pypi: dPCA | Projects | Ecosyste.ms: Papers

10.3389/fninf.2019.00057

Comparing Open-Source Toolboxes for Processing and Analysis of Spike and Local Field Potentials Data
Cited by: 14
Author(s): Valentina A. Unakafova, Alexander Gail
Software Mentions: 23
Published: over 5 years ago

10.1186/gb-2014-15-1-r11

dCLIP: a computational approach for comparative CLIP-seq analyses
Cited by: 46
Author(s): Tao Wang, Yang Xie, Guanghua Xiao
Software Mentions: 4
Published: almost 11 years ago

10.1371/journal.pone.0254015

Multiple configurations and fluctuating trophic control in the Barents Sea food-web
Cited by: 5
Author(s): Elliot Sivel, Benjamin Planque, Ulf Lindstrøm, Nigel G. Yoccoz
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0243429

A molecular dynamics simulation study on the propensity of Asn-Gly-containing heptapeptides towards β-turn structures: Comparison with ab initio quantum mechanical calculations
Cited by: 2
Author(s): Dimitrios A. Mitsikas, Nicholas M. Glykos
Software Mentions: 3
Published: almost 4 years ago

10.1093/bioinformatics/btaa960

Fast detection of differential chromatin domains with SCIDDO
Cited by: 7
Author(s): Peter Ebert, Marcel H. Schulz
Software Mentions: 3
Published: almost 4 years ago

10.1186/1471-2164-15-S9-S12

dCaP: detecting differential binding events in multiple conditions and proteins
Cited by: 4
Author(s): Kuan Bei Chen, Ross C. Hardison, Yu Zhang
Software Mentions: 3
Published: almost 10 years ago

10.1523/ENEURO.0231-20.2020

The Neural Representation of Force across Grasp Types in Motor Cortex of Humans with Tetraplegia
Cited by: 7
Author(s): Anisha Rastogi, Francis R. Willett, Jéssica Abreu, Douglas C. Crowder, Brian Murphy, William D. Memberg, Carlos E. Vargas-Irwin, Jonathan P. Miller, Jennifer A. Sweet, Benjamin L. Walter, Paymon Rezaii, Sergey D. Stavisky, Leigh R. Hochberg, Krishna V. Shenoy, Jaimie M. Henderson, Robert F. Kirsch, A Bolu Ajiboye
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pcbi.1003379

Decipher the Mechanisms of Protein Conformational Changes Induced by Nucleotide Binding through Free-Energy Landscape Analysis: ATP Binding to Hsp70
Cited by: 29
Author(s): Adrien Nicolaı̈, Patrice Delarue, Patrick Senet
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pcbi.1000357

Amyloidogenesis Abolished by Proline Substitutions but Enhanced by Lipid Binding
Cited by: 39
Author(s): Ping Jiang, Wei Xu, Yuguang Mu
Software Mentions: 2
Published: over 15 years ago

10.1007/s00894-012-1563-4

Principal component and clustering analysis on molecular dynamics data of the ribosomal L11·23S subdomain
Cited by: 94
Author(s): Antje Wolf, Karl N. Kirschner
Software Mentions: 2
Published: about 12 years ago

10.7554/eLife.60535

Frontal eye field and caudate neurons make different contributions to reward-biased perceptual decisions
Cited by: 10
Author(s): Yunshu Fan, Joshua I. Gold, Long Ding
Software Mentions: 2
Published: almost 4 years ago

10.3389/fbioe.2019.00240

Structural Analysis of PfSec62-Autophagy Interacting Motifs (AIM) and PfAtg8 Interactions for Its Implications in RecovER-phagy in Plasmodium falciparum
Cited by: 2
Author(s): Ashalatha Sreshty Mamidi, Ananya Ray, Namita Surolia
Software Mentions: 2
Published: about 5 years ago

