Ecosyste.ms: Papers

10.12688/f1000research.8967.2

An end to end workflow for differential gene expression using Affymetrix microarrays
Cited by: 16
Author(s): Bernd Klaus, Stefanie Reisenauer
Software Mentions: 13
Published: about 6 years ago

10.3389/fpls.2020.01005

Similar Seed Composition Phenotypes Are Observed From CRISPR-Generated In-Frame and Knockout Alleles of a Soybean KASI Ortholog
Cited by: 8
Author(s): Kamaldeep S. Virdi, Madison Spencer, Adrian O. Stec, Yer Xiong, Ryan Merry, Gary J. Muehlbauer, Robert M. Stupar
Software Mentions: 5
Published: about 4 years ago

10.1186/s12915-021-01122-0

Single-cell analysis of cell fate bifurcation in the chordate Ciona
Cited by: 4
Author(s): Konner Winkley, Wendy Reeves, Michael Veeman
Software Mentions: 4
Published: about 3 years ago

10.1186/1471-2164-12-11

The SOX2 response program in glioblastoma multiforme: an integrated ChIP-seq, expression microarray, and microRNA analysis
Cited by: 142
Author(s): Xuefeng Fang, Jae-Geun Yoon, Lisha Li, Wei Yu, Jiaofang Shao, Dasong Hua, Suiping Zheng, Leroy Hood, David R. Goodlett, Gregory Foltz, Biaoyang Lin
Software Mentions: 3
Published: over 13 years ago

10.1371/journal.pone.0006589

Integrated Expression Profiling and ChIP-seq Analyses of the Growth Inhibition Response Program of the Androgen Receptor
Cited by: 73
Author(s): Biaoyang Lin, Jun Wang, Hong Xu, Xiaowei Yan, Daehee Hwang, Ji Hoon Cho, Danielle Yi, Angelita G. Utleg, Xuefeng Fang, Dustin E. Schones, Keji Zhao, Gilbert S. Omenn, Leroy Hood
Software Mentions: 2
Published: about 15 years ago

10.1186/1471-2164-11-408

Small RNAs, DNA methylation and transposable elements in wheat
Cited by: 86
Author(s): Dario Cantu, Leonardo Sebastián Vanzetti, Adam Sumner, Martin Dubcovsky, Marta Matvienko, Assaf Distelfeld, Richard W. Michelmore, Jorge Dubcovsky
Software Mentions: 2
Published: about 14 years ago

10.1186/s12879-016-1588-x

Human leptospirosis in Tanzania: sequencing and phylogenetic analysis confirm that pathogenic Leptospira species circulate among agro-pastoralists living in Katavi-Rukwa ecosystem
Cited by: 8
Author(s): Shabani K. Muller, Justine A. Assenga, Lucas E. Matemba, Gerald Misinzo, Rudovick Kazwala
Software Mentions: 2
Published: over 8 years ago

10.1186/gb-2012-13-9-r50

Functional analysis of transcription factor binding sites in human promoters
Cited by: 140
Author(s): Troy W. Whitfield, Jie Wang, Patrick J. Collins, E. Christopher Partridge, Shelley Force Aldred, Nathan D. Trinklein, R Myers, Zhiping Weng
Software Mentions: 2
Published: over 12 years ago

10.1186/1476-4598-12-130

miR-125b targets erythropoietin and its receptor and their expression correlates with metastatic potential and ERBB2/HER2 expression
Cited by: 74
Author(s): Manuela Ferracin, Cristian Bassi, Massimo Pedriali, Sara Pagotto, Lucilla D’Abundo, Barbara Zagatti, Fabio Corrà, Gentian Musa, Elisa Callegari, Laura Lupini, Stefano Volpato, Patrizia Querzoli, Massimo Negrini
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0101607

Tandem Repeats and G-Rich Sequences Are Enriched at Human CNV Breakpoints
Cited by: 42
Author(s): Promita Bose, Karen Hermetz, Karen N. Conneely, M. Katharine Rudd
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pone.0000834

Three-Dimensional Imaging of Drosophila melanogaster
Cited by: 63
Author(s): Leeanne McGurk, Harris Morrison, Liam P. Keegan, James Sharpe, Mary A. O’Connell
Software Mentions: 1
Published: about 17 years ago

