Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1093/bioinformatics/btw763

https://doi.org/10.1093/bioinformatics/btw763

ontologyX: a suite of R packages for working with ontological data

Cited by: 66
Author(s): Daniel Greene, Sylvia Richardson, Ernest Turro
Published: almost 8 years ago

Software Mentions 9

bioconductor: GOSemSim
GO-terms Semantic Similarity Measures
Papers that mentioned: 118
bioconductor: GOSim
Computation of functional similarities between GO terms and gene products; GO enrichment analysis
Papers that mentioned: 41
bioconductor: graph
graph: A package to handle graph data structures
Papers that mentioned: 45
bioconductor: Rgraphviz
Provides plotting capabilities for R graph objects
Papers that mentioned: 33
cran: ontologyIndex
Reading Ontologies into R
Papers that mentioned: 3
cran: ontologyPlot
Visualising Sets of Ontological Terms
Papers that mentioned: 2
cran: ontologySimilarity
Calculating Ontological Similarities
Papers that mentioned: 2
pypi: graph
Directed and undirected graph data structures and algorithms.
Papers that mentioned: 45
pypi: graphviz
Simple Python interface for Graphviz
Papers that mentioned: 32