pypi: graphviz | Projects | Ecosyste.ms: Papers

10.3390/e22020203

An Analysis of Smart Contracts Security Threats Alongside Existing Solutions
Cited by: 18
Author(s): Antonio López Vivar, Alberto Turégano Castedo, Ana Lucila Sandoval Orozco, Luis Javier García Villalba
Software Mentions: 13
Published: over 4 years ago

10.1093/molbev/msaa128

Evolution of the Insecticide Target Rdl in African Anopheles Is Driven by Interspecific and Interkaryotypic Introgression
Cited by: 25
Author(s): Xavier Grau‐Bové, Sean Tomlinson, Andrias O. O’Reilly, Nicholas J. Harding, Alistair Miles, Dominic Kwiatkowski, Martin Donnelly, David Weetman
Software Mentions: 12
Published: over 4 years ago

10.1371/journal.pone.0225900

PyRates—A Python framework for rate-based neural simulations
Cited by: 10
Author(s): Richard Gast, Daniel Rose, Christoph Salomon, Harald E. Möller, Nikolaus Weiskopf, Thomas R. Knösche
Software Mentions: 12
Published: almost 5 years ago

10.1093/bioinformatics/btw763

ontologyX: a suite of R packages for working with ontological data
Cited by: 66
Author(s): Daniel Greene, Sylvia Richardson, Ernest Turro
Software Mentions: 9
Published: over 7 years ago

10.26508/lsa.202101113

Statistical guidelines for quality control of next-generation sequencing techniques
Cited by: 1
Author(s): Maximilian Sprang, Matteo Krüger, Miguel A. Andrade‐Navarro, Jean-Fred Fontaine
Software Mentions: 8
Published: about 3 years ago

10.1371/journal.pgen.1009253

Resistance to pirimiphos-methyl in West African Anopheles is spreading via duplication and introgression of the Ace1 locus
Cited by: 22
Author(s): Xavier Grau‐Bové, Eric R. Lucas, Dimitra Pipini, Emily J. Rippon, Arjèn Emiel van 't Hof, Constant Edi, Samuel Dadzie, Alexander Egyir-Yawson, John Essandoh, Joseph Chabi, Luc Djogbénou, Nicholas J. Harding, Alistair Miles, Dominic P. Kwiatkowski, Martin J. Donnelly, David Weetman
Software Mentions: 8
Published: over 3 years ago

10.1186/1471-2105-8-S6-S8

Graphs in molecular biology
Cited by: 108
Author(s): Wolfgang Huber, Vincent J. Carey, Long Li, Seth Falcon, Robert Gentleman
Software Mentions: 7
Published: about 17 years ago

10.1038/s42003-021-02553-9

QSPcc reduces bottlenecks in computational model simulations
Cited by: 2
Author(s): Danilo Tomasoni, Alessio Paris, Stefano Giampiccolo, Federico Reali, Giulia Simoni, Luca Marchetti, Chanchala Kaddi, Susana Neves-Zaph, Corrado Priami, Karim Azer, Rosario Lombardo
Software Mentions: 7
Published: about 3 years ago

10.1038/s10038-019-0687-0

Visualization tools for human structural variations identified by whole-genome sequencing
Cited by: 8
Author(s): Toshiyuki Yokoyama, Masahiro Kasahara
Software Mentions: 7
Published: almost 5 years ago

10.3389/fcell.2021.562908

FOntCell: Fusion of Ontologies of Cells
Cited by: 0
Author(s): Javier Cabau-Laporta, Alex M. Ascensión, Mikel Arrospide-Elgarresta, Daniela Gerovska, Marcos J. Araúzo‐Bravo
Software Mentions: 6
Published: over 3 years ago

10.1186/s12859-020-03917-4

ped_draw: pedigree drawing with ease
Cited by: 2
Author(s): Matt Velinder, Dillon Lee, Gábor Marth
Software Mentions: 5
Published: almost 4 years ago

