Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: predictor
https://packages.ecosyste.ms/registries/pypi.org/packages/predictor
Serve up scikit-learn models for prediction
3 versions
Latest release: about 5 years ago
288 downloads last month
Papers Mentioning predictor 34
10.1186/1471-2164-12-192
FungalRV: adhesin prediction and immunoinformatics portal for human fungal pathogensCited by: 64
Author(s): Rupanjali Chaudhuri, Faraz Alam Ansari, Muthukurussi Varieth Raghunandanan, Srinivasan Ramachandran
Software Mentions: 4
Published: over 13 years ago
10.1016/j.cell.2013.06.040
Genome Sequencing Reveals Loci under Artificial Selection that Underlie Disease Phenotypes in the Laboratory RatCited by: 148
Author(s): Santosh S. Atanur, Ana García Díaz, Klio Maratou, Allison B. Sarkis, Maxime Rotival, Laurence Gamé, Michael Tschannen, Pamela J. Kaisaki, G. Otto, Man Chun John, Thomas M. Keane, Oliver Hummel, Kathrin Saar, Weiwei Chen, Victor Guryev, Kathirvel Gopalakrishnan, Michael R. Garrett, Bina Joe, Lorena Citterio, Giuseppe Bianchi, Martin W. McBride, Anna F. Dominiczak, David J. Adams, Tadao Serikawa, Paul Flicek, Edwin Cuppen, Norbert Hübner, Enrico Petretto, Dominique Guyader, Anne E. Kwitek, Howard J. Jacob, Timothy J. Aitman
Software Mentions: 3
Published: over 11 years ago
10.1016/j.celrep.2019.11.023
Raptor-Mediated Proteasomal Degradation of Deamidated 4E-BP2 Regulates Postnatal Neuronal Translation and NF-κB ActivityCited by: 6
Author(s): Stella Kouloulia, Erik I. Hallin, Konstanze Simbriger, Inês S. Amorim, Gilliard Lach, Theoklitos Amvrosiadis, Kleanthi Chalkiadaki, Agniete Kampaite, Vinh Tai Truong, Mehdi Hooshmandi, Seyed Mehdi Jafarnejad, Paul Skehel, Petri Kursula, Arkady Khoutorsky, Christos G. Gkogkas
Software Mentions: 3
Published: almost 5 years ago
10.1002/ece3.3834
Wrong, but useful: regional species distribution models may not be improved by range‐wide data under biased samplingCited by: 53
Author(s): Ahmed El‐Gabbas, Carsten F. Dormann
Software Mentions: 3
Published: almost 7 years ago
10.1371/journal.pone.0187926
Rare genetic variants in the endocannabinoid system genes CNR1 and DAGLA are associated with neurological phenotypes in humansCited by: 51
Author(s): Douglas R. Smith, Christine M. Stanley, Theodore Foss, Richard G. Boles, Kevin McKernan
Software Mentions: 3
Published: almost 7 years ago
10.1371/journal.pone.0242684
Complex genetic dependencies among growth and neurological phenotypes in healthy children: Towards deciphering developmental mechanismsCited by: 8
Author(s): Lisa Uechi, Mahjoubeh Jalali, Jayson D. Wilbur, Jonathan French, N L Jumbe, Michael J. Meaney, Peter D. Gluckman, Neerja Karnani, Nikita A. Sakhanenko, David J. Galas
Software Mentions: 3
Published: almost 4 years ago
10.1371/journal.pone.0155370
Improved Species-Specific Lysine Acetylation Site Prediction Based on a Large Variety of Features SetCited by: 26
Author(s): Qiqige Wuyun, Wei Zheng, Yanping Zhang, Jishou Ruan, Gang Hu
Software Mentions: 2
Published: over 8 years ago
10.1186/s13073-015-0235-2
Clinical metagenomic identification of Balamuthia mandrillaris encephalitis and assembly of the draft genome: the continuing case for reference genome sequencingCited by: 97
Author(s): Alexander L. Greninger, Kevin Messacar, Thelma H. Dunnebacke, Samia N. Naccache, Scot Federman, Jérôme Bouquet, David M. Mirsky, Yoshihiko Nomura, Shigeo Yagi, Carol Glaser, Michael Vollmer, Craig A. Press, Bette K. Kleinschmidt‐DeMasters, Samuel R. Dominguez, Charles Y. Chiu
Software Mentions: 2
Published: almost 9 years ago
10.1186/s12864-015-1570-9
Comparative genome analysis of Pseudogymnoascus spp. reveals primarily clonal evolution with small genome fragments exchanged between lineagesCited by: 12