10.1371/journal.pone.0232172

Larvicidal toxicity of Metarhizium anisopliae metabolites against three mosquito species and non-targeting organisms
Cited by: 28
Author(s): Perumal Vivekanandhan, Swathy Kannan, Dharman Kalaimurugan, Ramachandran Marimuthu, Ananthanarayanan Yuvaraj, Anup Kumar, Ayyavu Thendral Manikandan, Poovarasan Neelakandan, Muthugounder Subramanian Shivakumar, Eliningaya J. Kweka
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0204408

Phosphate solubilizing bacteria with glucose dehydrogenase gene for phosphorus uptake and beneficial effects on wheat
Cited by: 137
Author(s): Muhammad Suleman, Sumera Yasmin, Maria Rasul, Mahreen Yahya, Babar Manzoor Atta, Muhammad Nadeem Mirza
Software Mentions: 1
Published: almost 6 years ago

10.1016/j.cmi.2017.06.031

A novel genetic variant of Streptococcus pneumoniae serotype 11A discovered in Fiji
Cited by: 17
Author(s): Sam Manna, Belinda D. Ortika, Eileen M. Dunne, Kathryn E. Holt, Mike Kama, Fiona M. Russell, Jason Hinds, Catherine Satzke
Software Mentions: 1
Published: over 6 years ago

10.1155/2015/260101

The Effect of PAI-1 4G/5G Polymorphism and Clinical Factors on Coronary Artery Occlusion in Myocardial Infarction
Cited by: 11
Author(s): Tajinder Kumar Parpugga, Vacis Tatarūnas, Vilius Skipskis, Nora Kupstytė, Diana Žaliaduonytė-Pekšienė, Vaiva Lesauskaitė
Software Mentions: 1
Published: over 9 years ago

10.1080/20008686.2017.1328963

Emerging microbiota during cold storage and temperature abuse of ready-to-eat salad​
Cited by: 16
Author(s): Karin Söderqvist, Omneya Ahmed Osman, Cecilia Wolff, Stefan Bertilsson, Ivar Vågsholm, Sofia Boqvist
Software Mentions: 1
Published: over 7 years ago

10.3390/s21062211

SSVM: An Ultra-Low-Power Strain Sensing and Visualization Module for Long-Term Structural Health Monitoring
Cited by: 4
Author(s): Suleman Khan, Jongbin Won, Jun-Sik Shin, Jun-Young Park, Jong Woong Park, Seung-Eock Kim, Yun Jang, Dong-Joo Kim
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms161125976

Validation of PDE9A Gene Identified in GWAS Showing Strong Association with Milk Production Traits in Chinese Holstein
Cited by: 18
Author(s): Shaohua Yang, X. J. Bi, Yi Xie, Cong Li, Shengli Zhang, Qin Zhang, Dan Sun
Software Mentions: 1
Published: almost 9 years ago

10.3390/ijms22052743

Methamphetamine Blocks Adenosine A2A Receptor Activation via Sigma 1 and Cannabinoid CB1 Receptors
Cited by: 2
Author(s): M Casanovas, Irene Reyes‐Resina, Alejandro Lillo, Jaume Lillo, Raúl López-Arnau, Jorge Camarasa, Elena Escubedo, Gemma Navarro, Rafael Franco
Software Mentions: 1
Published: over 3 years ago

10.2196/21382

Data Quality and Cost-effectiveness Analyses of Electronic and Paper-Based Interviewer-Administered Public Health Surveys: Systematic Review
Cited by: 5
Author(s): Atinkut Alamirrew Zeleke, Tolga Naziyok, Fleur Fritz, Lara Christianson, Rainer Röhrig
Software Mentions: 1
Published: over 3 years ago

10.1186/1471-2105-7-94

GONOME: measuring correlations between GO terms and genomic positions
Cited by: 15
Author(s): Stefan M Stanley, Timothy L. Bailey, John S. Mattick
Software Mentions: 1
Published: over 18 years ago

10.3390/jpm11080737

Association of HLA-B*51:01, HLA-B*55:01, CYP2C9*3, and Phenytoin-Induced Cutaneous Adverse Drug Reactions in the South Indian Tamil Population
Cited by: 6
Author(s): Shobana John, K. Balakrishnan, Chonlaphat Sukasem, T C Vijay Anand, Bhutorn Canyuk, Sutthiporn Pattharachayakul
Software Mentions: 1
Published: about 3 years ago