10.1186/s12864-019-5472-0

Genome-wide analysis of epigenetic dynamics across human developmental stages and tissues
Cited by: 3
Author(s): Xia Zhang, Yanglan Gan, Guobing Zou, Jihong Guan, Shuigeng Zhou
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-018-35488-z

Neural coding of intended and executed grasp force in macaque areas AIP, F5, and M1
Cited by: 14
Author(s): Rijk W. Intveld, Benjamin Dann, Jonathan A. Michaels, Hansjörg Scherberger
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-018-37302-2

Reduced neural representation of arm/hand actions in the medial posterior parietal cortex
Cited by: 8
Author(s): Annalisa Bosco, Rossella Breveglieri, Matteo Filippini, Claudio Galletti, Patrizia Fattori
Software Mentions: 1
Published: almost 6 years ago

10.7554/eLife.58154

Minimally dependent activity subspaces for working memory and motor preparation in the lateral prefrontal cortex
Cited by: 23
Author(s): Tang Cheng, Roger Herikstad, Aishwarya Parthasarathy, Camilo Libedinsky, Shih-Cheng Yen
Software Mentions: 1
Published: about 4 years ago

10.7554/eLife.26868

Task-dependent recurrent dynamics in visual cortex
Cited by: 18
Author(s): Satohiro Tajima, Kowa Koida, Chihiro I Tajima, Hideyuki Suzuki, Kazuyuki Aihara, Hidehiko Komatsu
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.10989

Demixed principal component analysis of neural population data
Cited by: 389
Author(s): Dmitry Kobak, Wieland Brendel, Christos Constantinidis, Claudia E. Feierstein, Ádám Kepecs, Zachary F. Mainen, Xue Lian Qi, Ranulfo Romo, Naoshige Uchida, Christian K. Machens
Software Mentions: 1
Published: over 8 years ago

10.7554/eLife.46015

Neural ensemble dynamics in dorsal motor cortex during speech in people with paralysis
Cited by: 56
Author(s): Sergey D. Stavisky, Francis R. Willett, Guy H Wilson, Brian Murphy, Paymon Rezaii, Donald T. Avansino, William D. Memberg, Jonathan P. Miller, Robert F. Kirsch, Leigh R. Hochberg, A Bolu Ajiboye, Shaul Druckmann, Krishna V. Shenoy, Jaimie M. Henderson
Software Mentions: 1
Published: almost 5 years ago

10.7554/eLife.44526

State-dependent geometry of population activity in rat auditory cortex
Cited by: 15
Author(s): Dmitry Kobak, José L. Pardo-Vázquez, Mafalda Valente, Christian K. Machens, Alfonso Renart
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.50962

Mechanisms that allow cortical preparatory activity without inappropriate movement
Cited by: 12
Author(s): Timothy R Darlington, Stephen G. Lisberger
Software Mentions: 1
Published: over 4 years ago

10.3390/ijms21165655

Plasticity of the 340-Loop in Influenza Neuraminidase Offers New Insight for Antiviral Drug Development
Cited by: 3
Author(s): Nanyu Han, Jiawei Ng, Yanpeng Li, Yuguang Mu, Zunxi Huang
Software Mentions: 1
Published: about 4 years ago

10.1186/s12859-017-1676-y

JED: a Java Essential Dynamics Program for comparative analysis of protein trajectories
Cited by: 11
Author(s): Charles David, Ettayapuram Ramaprasad Azhagiya Singam, Donald J. Jacobs
Software Mentions: 1
Published: over 7 years ago

10.1523/ENEURO.0085-16.2016

The Largest Response Component in the Motor Cortex Reflects Movement Timing but Not Movement Type
Cited by: 162
Author(s): Matthew T. Kaufman, Jeffrey Seely, David Sussillo, Stephen I. Ryu, Krishna V. Shenoy, Mark M. Churchland
Software Mentions: 1
Published: over 8 years ago

