pypi: toolkit | Projects | Ecosyste.ms: Papers

10.1038/s41598-017-09064-w

Facile single-stranded DNA sequencing of human plasma DNA via thermostable group II intron reverse transcriptase template switching
Cited by: 27
Author(s): Douglas C. Wu, Alan M. Lambowitz
Software Mentions: 8
Published: about 7 years ago

10.1371/journal.pgen.1004900

An Intracellular Transcriptomic Atlas of the Giant Coenocyte Caulerpa taxifolia
Cited by: 41
Author(s): Aashish Ranjan, Brad T. Townsley, Yasunori Ichihashi, Neelima Sinha, Daniel H. Chitwood
Software Mentions: 7
Published: almost 10 years ago

10.1371/journal.pone.0080822

Bacterial Endosymbiosis in a Chordate Host: Long-Term Co-Evolution and Conservation of Secondary Metabolism
Cited by: 50
Author(s): Jason C. Kwan, Eric W. Schmidt
Software Mentions: 5
Published: almost 11 years ago

10.3389/fdata.2021.582468

Named Data Networking for Genomics Data Management and Integrated Workflows
Cited by: 3
Author(s): Cameron Ogle, David Reddick, Coleman B. McKnight, Tyler D. Biggs, Rini Pauly, Stephen P. Ficklin, F. Alex Feltus, Susmit Shannigrahi
Software Mentions: 4
Published: over 3 years ago

10.1002/ece3.3063

Regulation of gene expression is associated with tolerance of the Arctic copepod Calanus glacialis to <scp>CO</scp> 2 ‐acidified sea water
Cited by: 40
Author(s): Allison Bailey, Pierre De Wit, Peter Thor, Howard I. Browman, Reidun M. Bjelland, Steven Shema, David M. Fields, Jeffrey A. Runge, Cameron Thompson, Haakon Hop
Software Mentions: 4
Published: over 7 years ago

10.1038/srep15968

Dengue virus infection alters post-transcriptional modification of microRNAs in the mosquito vector Aedes aegypti
Cited by: 32
Author(s): Kayvan Etebari, Solomon Osei-Amo, Simon P. Blomberg, Sassan Asgari
Software Mentions: 4
Published: about 9 years ago

10.1186/s12915-019-0659-z

Biological and RNA regulatory function of MOV10 in mammalian germ cells
Cited by: 18
Author(s): Kaiqiang Fu, Suwen Tian, Huanhuan Tan, Caifeng Wang, Hanben Wang, Min Wang, Yuan‐Yuan Wang, Zhen Chen, Yanfeng Wang, Qiuling Yue, Qiushi Xu, Shuya Zhang, Haixin Li, Jie Xie, Mingyan Lin, Mengcheng Luo, Feng Chen, Lan Ye, Ke Zheng
Software Mentions: 4
Published: over 5 years ago

10.1038/srep18470

Genome-wide analysis of microRNAs identifies the lipid metabolism pathway to be a defining factor in adipose tissue from different sheep
Cited by: 37
Author(s): Xiangyang Miao, Qingmiao Luo, Xiaoqiong Qin, Yuntao Guo
Software Mentions: 3
Published: almost 9 years ago

10.1038/s41598-019-41189-y

Identifying High Confidence microRNAs in the Developing Seeds of Jatropha curcas
Cited by: 11
Author(s): Mo Yang, Hongyu Lu, Feiqun Xue, Lanqing Ma
Software Mentions: 3
Published: over 5 years ago

10.18632/oncotarget.14248

Mutations acquired by hepatocellular carcinoma recurrence give rise to an aggressive phenotype
Cited by: 12
Author(s): Ji-Hye Choi, Min Jae Kim, Yong Keun Park, Jong-Yeop Im, So Mee Kwon, Hyung Chul Kim, Hyun Goo Woo, Hee-Jung Wang
Software Mentions: 2
Published: almost 8 years ago

10.1186/1471-2105-6-21

Cited by: 273
Author(s): John L. Moreland, Apostol Gramada, Oleksandr Buzko, Qing Zhang, Philip E. Bourne
Software Mentions: 2
Published: almost 20 years ago