Author(s): Evgeny Leushkin, Maria D. Logacheva, Aleksey A. Penin, Roman A. Sutormin, Evgeny S. Gerasimov, Г. А. Кочкина, N. E. Ivanushkina, O. V. Vasilenko, Alexey S. Kondrashov, S. M. Ozerskaya
Software Mentions: 2
Published: over 9 years ago
10.1371/journal.pcbi.1007291
Patient Dossier: Healthcare queries over distributed resourcesCited by: 2
Author(s): Miguél Vázquez, Alfonso Valencia
Software Mentions: 2
Published: about 5 years ago
10.1371/journal.pone.0032658
Membrane Topology and Predicted RNA-Binding Function of the ‘Early Responsive to Dehydration (ERD4)’ Plant ProteinCited by: 30
Author(s): Archana Rai, Penna Suprasanna, S.F. D’Souza, Vinay Kumar
Software Mentions: 2
Published: over 12 years ago
10.1186/s12859-020-03617-z
Large-scale prediction and analysis of protein sub-mitochondrial localization with DeepMitoCited by: 7
Author(s): Castrense Savojardo, Pier Luigi Martelli, Gabriele Tartari, Rita Casadio
Software Mentions: 2
Published: about 4 years ago
10.1371/journal.pone.0169910
Predicting the Metabolic Sites by Flavin-Containing Monooxygenase on Drug Molecules Using SVM Classification on Computed Quantum Mechanics and Circular Fingerprints Molecular DescriptorsCited by: 7
Author(s): Fu Chien-wei, Thy‐Hou Lin
Software Mentions: 2
Published: almost 8 years ago
10.18632/genesandcancer.207
Variant profiles of genes mapping to chromosome 16q loss in Wilms tumors reveals link to cilia-related genes and pathwaysCited by: 1
Author(s): Eiko Kitamura, John K. Cowell, Chang Sheng Chang, Lesleyann Hawthorn
Software Mentions: 1
Published: about 4 years ago
10.1093/gbe/evy054
Signatures of Long-Term Balancing Selection in Human GenomesCited by: 95
Author(s): Bárbara Domingues Bitarello, Cesare de Filippo, João C. Teixeira, Joshua M. Schmidt, Philip Kleinert, Diogo Meyer, Aida M. Andrés
Software Mentions: 1
Published: over 6 years ago
10.1186/1758-2946-6-29
Cytochrome P450 site of metabolism prediction from 2D topological fingerprints using GPU accelerated probabilistic classifiersCited by: 26
Author(s): Jonathan D. Tyzack, Hamse Y. Mussa, Mark J. Williamson, Johannes Kirchmair, Robert C. Glen
Software Mentions: 1
Published: over 10 years ago
10.1038/srep09909
Prediction of novel alloy phases of Al with Sc or TaCited by: 23
Author(s): Ante Bilić, Julian D. Gale, Mark Gibson, Nick Wilson, Katherine McGregor
Software Mentions: 1
Published: over 9 years ago
10.1038/srep45281
Bivariate genomic analysis identifies a hidden locus associated with bacteria hypersensitive response in Arabidopsis thalianaCited by: 2
Author(s): Biao Wang, Zhuocheng Li, Weilin Xu, Xiao Feng, Qianhui Wan, Yanjun Zan, Sitong Sheng, Xia Shen
Software Mentions: 1
Published: over 7 years ago
10.1038/s41598-018-24445-5
Identification of human glycosyltransferase genes expressed in erythroid cells predicts potential carbohydrate blood group lociCited by: 9
Author(s): Magnus Jöud, Mattias Möller, Martin L. Olsson
Software Mentions: 1
Published: over 6 years ago
10.1155/2021/5521411
Diversification of Pakistani Amelogenin-Y-Null Male HaplotypesCited by: 0
Author(s): Nasir Siddique, Ahmad Ali Shahid, Kalsoom Sughra
Software Mentions: 1
Published: over 3 years ago
10.1186/s40478-016-0381-9
Amyloid-β 1–24 C-terminal truncated fragment promotes amyloid-β 1–42 aggregate formation in the healthy brainCited by: 29
Author(s): Sonia Mazzitelli, Fabia Filipello, Marco Rasile, Eliana Lauranzano, Chiara Starvaggi Cucuzza, Matteo Tamborini, Davide Pozzi, Isabella Barajon, Toni Giorgino, Antonino Natalello, Michela Matteoli
Software Mentions: 1
Published: about 8 years ago
10.1016/j.jprot.2016.04.023
