1
Published: over 6 years ago