10.1186/s12879-020-05295-x

Subcutaneous phaeohyphomycosis caused by Hongkongmyces snookiorum in a kidney transplant patient: a case report
Cited by: 5
Author(s): Li‐Zhen Deng, Yiguo Chen, Huanji Xu, Dongke Chen, Longhua Hu, Gui Xiaomei, Ziqian Xia
Software Mentions: 1
Published: about 4 years ago

10.1186/s12883-016-0576-5

Time-dependent parameter of perfusion imaging as independent predictor of clinical outcome in symptomatic carotid artery stenosis
Cited by: 3
Author(s): Sibu Mundiyanapurath, Peter A. Ringleb, Sascha Diatschuk, Oliver Eidel, Sina Burth, Ralf Floca, Markus Möhlenbruch, Wolfgang Wick, Martin Bendszus, Alexander Radbruch
Software Mentions: 1
Published: over 8 years ago

10.1186/s12917-016-0940-0

Genetic detection of peste des petits ruminants virus under field conditions: a step forward towards disease eradication
Cited by: 12
Author(s): Waqas Ashraf, Hermann Unger, Sunaina Haris, Ameena Mobeen, Muhammad Farooq, Muhammad Asif, Qaiser M. Khan
Software Mentions: 1
Published: almost 8 years ago

10.1155/2014/689280

LPS-Challenged TNF<i>α</i>Production, Prostaglandin Secretion, and TNF<i>α</i>/TNFRs Expression in the Endometrium of Domestic Cats in Estrus or Diestrus, and in Cats with Pyometra or Receiving Medroxyprogesterone Acetate
Cited by: 10
Author(s): Ewelina Jursza, A.Z. Szóstek, Mariusz P. Kowalewski, Alois Boos, Kiyoshi Okuda, Marta Siemieniuch
Software Mentions: 1
Published: over 10 years ago

10.1186/s13071-017-2576-8

Selection strategy of phage-displayed immunogens based on an in vitro evaluation of the Th1 response of PBMCs and their potential use as a vaccine against Leishmania infantum infection
Cited by: 15
Author(s): Fernanda F. Ramos, Lourena E. Costa, Daniel Lucas Santos Dias, Thaís T.O. Santos, Marcella Rezende Rodrigues, Daniela P. Lage, Beatriz C.S. Salles, Vívian T. Martins, Patrícia A.F. Ribeiro, Miguel Á. Chávez-Fumagalli, Ana Carolina S. Dias, Patrícia Terra Alves, Érica Leandro Marciano Vieira, Bruno Mendes Roatt, Daniel Menezes‐Souza, Mariana C. Duarte, Antônio Lúcio Teixeira, Luíz Ricardo Goulart, Eduardo Anton̂io Ferraz Coelho
Software Mentions: 1
Published: almost 7 years ago

10.14814/phy2.12652

Cigarette smoke represses the innate immune response to asbestos
Cited by: 14
Author(s): Gilbert F. Morris, Svitlana Danchuk, Yu Wang, Beibei Xu, Roy J. Rando, Arnold R. Brody, Bin Shan, Deborah E. Sullivan
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0059939

A New Microarray Substrate for Ultra-Sensitive Genotyping of KRAS and BRAF Gene Variants in Colorectal Cancer
Cited by: 13
Author(s): Silvia Galbiati, Francesco Damin, Pamela Pinzani, Irene Mancini, Serena Vinci, Marcella Chiari, Claudio Orlando, Laura Cremonesi, Maurizio Ferrari
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0141448

Circulating microRNAs, miR-939, miR-595, miR-519d and miR-494, Identify Cirrhotic Patients with HCC
Cited by: 109
Author(s): Francesca Fornari, Manuela Ferracin, Davide Treré, Maddalena Milazzo, Sara Marinelli, M. Galassi, Laura Venerandi, Daniela Pollutri, Clarissa Patrizi, Alberto Borghi, Francesco Giuseppe Foschi, Giuseppe Francesco Stefanini, Massimo Negrini, Luigi Bolondi, Laura Gramantieri
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0092445

Relationship between Enhanced Intensity of Contrast Enhanced Ultrasound and Microvessel Density of Aortic Atherosclerostic Plaque in Rabbit Model
Cited by: 16
Author(s): Xin You, Pintong Huang, Chao Zhang, Minghui Wang, Ying Zhang, Yanjun Hong, Shumei Wei, Chunmei Liu, Zhaoxia Pu, Jianmin Zhang, Shuyuan Chen
Software Mentions: 1
Published: over 10 years ago