The effects of PPO activity on the proteome of ingested red clover and implications for improving the nutrition of grazing cattleCited by: 18
Author(s): Elizabeth H. Hart, Lucy A. Onime, Teresa Davies, Russell M. Morphew, Alison H. Kingston‐Smith
Software Mentions: 1
Published: over 8 years ago
10.1186/1471-2148-8-168
Unique motifs identify PIG-A proteins from glycosyltransferases of the GT4 familyCited by: 3
Author(s): Nupur Oswal, Narinder Singh Sahni, Alok Bhattacharya, Sneha Sudha Komath, Rohini Muthuswami
Software Mentions: 1
Published: over 16 years ago
10.1186/s12864-019-6171-6
Analysis of functional variants in mitochondrial DNA of Finnish athletesCited by: 7
Author(s): Jukka Kiiskilä, Jukka S. Moilanen, Laura Kytövuori, Anna Kaisa Niemi, Kari Majamaa
Software Mentions: 1
Published: about 5 years ago
10.1186/1471-2164-9-364
Whole genome transcription profiling of Anaplasma phagocytophilum in human and tick host cells by tiling array analysisCited by: 82
Author(s): Curtis M. Nelson, Michael J. Herron, Roderick F. Felsheim, Brian R Schloeder, Suzanne Grindle, Adela S. Oliva Chávez, Timothy J. Kurtti, Ulrike G. Munderloh
Software Mentions: 1
Published: over 16 years ago
10.1186/s12879-018-3626-3
First insights on the genetic diversity of MDR Mycobacterium tuberculosis in LebanonCited by: 6
Author(s): Balig Panossian, Tamara Salloum, George F. Araj, Georges Khazen, Sima Tokajian
Software Mentions: 1
Published: almost 6 years ago
10.1186/s12881-020-01153-4
NGS-based expanded carrier screening for genetic disorders in North Indian population reveals unexpected results – a pilot studyCited by: 9
Author(s): Kanika Singh, Sunita Bijarnia-Mahay, Vedam Ramprasad, Ratna Dua Puri, Sandhya Nair, Sheetal Sharda, Renu Saxena, Sudha Kohli, Samarth Kulshreshtha, Indrani Ganguli, Kanwal Gujral, Ishwar C. Verma
Software Mentions: 1
Published: about 4 years ago
10.1007/s00335-018-9735-x
Population genetic diversity in zebrafish linesCited by: 35
Author(s): Michele R Balik-Meisner, Lisa Truong, Elizabeth H. Scholl, Robert L. Tanguay, David M. Reif
Software Mentions: 1
Published: almost 7 years ago
10.3390/md14070129
Spotlight on Antimicrobial Metabolites from the Marine Bacteria Pseudoalteromonas: Chemodiversity and Ecological SignificanceCited by: 118
Author(s): Clément Offret, Florie Desriac, Patrick Le Chevalier, Jérôme Mounier, Camille Jégou, Yannick Fleury
Software Mentions: 1
Published: over 8 years ago
10.1155/2020/4070419
Molecular Mechanisms Contributing Bacterial Infections to the Incidence of Various Types of CancerCited by: 27
Author(s): Salah A. Sheweita, Awad S. Alsamghan
Software Mentions: 1
Published: over 4 years ago
10.3390/molecules15096106
Heterocyclic Analogues of Xanthone and Xanthione. 1H-Pyrano[2,3-c:6,5-c]dipyrazol-4(7H)-ones and Thiones: Synthesis and NMR DataCited by: 19
Author(s): Barbara Datterl, Nicole Tröstner, Dorota Kucharski, W. Hölzer
Software Mentions: 1
Published: about 14 years ago
10.1186/1743-422X-6-173
Characterization of untranslated regions of the salmonid alphavirus 3 (SAV3) genome and construction of a SAV3 based repliconCited by: 23
Author(s): Marius Karlsen, Stéphane Villoing, Espen Rimstad, Are Nylund
Software Mentions: 1
Published: about 15 years ago
10.1371/journal.pone.0182138
Exploring public genomics data for population pharmacogenomicsCited by: 31
Author(s): Kleanthi Lakiotaki, Alexandros Kanterakis, Evgenia Kartsaki, Θεοδώρα Κάτσιλα, George P. Patrinos, George Potamias
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0006052
Evidence for the Concerted Evolution between Short Linear Protein Motifs and Their Flanking RegionsCited by: 33
Author(s): Claudia Chica, Francesca Diella, Toby J. Gibson
Software Mentions: 1
Published: over 15 years ago