10.1093/gbe/evu251

Diversity and Variability of NOD-Like Receptors in Fungi
Cited by: 77
Author(s): Witold Dyrka, Marina Lamacchia, Pascal Durrens, Boštjan Kobe, Asen Daskalov, Mathieu Paoletti, David James Sherman, Sven J. Saupe
Software Mentions: 5
Published: almost 10 years ago

10.1186/1471-2105-11-213

BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions
Cited by: 505
Author(s): Jan Schellenberger, Junyoung O. Park, Tom M Conrad, Bernhard Ø. Palsson
Software Mentions: 4
Published: over 14 years ago

10.1186/1471-2105-13-209

Bio.Phylo: A unified toolkit for processing, analyzing and visualizing phylogenetic trees in Biopython
Cited by: 116
Author(s): Eric Talevich, Brandon M. Invergo, Peter J. A. Cock, Brad Chapman
Software Mentions: 4
Published: about 12 years ago

10.1371/journal.ppat.1003754

The Effects of Somatic Hypermutation on Neutralization and Binding in the PGT121 Family of Broadly Neutralizing HIV Antibodies
Cited by: 165
Author(s): Devin Sok, Uri Laserson, Jonathan Laserson, Yiping Liu, François Vigneault, Jean-Philippe Julien, Bryan Briney, Alejandra Ramos, Karen Saye, Khoa Le, Alison E. Mahan, Shenshen Wang, Mehran Kardar, Gur Yaari, Laura M. Walker, Birgitte B. Simen, Elizabeth St. John, Po-Ying Chan-Hui, Kristine M. Swiderek, Stephen H. Kleinstein, Galit Alter, Michael S. Seaman, Arup K. Chakraborty, Daphne Koller, Ian A. Wilson, George M. Church, Dennis R. Burton, Pascal Poignard
Software Mentions: 3
Published: almost 11 years ago

10.1111/eva.12142

Long‐distance gene flow outweighs a century of local selection and prevents local adaptation in the Irish famine pathogen<i><scp>P</scp>hytophthora infestans</i>
Cited by: 11
Author(s): Isabelle Glais, Josselin Montarry, Roselyne Corbière, Claudine Pasco, Bruno Marquer, Hélène Magalon, Didier Andrivon
Software Mentions: 3
Published: over 10 years ago

10.12688/f1000research.9751.2

dot-app: a Graphviz-Cytoscape conversion plug-in
Cited by: 1
Author(s): Braxton Fitts, Ziran Zhang, Massoud Maher, Barry Demchak
Software Mentions: 3
Published: about 7 years ago

10.1038/s41598-021-90566-z

Identification of risk groups for mental disorders, headache and oral behaviors in adults during the COVID-19 pandemic
Cited by: 24
Author(s): Mieszko Więckiewicz, Dariusz Danel, Maciej Pondel, Joanna Smardz, Helena Martynowicz, Tomasz Wieczorek, Grzegorz Mazur, Robert Pudło, Gniewko Więckiewicz
Software Mentions: 3
Published: over 3 years ago

10.3390/s20236860

A Lightweight Three-Factor Authentication Scheme for WHSN Architecture
Cited by: 11
Author(s): Abdullah M. Almuhaideb, Kawther S. Alqudaihi
Software Mentions: 3
Published: almost 4 years ago

10.1186/1471-2105-6-211

stam – a Bioconductor compliant R package for structured analysis of microarray data
Cited by: 3
Author(s): Claudio Lottaz, Rainer Spang
Software Mentions: 2
Published: about 19 years ago

10.3390/cells2030506

Spatial Rule-Based Modeling: A Method and Its Application to the Human Mitotic Kinetochore
Cited by: 29
Author(s): Bashar Ibrahim, Richard Henze, Gerd Gruenert, Matthew Egbert, Jan Huwald, Peter Dittrich
Software Mentions: 2
Published: about 11 years ago

10.1186/1471-2164-12-636

Employing machine learning for reliable miRNA target identification in plants
Cited by: 32
Author(s): Ashwani Jha, Ravi Shankar
Software Mentions: 2
Published: almost 13 years ago

