Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: ingenuity
https://packages.ecosyste.ms/registries/pypi.org/packages/ingenuity
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Latest release: almost 3 years ago
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Papers Mentioning ingenuity 32
10.1007/s10875-020-00908-1
Targeted Proteomics Reveals Inflammatory Pathways that Classify Immune Dysregulation in Common Variable ImmunodeficiencyCited by: 13
Author(s): Roos-Marijn Berbers, Julia Drylewicz, Pauline M. Ellerbroek, Joris M. van Montfrans, Virgil A. S. H. Dalm, P. Martin van Hagen, Baerbel Keller, Klaus Warnatz, Annick van de Ven, J.M. van Laar, Stefan Nierkens, Helen L. Leavis
Software Mentions: 13
Published: about 4 years ago
10.1111/acel.12769
Lifelong reduction in complex IV induces tissue-specific metabolic effects but does not reduce lifespan or healthspan in miceCited by: 11
Author(s): Sathyaseelan S. Deepa, Gavin Pharaoh, Michael Kinter, Vivian Diaz, Wilson C. Fok, Kaitlyn Riddle, Daniel Pulliam, Shauna Hill, Kathleen E. Fischer, Vanessa Soto, Constantin Georgescu, Jonathan D. Wren, Carlo Viscomi, Arlan Richardson, Holly Van Remmen
Software Mentions: 7
Published: over 6 years ago
10.1038/onc.2016.242
microRNAs with AAGUGC seed motif constitute an integral part of an oncogenic signaling networkCited by: 16
Author(s): Yan Zhou, Oliver Frings, Rui M. Branca, Jorrit Boekel, Carlos le Sage, Erik Fredlund, Reuven Agami, Lukas M. Orre
Software Mentions: 4
Published: over 8 years ago
10.1007/s00018-017-2695-6
Downregulation of p53 drives autophagy during human trophoblast differentiationCited by: 23
Author(s): Martin Gauster, Sabine Maninger, Monika Siwetz, Alexander Deutsch, Amin El‐Heliebi, Dagmar Kolb-Lenz, Ursula Hiden, Gernot Desoyé, Florian Herse, Andreas Prokesch
Software Mentions: 4
Published: about 7 years ago
10.1186/s12864-015-1431-6
Pervasive and opposing effects of Unpredictable Chronic Mild Stress (UCMS) on hippocampal gene expression in BALB/cJ and C57BL/6J mouse strainsCited by: 29
Author(s): Karim Malki, Yann S. Mineur, Maria Grazia Tosto, James Campbell, Priya Karia, Irfan Jumabhoy, Frans Sluyter, Wim E. Crusio, Leonard C. Schalkwyk
Software Mentions: 2
Published: over 9 years ago
10.1371/journal.pone.0047301
Early Immunologic Events at the Tick-Host InterfaceCited by: 45
Author(s): Dar Heinze, J. Russ Carmical, Judith F. Aronson, Saravanan Thangamani
Software Mentions: 2
Published: about 12 years ago
10.1002/2211-5463.12793
Id1 expression in kidney endothelial cells protects against diabetes‐induced microvascular injuryCited by: 5
Author(s): Smriti Sharma, Matthew Plotkin
Software Mentions: 2
Published: over 4 years ago
10.1186/1743-422X-10-279
Differential cellular gene expression in duck trachea infected with a highly or low pathogenic H5N1 avian influenza virusCited by: 5
Author(s): Pascale Massin, Claire Deléage, Aurélie Oger, François-Xavier Briand, Hélène Quenault, Yannick Blanchard
Software Mentions: 2
Published: about 11 years ago
10.3390/ijms21041303
The Oviductal Extracellular Vesicles’ RNA Cargo Regulates the Bovine Embryonic TranscriptomeCited by: 26
Author(s): Stefan Bauersachs, Pascal Mermillod, Carmen Almiñana
Software Mentions: 2
Published: almost 5 years ago
10.1038/srep30867
Ameloblastoma Phenotypes Reflected in Distinct Transcriptome ProfilesCited by: 7
Author(s): Shijia Hu, Joel S. Parker, Kimon Divaris, Ricardo Padilla, Valerie A. Murrah, J. Timothy Wright
Software Mentions: 2
Published: over 8 years ago
10.3389/fimmu.2019.02347
Zinc Chelation Specifically Inhibits Early Stages of Dengue Virus Replication by Activation of NF-κB and Induction of Antiviral Response in Epithelial CellsCited by: 29
Author(s): Meenakshi Kar, Naseem Ahmed Khan, Aleksha Panwar, Sachendra S. Bais, Soumen Basak, Renu Goel, Shailaja Sopory, Guruprasad R. Medigeshi
