pypi: BATS | Projects | Ecosyste.ms: Papers

10.3389/fmicb.2015.00998

Meta-omic signatures of microbial metal and nitrogen cycling in marine oxygen minimum zones
Cited by: 47
Author(s): Jennifer B. Glass, Cécilia B. Kretz, Sangita Ganesh, Piyush Ranjan, Sherry L. Seston, Kristen N. Buck, William M. Landing, Peter L. Morton, James W. Moffett, Stephen J. Giovannoni, Kevin L. Vergin, Frank J. Stewart
Software Mentions: 4
Published: almost 9 years ago

10.1186/1471-2105-9-S2-S12

Time-course analysis of genome-wide gene expression data from hormone-responsive human breast cancer cells
Cited by: 30
Author(s): Margherita Mutarelli, Luigi Cicatiello, Lorenzo Ferraro, Olì Maria Victoria Grober, Maria Ravo, Angelo Facchiano, Claudia Angelini, Alessandro Weisz
Software Mentions: 4
Published: over 16 years ago

10.1371/journal.pone.0205968

MetaboClust: Using interactive time-series cluster analysis to relate metabolomic data with perturbed pathways
Cited by: 12
Author(s): Martin Rusilowicz, Mike Dickinson, Adrian J. Charlton, Simon O’Keefe, Julie Wilson
Software Mentions: 3
Published: almost 6 years ago

10.1186/1471-2105-9-415

BATS: a Bayesian user-friendly software for Analyzing Time Series microarray experiments
Cited by: 53
Author(s): Claudia Angelini, Luisa Cutillo, Daniela De Canditiis, Margherita Mutarelli, Marianna Pensky
Software Mentions: 3
Published: almost 16 years ago

10.1038/s41598-020-64939-9

Tracking the Near Eastern origins and European dispersal of the western house mouse
Cited by: 43
Author(s): Thomas Cucchi, Katerina Papayianni, Sophie Cersoy, Laetitia Aznar-Cormano, Antoine Zazzo, Régis Debruyne, Rémi Berthon, Adrian Bălășescu, Alan H. Simmons, François Valla, Yannis Hamilakis, Fanis Mavridis, Marjan Mashkour, Jamshid Darvish, Roohollah Siahsarvi, Fereidoun Biglari, Cameron A. Petrie, Lloyd Weeks, Alireza Sardari, Sepideh Maziar, Christiane Denys, David Orton, Emma Jenkins, Melinda A. Zeder, Jeremy B. Searle, Greger Larson, François Bonhomme, Jean‐Christophe Auffray, Jean‐Denis Vigne
Software Mentions: 3
Published: over 4 years ago

10.1186/1471-2105-15-327

tigaR: integrative significance analysis of temporal differential gene expression induced by genomic abnormalities
Cited by: 2
Author(s): Viktorian Miok, Saskia M. Wilting, Mark A. van de Wiel, Annelieke Jaspers, Paula I. van Noort, Ruud H. Brakenhoff, Peter J.F. Snijders, Renske D.M. Steenbergen, Wessel N. van Wieringen
Software Mentions: 2
Published: almost 10 years ago

10.1128/mSphere.00231-19

A Tripartite, Hierarchical Sigma Factor Cascade Promotes Hormogonium Development in the Filamentous Cyanobacterium Nostoc punctiforme
Cited by: 21
Author(s): Alfonso González, Kelsey W. Riley, Thomas V. Harwood, Esthefani G. Zuniga, Douglas D. Risser
Software Mentions: 2
Published: about 5 years ago

10.7554/eLife.46402

Improved characterisation of MRSA transmission using within-host bacterial sequence diversity
Cited by: 33
Author(s): Matthew Hall, Matthew T. G. Holden, Pramot Srisomang, Weera Mahavanakul, Vanaporn Wuthiekanun, Direk Limmathurotsakul, Kay Fountain, Julian Parkhill, Emma K. Nickerson, Sharon J. Peacock, Christophe Fraser
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pone.0037853

Phylogeography and Molecular Evolution of Potato virus Y
Cited by: 51
Author(s): José M. Cuevas, Agnès Delaunay, Johan Christiaan Visser, Baoheng Du, Emmanuel Jacquot, Santiago F. Elena
Software Mentions: 2
Published: over 12 years ago

10.1002/ece3.593

Patterns of ecological specialization among microbial populations in the Red Sea and diverse oligotrophic marine environments
Cited by: 40
Author(s): Luke R. Thompson, Chris Field, Tamara N. Romanuk, David Kamanda Ngugi, Rania Siam, Hamza El Dorry, Ulrich Stingl
Software Mentions: 2
Published: over 11 years ago