10.7717/peerj.10864

Expression analysis of genes related to cold tolerance in Dendroctonus valens
Cited by: 7
Author(s): Di Zhao, Chunchun Zheng, Fengming Shi, Yecheng Xu, Shixiang Zong, Jing Tao
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pcbi.1002318

The FGGY Carbohydrate Kinase Family: Insights into the Evolution of Functional Specificities
Cited by: 48
Author(s): Ying Zhang, Olga Zagnitko, Irina A. Rodionova, Andrei L. Osterman, Adam Godzik
Software Mentions: 2
Published: almost 13 years ago

10.3390/cancers12071890

Identification of Novel microRNA Prognostic Markers Using Cascaded Wx, a Neural Network-Based Framework, in Lung Adenocarcinoma Patients
Cited by: 9
Author(s): Jeong Seon Kim, Sang Hoon Chun, Sung Soo Park, Sieun Lee, Sae Eun Kim, Ji Hyung Hong, Keunsoo Kang, Yoon Ho Ko, Young Ho Ahn
Software Mentions: 2
Published: over 4 years ago

10.1186/s12987-020-00209-0

Differential expression of receptors mediating receptor-mediated transcytosis (RMT) in brain microvessels, brain parenchyma and peripheral tissues of the mouse and the human
Cited by: 68
Author(s): Wandong Zhang, Qing Yan Liu, Arsalan S. Haqqani, Sonia Leclerc, Ziying Liu, François Fauteux, Ewa Baumann, Christie E. Delaney, Dao Ly, Alexandra T. Star, Eric Brunette, Caroline Sodja, Melissa Hewitt, Jagdeep K. Sandhu, Danica Stanimirovic
Software Mentions: 2
Published: over 4 years ago

10.1038/srep20850

tRNA-Derived Small Non-Coding RNAs in Response to Ischemia Inhibit Angiogenesis
Cited by: 83
Author(s): Qing Li, Bin Hu, Guowen Hu, Chun-Yuan Chen, Xiamu Niu, Juan Liu, Shumin Zhou, Changqing Zhang, Yan Wang, Zhifeng Deng
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-021-82163-x

Functional characterization of thermotolerant microbial consortium for lignocellulolytic enzymes with central role of Firmicutes in rice straw depolymerization
Cited by: 40
Author(s): Parmeshwar Vitthal Gavande, Arijita Basak, Subhajit Sen, Khusboo Lepcha, Nensina Murmu, Vijeta Rai, Deepika Mazumdar, Shyama Prasad Saha, Vaskar Das, Shilpi Ghosh
Software Mentions: 2
Published: almost 4 years ago

10.1007/s11548-020-02132-z

Novel platform for development, training, and validation of computer-assisted detection/diagnosis software
Cited by: 6
Author(s): Yukihiro Nomura, Soichiro Miki, Naoto Hayashi, Shouhei Hanaoka, Issei Sato, Tsuneo Yoshikawa, Yoshitaka Masutani, Osamu Abe
Software Mentions: 2
Published: over 4 years ago

10.1098/rsta.2008.0314

Subject-specific, multiscale simulation of electrophysiology: a software pipeline for image-based models and application examples
Cited by: 30
Author(s): Robert S. MacLeod, J.G. Stinstra, Seok Lew, Ross T. Whitaker, Darrell Swenson, M.J. Cole, Jens Krüger, Dana H. Brooks, Chris R. Johnson
Software Mentions: 1
Published: over 15 years ago

10.1186/s13099-018-0267-4

Genome characterization of bile-isolated Shewanella algae ACCC
Cited by: 9
Author(s): Shu-Ying Tseng, Kwong‐Chung Tung, Jan‐Fang Cheng, Yi‐Hsuan Lee, Zong‐Yen Wu, Yu‐Kai Hong, Shi‐Yu Chen, Yao‐Ting Huang, Po‐Yu Liu
Software Mentions: 1
Published: about 6 years ago

10.1186/s13321-016-0148-0

Comparing structural fingerprints using a literature-based similarity benchmark
Cited by: 129
Author(s): Noel M. O’Boyle, Roger A. Sayle
Software Mentions: 1
Published: over 8 years ago