Software Mentions: 2
Published: about 5 years ago
10.1186/1471-2407-10-192
Interference with Activator Protein-2 transcription factors leads to induction of apoptosis and an increase in chemo- and radiation-sensitivity in breast cancer cellsCited by: 19
Author(s): Verena Thewes, Francesca Orso, Richard Jäger, Dawid Eckert, Sabine Schäfer, Gregor Kirfel, Stephan Garbe, Daniela Taverna, Hubert Schorle
Software Mentions: 2
Published: over 14 years ago
10.1111/jcmm.14710
Early moderate exercise benefits myocardial infarction healing via improvement of inflammation and ventricular remodelling in ratsCited by: 20
Author(s): Zhaofu Liao, Dan Li, Yilin Chen, Yunjian Li, Ruijin Huang, Kuikui Zhu, Hongyi Chen, Ziqiang Yuan, Xin Zheng, Hui Zhao, Pu Qin, Xufeng Qi, Dongqing Cai
Software Mentions: 2
Published: about 5 years ago
10.3389/fimmu.2014.00128
Genome-Wide Analysis of DNA Methylation, Copy Number Variation, and Gene Expression in Monozygotic Twins Discordant for Primary Biliary CirrhosisCited by: 29
Author(s): Carlo Selmi, Francesca Cavaciocchi, Ana Lleo, Cristina Cheroni, Raffaele De Francesco, Simone A. Lombardi, Maria De Santis, Francesca Meda, Maria Gabriella Raimondo, Chiara Crotti, Marco Folci, Luca Zammataro, Marlyn J. Mayo, Nancy Bach, Shinji Shimoda, Stuart C. Gordon, Monica Miozzo, Pietro Invernizzi, Mauro Podda, Rossana Scavelli, Michelle Martin, Michael F. Seldin, Janine M. LaSalle, M. Eric Gershwin
Software Mentions: 1
Published: over 10 years ago
10.3389/fphys.2018.00444
Saliva Proteomics Analysis Offers Insights on Type 1 Diabetes Pathology in a Pediatric PopulationCited by: 29
Author(s): Eftychia Pappa, Heleni Vastardis, George Mermelekas, Andriani Gerasimidi-Vazeou, Jérôme Zoidakis, Konstantinos Vougas
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-020-69228-z
Hepatocytic transcriptional signatures predict comparative drug interaction potential of rifamycin antibioticsCited by: 12
Author(s): Shetty Ravi Dyavar, Timothy M Mykris, Lee C. Winchester, Kimberly K Scarsi, Courtney V. Fletcher, Anthony T. Podany
Software Mentions: 1
Published: over 4 years ago
10.1186/s40246-015-0053-z
Copy number variation in CEP57L1 predisposes to congenital absence of bilateral ACL and PCL ligamentsCited by: 7
Author(s): Yichuan Liu, Yun Li, Michael March, Kenny Nguyen, Kexiang Xu, Fengxiang Wang, Yiran Guo, Brendan J. Keating, Joseph T. Glessner, Jiankang Li, Theodore J. Ganley, Jianguo Zhang, Matthew A. Deardorff, Xun Xu, Håkon Håkonarson
Software Mentions: 1
Published: about 9 years ago
10.3390/ijms20143406
Kidney Injury Molecule-1 Is Upregulated in Renal Lipotoxicity and Mediates Palmitate-Induced Tubular Cell Injury and Inflammatory ResponseCited by: 24
Author(s): Xueying Zhao, Xiaoming Chen, Yuanyuan Zhang, Jasmine George, Alyssa Cobbs, Guoshen Wang, Lingyun Li, Nerimiah Emmett
Software Mentions: 1
Published: over 5 years ago
10.18632/oncotarget.11348
Dynamics of PBMC gene expression in hepatitis C virus genotype 1-infected patients during combined peginterferon/ribavirin therapyCited by: 7
Author(s): Ming Lü, Ching‐I Huang, Ming‐Yen Hsieh, Tusty-Juan Hsieh, Edward Hsi, Pei‐Chien Tsai, Yi‐Shan Tsai, Ching‐Chih Lin, Meng‐Hsuan Hsieh, Po‐Cheng Liang, Yi‐Hung Lin, Nai‐Jen Hou, Ming‐Lun Yeh, Chung‐Feng Huang, Zu‐Yau Lin, Shinn‐Cherng Chen, Jee‐Fu Huang, Wan‐Long Chuang, Ming‐Lung Yu
Software Mentions: 1
Published: over 8 years ago
10.1186/1476-4598-7-8
An integrative model for recurrence in ovarian cancerCited by: 30
Author(s): Alexandros Laios, Sharon O’Toole, Richard Flavin, Cara Martin, Martina Ring, Noreen Gleeson, Tom D’Arcy, E. P. J. McGuinness, Orla Sheils, B. L. Sheppard, John J O' Leary
Software Mentions: 1
Published: almost 17 years ago
10.1186/s12985-016-0541-3
A glance at subgenomic flavivirus RNAs and microRNAs in flavivirus infectionsCited by: 39