10.1038/s41598-021-84504-2

Machine learning-based prediction model using clinico-pathologic factors for papillary thyroid carcinoma recurrence
Cited by: 13
Author(s): Young Min Park, Byung‐Joo Lee
Software Mentions: 2
Published: over 3 years ago

10.1186/1472-6947-7-3

A UMLS-based spell checker for natural language processing in vaccine safety
Cited by: 26
Author(s): Herman D. Tolentino, Michael D. Matters, Wikke Walop, Barbara Law, Wesley Tong, Fang Liu, Paul Fontelo, Katrin Kohl, Daniel C. Payne
Software Mentions: 2
Published: over 17 years ago

10.1186/s12879-017-2648-6

Modular programming for tuberculosis control, the “AuTuMN” platform
Cited by: 21
Author(s): James M. Trauer, Romain Ragonnet, Tan Doan, Emma S. McBryde
Software Mentions: 2
Published: about 7 years ago

10.1186/1471-2105-8-235

A transversal approach to predict gene product networks from ontology-based similarity
Cited by: 56
Author(s): Julie Chabalier, Jean Mosser, Anita Burgun
Software Mentions: 1
Published: about 17 years ago

10.1371/journal.pone.0050085

Non Linear Programming (NLP) Formulation for Quantitative Modeling of Protein Signal Transduction Pathways
Cited by: 15
Author(s): Alexander Mitsos, Ioannis N. Melas, Melody K. Morris, Julio Sáez-Rodríguez, Douglas A. Lauffenburger, Leonidas G. Alexopoulos
Software Mentions: 1
Published: almost 12 years ago

10.1186/s12864-019-5922-8

Long reads reveal the diversification and dynamics of CRISPR reservoir in microbiomes
Cited by: 7
Author(s): Tony J. Lam, Yuzhen Ye
Software Mentions: 1
Published: about 5 years ago

10.1186/1471-2164-9-310

Meta-Analysis Approach identifies Candidate Genes and associated Molecular Networks for Type-2 Diabetes Mellitus
Cited by: 56
Author(s): Axel Rasche, Hadi Al‐Hasani, Ralf Herwig
Software Mentions: 1
Published: over 16 years ago

10.3389/fmicb.2020.607735

Probiotic Lactobacillus rhamnosus GG Promotes Mouse Gut Microbiota Diversity and T Cell Differentiation
Cited by: 32
Author(s): Chunwei Shi, Mingyang Cheng, Xin Yang, Yiyuan Lu, Hong-duo Yin, Yan Zeng, Ruyu Wang, Yanlong Jiang, Wentao Yang, Jianzhong Wang, Dandan Zhao, Haibin Huang, Liping Ye, Xin Cao, Guilian Yang, Chunfeng Wang
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-018-36873-4

Stratification of amyotrophic lateral sclerosis patients: a crowdsourcing approach
Cited by: 42
Author(s): Robert Kueffner, Neta Zach, Maya Bronfeld, Raquel Norel, Nazem Atassi, Venkat Balagurusamy, Barbara Di Camillo, Adriano Chiò, Merit Cudkowicz, Donna Dillenberger, Javier Garcı́a-Garcı́a, Orla Hardiman, Bruce Hoff, Joshua Knight, Melanie Leitner, Guang Li, Lara M. Mangravite, Thea Norman, Liuxia Wang, Jinfeng Xiao, Wen-Chieh Fang, Jian Peng, Hsih-Te Yang, Huan-Jui Chang, Gustavo Stolovitzky
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pgen.0020191

Inference of Splicing Regulatory Activities by Sequence Neighborhood Analysis
Cited by: 68
Author(s): Michael Stadler, Noam Shomron, G Yeo, Aniket Schneider, Xinshu Xiao, Christopher B. Burge
Software Mentions: 1
Published: over 18 years ago

Ecosyste.ms: Papers

Projects: pypi: graphviz

Papers Mentioning graphviz 32