10.1186/s12870-019-1766-2

Genetic and cytological analyses reveal the recombination landscape of a partially differentiated plant sex chromosome in kiwifruit
Cited by: 14
Author(s): Sarah M. Pilkington, Jibran Tahir, Elena Hilario, Susan E. Gardiner, David Chagné, Andrew Catanach, John McCallum, Linley K. Jesson, Lena G. Fraser, M.A. McNeilage, Cecilia Deng, Ross N. Crowhurst, Paul M. Datson, Q. Zhang
Software Mentions: 1
Published: over 5 years ago

10.1186/s12870-018-1415-1

Small RNA and degradome sequencing used to elucidate the basis of tolerance to salinity and alkalinity in wheat
Cited by: 23
Author(s): Huanan Han, Qi Wang, Wei Lin, Yu Liang, Jing Dai, Guangmin Xia, Shuwei Liu
Software Mentions: 1
Published: about 6 years ago

10.3390/s21030999

Characterisation of Textile Embedded Electrodes for Use in a Neonatal Smart Mattress Electrocardiography System
Cited by: 7
Author(s): Henry Dore, Rodrigo Avilés-Espinosa, Zhenhua Luo, Oana Anton, Heike Rabe, Elizabeth Rendón-Morales
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-017-03927-y

Impact of Module-X2 and Carbohydrate Binding Module-3 on the catalytic activity of associated glycoside hydrolases towards plant biomass
Cited by: 22
Author(s): Nandita Pasari, Nidhi Adlakha, Manish Gupta, Zeenat Bashir, Girish H. Rajacharya, Garima Verma, Manoj Munde, Rakesh Bhatnagar, Syed Shams Yazdani
Software Mentions: 1
Published: over 7 years ago

10.1186/s12864-017-3587-8

Small RNA profiling and degradome analysis reveal regulation of microRNA in peanut embryogenesis and early pod development
Cited by: 27
Author(s): Chao Gao, Pengfei Wang, Shuzhen Zhao, Chuanzhi Zhao, Han Xia, Lei Hou, Jie Zheng, Ye Zhang, Changsheng Li, Xingjun Wang
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-20384-3

Obtaining high-quality draft genomes from uncultured microbes by cleaning and co-assembly of single-cell amplified genomes
Cited by: 42
Author(s): Masato Kogawa, Masahito Hosokawa, Yohei Nishikawa, Kazuki Mori, Haruko Takeyama
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0116222

Fin Whale Sound Reception Mechanisms: Skull Vibration Enables Low-Frequency Hearing
Cited by: 61
Author(s): Ted W. Cranford, Petr Krysl
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12872-017-0735-7

Association of rs662799 in APOA5 with CAD in Chinese Han population
Cited by: 14
Author(s): Hua Chen, Shifang Ding, Mei Zhou, Xin-ai Wu, Xi Liu, Yun Wu, Dechao Liu
Software Mentions: 1
Published: almost 7 years ago

10.1002/chem.201604705

Accurate Bond Lengths to Hydrogen Atoms from Single-Crystal X-ray Diffraction by Including Estimated Hydrogen ADPs and Comparison to Neutron and QM/MM Benchmarks
Cited by: 34
Author(s): Birger Dittrich, Jens Lübben, Stefan Mebs, Armin Wagner, Peter Luger, Ralf Flaig
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0058740

Genome Wide Transcriptional Profile Analysis of Vitis amurensis and Vitis vinifera in Response to Cold Stress
Cited by: 90
Author(s): H. P. Xin, Wei Zhu, Lina Wang, Yue Xiang, Linchuan Fang, Jitao Li, Xiaoming Sun, Nian Wang, Jason P. Londo, Shaohua Li
Software Mentions: 1
Published: over 11 years ago

10.1128/AEM.00388-20

Adaptive Laboratory Evolution and Reverse Engineering of Single-Vitamin Prototrophies in Saccharomyces cerevisiae
Cited by: 16
Author(s): Thomas Perli, Dewi P. I. Moonen, Marcel van den Broek, Jack T. Pronk, Jean‐Marc Daran
Software Mentions: 1
Published: over 4 years ago

Ecosyste.ms: Papers

Projects: pypi: toolkit

Papers Mentioning toolkit 33