Author(s): Lorena Bavia, Ana Luiza Pamplona Mosimann, Mateus Nóbrega Aoki, Claudia Nunes Duarte dos Santos
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pntd.0008884
Extracellular vesicles released from the filarial parasite Brugia malayi downregulate the host mTOR pathwayCited by: 19
Author(s): Alessandra Ricciardi, Sasisekhar Bennuru, Sameha Tariq, Sukhbir Kaur, Weiwei Wu, Abdel G. Elkahloun, Anush Arakelyan, Jahangheer Shaik, David W. Dorward, Thomas B. Nutman, Roshanak Tolouei Semnani
Software Mentions: 1
Published: almost 4 years ago
10.1371/journal.pone.0165102
Integrated Genomics Identifies miR-32/MCL-1 Pathway as a Critical Driver of Melanomagenesis: Implications for miR-Replacement and Combination TherapyCited by: 15
Author(s): Prasun Mishra, Pravin J. Mishra, Glenn Merlino
Software Mentions: 1
Published: about 8 years ago
10.1371/journal.pone.0089274
Transcription Factor Binding Site Analysis Identifies FOXO Transcription Factors as Regulators of the Cutaneous Wound Healing ProcessCited by: 21
Author(s): K. Markus Roupé, Srinivas Veerla, Joshua Olson, Erica L. Stone, Ole E. Sørensen, Stephen M. Hedrick, Victor Nizet
Software Mentions: 1
Published: almost 11 years ago
10.1371/journal.pone.0083955
Human Mammospheres Secrete Hormone-Regulated Active Extracellular VesiclesCited by: 13
Author(s): Esperanza Gónzalez, Marco Piva, Eva Rodríguez-Suárez, David Gil, Félix Royo, Félix Elortza, Juan Manuel Falcón‐Pérez, María dM Vivanco
Software Mentions: 1
Published: almost 11 years ago
10.1371/journal.pone.0050221
Gene Expression Profile of Peripheral Blood Lymphocytes from Renal Cell Carcinoma Patients Treated with IL-2, Interferon-α and Dendritic Cell VaccineCited by: 15
Author(s): Benita Wolf, Adrian Schwarzer, Anik L. Côté, Thomas H. Hampton, Thomas Schwaab, Eduardo Huarte, Craig R. Tomlinson, Jiang Gui, Jan L. Fisher, Camilo E. Fadul, Joshua W. Hamilton, Marc S. Ernstoff
Software Mentions: 1
Published: almost 12 years ago
10.1371/journal.pone.0016161
Profiling Early Lung Immune Responses in the Mouse Model of TuberculosisCited by: 111
Author(s): Dongwan Kang, Yinyao Lin, Javier Rangel-Moreno, Troy D. Randall, Shabaana A. Khader
Software Mentions: 1
Published: almost 14 years ago
10.3390/cancers13122851
Coordinating Effect of VEGFC and Oleic Acid Participates to Tumor LymphangiogenesisCited by: 2
Author(s): Florent Morfoisse, Fabienne de Toni, Jérémy Nigri, Mohsen Hosseini, Audrey Zamora, Florence Tatin, Françoise Pujol, Jean-Emmanuel Sarry, Dominique Langin, Éric Lacazette, Anne-Catherine Prats, Richard Tomasini, Jean Galitzky, Anne Bouloumié, Barbara Garmy‐Susini
Software Mentions: 1
Published: over 3 years ago
10.1016/j.ebiom.2015.06.013
Discovery and Validation of Predictive Biomarkers of Survival for Non-small Cell Lung Cancer Patients Undergoing Radical Radiotherapy: Two Proteins With Predictive ValueCited by: 24
Author(s): Michael J. Walker, Cong Zhou, Alison Backen, Maria Pernemalm, Andrew J.K. Williamson, Lynsey Priest, P. Koh, Corinne Faivre-Finn, Fiona Blackhall, Caroline Dive, Anthony D. Whetton
Software Mentions: 1
Published: over 9 years ago
10.3389/fgene.2012.00139
Gene Expression Profiling during Murine Tooth DevelopmentCited by: 19
Author(s): Maria A. Landin, Maziar Shabestari, Eshrat Babaie, Janne Elin Reseland, Harald Osmundsen
Software Mentions: 1
Published: almost 13 years ago
10.3389/fimmu.2021.639358
Transcriptional and Immunologic Correlates of Response to Pandemic Influenza Vaccine in Aviremic, HIV-Infected ChildrenCited by: 3
Author(s): Lesley R. de Armas, Valérie George, Abdelali Filali-Mouhim, Courtney Steel, Anita Parmigiani, Coleen K. Cunningham, Adriana Weinberg, Lydie Trautmann, Rafick Pierre Sékaly, Mark J. Cameron, Savita Pahwa
Software Mentions: 1
Published: over 3 years ago