10.1155/2020/9130719

In Silico Identification of New Targets for Diagnosis, Vaccine, and Drug Candidates against Trypanosoma cruzi
Cited by: 5
Author(s): Rafael Obata Trevisan, Malu Mateus Santos Obata, Chamberttan Souza Desidério, Leandro Gomes Alves, Thiago de Jesus Sousa, Letícia de Castro Oliveira, Arun Kumar Jaiswal, Sandeep Tiwari, Weslley Guimarães Bovi, Mariana de Oliveira Silva, Juliana Cristina Costa-Madeira, Lúcio Roberto Cançado Castellano, Marcos Silva, Vasco Azevedo, Virmondés Rodrigues, Carlo José Freire Oliveira, Siomar de Castro Soares
Software Mentions: 2
Published: almost 4 years ago

10.1186/1471-2164-15-S7-S3

Proteome scale comparative modeling for conserved drug and vaccine targets identification in Corynebacterium pseudotuberculosis
Cited by: 25
Author(s): Syed Shah Hassan, Sandeep Tiwari, Luís Carlos Guimarães, Syed Babar Jamal, Edson Luiz Folador, Neha Barve Sharma, Siomar de Castro Soares, Síntia Almeida, Amjad Ali, Arshad Islam, Fabiana Dias Póvoa, Vinícius Augusto Carvalho de Abreu, Neha Jain, Antaripa Bhattacharya, Lucky Juneja, Anderson Miyoshi, Artur M. S. Silva, Debmalya Barh, Adrián Turjanski, Vasco Azevedo, Rafaela Salgado Ferreira
Software Mentions: 2
Published: almost 10 years ago

10.1186/1471-2105-14-310

A method to identify differential expression profiles of time-course gene data with Fourier transformation
Cited by: 12
Author(s): Jaehee Kim, R. Todd Ogden, Haseong Kim
Software Mentions: 2
Published: almost 11 years ago

10.1186/1471-2105-12-180

A Simple Approach to Ranking Differentially Expressed Gene Expression Time Courses through Gaussian Process Regression
Cited by: 86
Author(s): Freddie Kalaitzis, Neil D. Lawrence
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0037046

Transcriptional Programs Controlling Perinatal Lung Maturation
Cited by: 65
Author(s): Yan Xu, Yanhua Wang, Valérie Besnard, Machiko Ikegami, Susan E. Wert, Caleb Heffner, Stephen A. Murray, Leah Rae Donahue, Jeffrey A. Whitsett
Software Mentions: 2
Published: about 12 years ago

10.3390/ijms18020402

An In Silico Identification of Common Putative Vaccine Candidates against Treponema pallidum: A Reverse Vaccinology and Subtractive Genomics Based Approach
Cited by: 34
Author(s): Arun Kumar Jaiswal, Sandeep Tiwari, Syed Babar Jamal, Debmalya Barh, Vasco Azevedo, Siomar C. Soares
Software Mentions: 1
Published: over 7 years ago

10.1186/1748-7188-2-10

A basic analysis toolkit for biological sequences
Cited by: 8
Author(s): Raffaele Giancarlo, Alessandro Siragusa, Enrico Siragusa, Filippo Utro
Software Mentions: 1
Published: almost 17 years ago

10.1590/1678-9199-JVATITD-2020-0027

Reverse vaccinology and subtractive genomics approaches for identifying common therapeutics against Mycobacterium leprae and Mycobacterium lepromatosis
Cited by: 3
Author(s): Arun Kumar Jaiswal, Sandeep Tiwari, Syed Babar Jamal, Letícia de Castro Oliveira, Helioswilton Sales‐Campos, Leonardo Andrade-Silva, Carlo José Freire Oliveira, Preetam Ghosh, Debmalya Barh, Vasco Azevedo, Siomar C. Soares, Virmondés Rodrigues, Marcos Silva
Software Mentions: 1
Published: over 3 years ago

10.1186/1471-2148-13-249

Intra-specific variability and biological relevance of P3N-PIPO protein length in potyviruses
Cited by: 16
Author(s): Julia Hillung, Santiago F. Elena, José M. Cuevas
Software Mentions: 1
Published: almost 11 years ago

10.1186/1471-2164-11-610

Structural modelling and comparative analysis of homologous, analogous and specific proteins from Trypanosoma cruzi versus Homo sapiens: putative drug targets for chagas' disease treatment
Cited by: 43
Author(s): Priscila V. S. Z. Capriles, Ana Carolina Ramos Guimarães, Thomas D. Otto, Antônio Basílio de Miranda, Laurent E. Dardenne, Wim Degrave
Software Mentions: 1
Published: almost 14 years ago

10.1098/rsta.2013.0334

Slow science: the value of long ocean biogeochemistry records
Cited by: 21
Author(s): Stephanie A. Henson
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0186401

An integrative in-silico approach for therapeutic target identification in the human pathogen Corynebacterium diphtheriae
Cited by: 30
Author(s): Syed Babar Jamal, Syed Shah Hassan, Sandeep Tiwari, Marcus Vinícius Canário Viana, Leandro de Jesus Benevides, Asad Ullah, Adrián Turjanski, Debmalya Barh, Preetam Ghosh, Daniela Costa, Artur M. S. Silva, Richard Röttger, Jan Baumbach, Vasco Azevedo
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0115505