10.3390/molecules24234417

Conformational Investigations in Flexible Molecules Using Orientational NMR Constraints in Combination with 3J-Couplings and NOE Distances
Cited by: 11
Author(s): Christophe Farès, Julia B. Lingnau, Cornelia Wirtz, Ulrich Sternberg
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pbio.3000054

The amplitude in periodic neural state trajectories underlies the tempo of rhythmic tapping
Cited by: 52
Author(s): Jorge Gámez, Germán Mendoza, Luis Prado, Abraham Betancourt, Hugo Merchant
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1004444

The Trigger Factor Chaperone Encapsulates and Stabilizes Partial Folds of Substrate Proteins
Cited by: 22
Author(s): Kushagra Singhal, Jocelyne Vreede, Alireza Mashaghi, Sander J. Tans, Peter G. Bolhuis
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0060995

Plasticity of 150-Loop in Influenza Neuraminidase Explored by Hamiltonian Replica Exchange Molecular Dynamics Simulations
Cited by: 19
Author(s): Nanyu Han, Yuguang Mu
Software Mentions: 1
Published: over 11 years ago

10.1016/j.celrep.2018.11.057

Condition-Dependent Neural Dimensions Progressively Shift during Reach to Grasp
Cited by: 27
Author(s): Adam G. Rouse, Marc H. Schieber
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmolb.2021.686086

Investigating Crosstalk Among PTMs Provides Novel Insight Into the Structural Basis Underlying the Differential Effects of Nt17 PTMs on Mutant Httex1 Aggregation
Cited by: 6
Author(s): Anass Chiki, Zhidian Zhang, Kolla Rajasekhar, Luciano A. Abriata, Iman Rostami, Lucien Krapp, Driss Boudeffa, Matteo Dal Peraro, Hilal A. Lashuel
Software Mentions: 1
Published: over 3 years ago

10.3389/fncir.2021.679796

Revisiting Persistent Neuronal Activity During Covert Spatial Attention
Cited by: 8
Author(s): Julià L. Amengual, Suliann Ben Hamed
Software Mentions: 1
Published: over 3 years ago

10.3389/fnins.2019.00901

Time-Variant Linear Discriminant Analysis Improves Hand Gesture and Finger Movement Decoding for Invasive Brain-Computer Interfaces
Cited by: 20
Author(s): Johannes Gruenwald, Andrei Znobishchev, Christoph Kapeller, Kazuhiro Kamada, Josef Scharinger, Christoph Guger
Software Mentions: 1
Published: about 5 years ago

10.3389/fnsys.2021.655110

Neuronal Representation of Locomotion During Motivated Behavior in the Mouse Anterior Cingulate Cortex
Cited by: 5
Author(s): Sachuriga, Hiroshi Nishimaru, Yusaku Takamura, Jumpei Matsumoto, Mariana Ferreira Pereira de Araújo, Taketoshi Ono, Hisao Nishijo
Software Mentions: 1
Published: over 3 years ago

10.1117/1.JBO.26.4.046501

Aberration-free digital holographic phase imaging using the derivative-based principal component analysis
Cited by: 3
Author(s): Xiaomin Lai, Sheng Xiao, Chen Xu, Shanhui Fan, Kaihua Wei
Software Mentions: 1
Published: over 3 years ago

10.1038/srep39271

A structural insight into the negative effects of opioids in analgesia by modulating the TLR4 signaling: An in silico approach
Cited by: 23
Author(s): Masaud Shah, Muhammad Ayaz Anwar, Dhanusha Yesudhas, Jayalakshmi Krishnan, Sangdun Choi
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-018-20051-7

Population coding of grasp and laterality-related information in the macaque fronto-parietal network
Cited by: 32
Author(s): Jonathan A. Michaels, Hansjörg Scherberger
Software Mentions: 1
Published: almost 7 years ago

Ecosyste.ms: Papers

Projects: pypi: dPCA

Papers Mentioning dPCA 36