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Papers: 10.1093/bioinformatics/btw763

https://doi.org/10.1093/bioinformatics/btw763

ontologyX: a suite of R packages for working with ontological data

Cited by: 66
Author(s): Daniel Greene, Sylvia Richardson, Ernest Turro
Published: over 9 years ago

Software Mentions 9

bioconductor: GOSemSim
GO-terms Semantic Similarity Measures
Papers that mentioned: 118
Very Likely Science (90)
bioconductor: GOSim
Computation of functional similarities between GO terms and gene products; GO enrichment analysis
Papers that mentioned: 41
Very Likely Science (100)
bioconductor: graph
graph: A package to handle graph data structures
Papers that mentioned: 45
Very Likely Science (90)
bioconductor: Rgraphviz
Provides plotting capabilities for R graph objects
Papers that mentioned: 33
Very Likely Science (100)
cran: ontologyIndex
Reading Ontologies into R
Papers that mentioned: 3
Very Likely Science (83)
cran: ontologyPlot
Visualising Sets of Ontological Terms
Papers that mentioned: 2
Very Likely Science (83)
cran: ontologySimilarity
Calculating Ontological Similarities
Papers that mentioned: 2
Very Likely Science (83)
pypi: graph
Directed and undirected graph data structures and algorithms.
Papers that mentioned: 45
Very Likely Science (90)
pypi: graphviz
Simple Python interface for Graphviz
Papers that mentioned: 32
Very Likely Science (100)