The Emergence of Mesolithic Cemeteries in SW Europe: Insights from the El Collado (Oliva, Valencia, Spain) Radiocarbon Record
Cited by: 45
Author(s): Juan Francisco Gibaja, M. Eulàlia Subirà, Xavier Terradas, Francisco Javier Andrés Santos, Lidia Agulló, Isabel Gómez-Martínez, Florence Allièse, Javier Fernández‐López de Pablo
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0016896

Dynamics of Molecular Evolution and Phylogeography of Barley yellow dwarf virus-PAV
Cited by: 39
Author(s): Beilei Wu, Alexandra Blanchard-Letort, Yan Liu, Ziyi Guo, Xifeng Wang, Santiago F. Elena
Software Mentions: 1
Published: over 13 years ago

10.3389/fgene.2018.00044

The Druggable Pocketome of Corynebacterium diphtheriae: A New Approach for in silico Putative Druggable Targets
Cited by: 5
Author(s): Syed Shah Hassan, Syed Babar Jamal, Leandro Radusky, Sandeep Tiwari, Asad Ullah, Ali Javed, Behramand, Paulo Vinícius Sanches Daltro de Carvalho, Rida Shams, Sabir Khan, Henrique César Pereira Figueiredo, Debmalya Barh, Preetam Ghosh, Artur M. S. Silva, Jan Baumbach, Richard Röttger, Adrián Turjanski, Vasco Azevedo
Software Mentions: 1
Published: over 6 years ago

10.3389/fgene.2020.01024

In silico Prediction of New Drug Candidates Against the Multidrug-Resistant and Potentially Zoonotic Fish Pathogen Serotype III Streptococcus agalactiae
Cited by: 2
Author(s): Leonardo Mantovani Favero, Roberta Torres Chideroli, Natália Amoroso Ferrari, Vasco Azevedo, Sandeep Tiwari, Nelson Maurício Lopera-Barrero, Ulisses de Pádua Pereira
Software Mentions: 1
Published: about 4 years ago

10.3390/insects11110794

Evaluation of the Models for Forecasting Dengue in Brazil from 2000 to 2017: An Ecological Time-Series Study
Cited by: 4
Author(s): Marcos Venícius Malveira de Lima, Gabriel Zorello Laporta
Software Mentions: 1
Published: almost 4 years ago

10.1098/rsos.190907

Reverse vaccinology and subtractive genomics reveal new therapeutic targets against <i>Mycoplasma pneumoniae</i> : a causative agent of pneumonia
Cited by: 29
Author(s): Thaís Cristina Vilela Rodrigues, Arun Kumar Jaiswal, Alissa de Sarom, Letícia de Castro Oliveira, Carlo José Freire Oliveira, Preetam Ghosh, Sandeep Tiwari, Fábio Miranda, Leandro de Jesus Benevides, Vasco Azevedo, Siomar de Castro Soares
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-017-07645-3

Radiocarbon dating minute amounts of bone (3–60 mg) with ECHoMICADAS
Cited by: 21
Author(s): Sophie Cersoy, Antoine Zazzo, Juan Rofes, Anne Tresset, Séverine Zirah, Caroline Gauthier, Évelyne Kaltnecker, François Thil, Nadine Tisnérat‐Laborde
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-019-41557-8

Pretreatment and gaseous radiocarbon dating of 40–100 mg archaeological bone
Cited by: 29
Author(s): Helen Fewlass, Thibaut Tuna, Yoann Fagault, Jean‐Jacques Hublin, Bernd Kromer, Édouard Bard, Sahra Talamo
Software Mentions: 1
Published: over 5 years ago

10.3390/s91108624

Understanding of Coupled Terrestrial Carbon, Nitrogen and Water Dynamics—An Overview
Cited by: 19
Author(s): Baozhang Chen, Nicholas C. Coops
Software Mentions: 1
Published: almost 15 years ago

10.3390/s18103343

BATS: Adaptive Ultra Low Power Sensor Network for Animal Tracking
Cited by: 29
Author(s): Niklas Duda, Thorsten Nowak, Markus Hartmann, Michael Schadhauser, Björn Cassens, Peter Wägemann, Muhammad Nabeel, Simon Ripperger, Sebastian Herbst, Klaus Meyer-Wegener, Frieder Mayer, Falko Dressler, Wolfgang Schröder-Preikschat, Rüdiger Kapitza, J. M. Robert, Jörn Thielecke, Robert Weigel, Alexander Koelpin
Software Mentions: 1
Published: almost 6 years ago

Ecosyste.ms: Papers

Projects: pypi: BATS

Papers Mentioning BATS 32