Ecosyste.ms: Papers

10.18632/oncotarget.24418

Quantitative mass spectrometry analysis reveals a panel of nine proteins as diagnostic markers for colon adenocarcinomas
Cited by: 17
Author(s): Apurva Atak, S. K. Khurana, Kishore Gollapalli, Panga Jaipal Reddy, Roei Levy, Stav Ben-Salmon, Dror Hollander, Maya Donyo, Anke Heit, Agnes Hotz‐Wagenblatt, Hadas Biran, Roded Sharan, Shailendra Rane, Ashutosh Shelar, Gil Ast, Sanjeeva Srivastava
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-017-00823-3

Systematic identification and characterization of cardiac long intergenic noncoding RNAs in zebrafish
Cited by: 11
Author(s): Lei Wang, Xiao Ma, Xiaolei Xu, Yuji Zhang
Software Mentions: 4
Published: about 7 years ago

10.1186/s13567-019-0622-6

Transcriptome analysis unraveled potential mechanisms of resistance to Haemonchus contortus infection in Merino sheep populations bred for parasite resistance
Cited by: 27
Author(s): Runfeng Zhang, Fang Liu, Peter W. Hunt, Congjun Li, Lichun Zhang, Aaron Ingham, Robert W. Li
Software Mentions: 3
Published: over 5 years ago

10.3389/fgene.2018.00485

A Comparison of the TempO-Seq S1500+ Platform to RNA-Seq and Microarray Using Rat Liver Mode of Action Samples
Cited by: 35
Author(s): Pierre R. Bushel, Richard S. Paules, Scott S. Auerbach
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-018-34015-4

ERK1/2-dependent gene expression in the bovine ovulating follicle
Cited by: 15
Author(s): Yasmin Schuermann, Monique Tomazele Rovani, Bernardo Garziera Gasperin, Rogério Ferreira, Juliana Germano Ferst, Ejimedo Madogwe, Paulo Bayard Dias Gonçalves, Vilceu Bordignon, Raj Duggavathi
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-021-95916-5

Juvenile social defeat stress exposure favors in later onset of irritable bowel syndrome-like symptoms in male mice
Cited by: 7
Author(s): Kenjiro Matsumoto, Kana Takata, Daisuke Yamada, Haruki Usuda, Koichiro Wada, Tada Maaya, Yoshiyuki Mishima, Shunji Ishihara, Syunji Horie, Akiyoshi Saitoh, Shinichi Kato
Software Mentions: 3
Published: almost 3 years ago

10.1186/s13148-019-0801-3

Dysfunctional epigenetic aging of the normal colon and colorectal cancer risk
Cited by: 42
Author(s): Ting Wang, Sean K. Maden, E. Georg Luebeck, Christopher I. Li, Polly A. Newcomb, Cornelia M. Ulrich, Ji Hoon Eric Joo, Daniel D. Buchanan, Roger L. Milne, Melissa C. Southey, Kelly Carter, Amber Willbanks, Yanxin Luo, Ming Yu, William M. Grady
Software Mentions: 3
Published: over 4 years ago

10.3390/ijms21196980

Role of miRNA-mRNA Interaction in Neural Stem Cell Differentiation of Induced Pluripotent Stem Cells
Cited by: 6
Author(s): Satish Kumar, Joanne E. Curran, Erica DeLeon, Ana C Leandro, Tom E. Howard, Donna M. Lehman, Sarah Williams‐Blangero, David C. Glahn, John Blangero
Software Mentions: 2
Published: over 3 years ago

10.3389/fncel.2019.00461

Transcranial Current Stimulation Alters the Expression of Immune-Mediating Genes
Cited by: 20
Author(s): Monika Rabenstein, Marcus Unverricht-Yeboah, Meike Hedwig Keuters, Anton Pikhovych, Joerg Hucklenbroich, Sabine Ulrike Vay, Stefan Blaschke, Anne Ladwig, Henrik Walter, Magdalena Beiderbeck, Gereon R. Fink, Michael Schroeter, Ralf Kriehuber, Maria Adele Rueger
Software Mentions: 2
Published: over 4 years ago

10.1186/s12888-016-1190-1

Altered fractional amplitude of low frequency fluctuation associated with cognitive dysfunction in first-episode drug-naïve major depressive disorder patients
Cited by: 32
Author(s): Manli Huang, Shengyong Lu, Liang Yu, Lingjiang Li, Peng Zhang, Jianbo Hu, Weihua Zhou, Shaohua Hu, Ning Wei, Jinwen Huang, Jian Weng, Yi Xu
Software Mentions: 2
Published: over 7 years ago

10.3390/ani10020344

RNA Sequencing (RNA-Seq) Based Transcriptome Analysis in Immune Response of Holstein Cattle to Killed Vaccine against Bovine Viral Diarrhea Virus Type I
Cited by: 13
Author(s): Bryan Irvine Lopez, Kier Gumangan Santiago, Dong-Hui Lee, Seungmin Ha, Kangseok Seo
Software Mentions: 2
Published: about 4 years ago

10.3390/ijms20040863

Application of Data-Independent Acquisition Approach to Study the Proteome Change from Early to Later Phases of Tomato Pathogenesis Responses
Cited by: 17
Author(s): Kai Fan, Kuo-Hsin Wang, Wen-Teng Chang, Jhih‐Ci Yang, Ching-Fang Yeh, Kai-Tan Cheng, Sheng-Chi Hung, Yet-Ran Chen
Software Mentions: 2
Published: over 5 years ago

10.1093/icb/icz096

Immediate Transcriptional Response to a Temperature Pulse under a Fluctuating Thermal Regime
Cited by: 4
Author(s): Dacotah Melicher, Alex S. Torson, Tanner J. Anderson, George D. Yocum, Joseph P. Rinehart, Julia H. Bowsher
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pone.0220378

Coordinated transcriptional regulation by thyroid hormone and glucocorticoid interaction in adult mouse hippocampus-derived neuronal cells
Cited by: 12
Author(s): Pia Bagamasbad, Jose Ezekiel C. Espina, Joseph R. Knoedler, Arasakumar Subramani, Ariel J. Harden, Robert J. Denver
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pone.0098346

Structural and Functional Brain Alterations in End Stage Renal Disease Patients on Routine Hemodialysis: A Voxel-Based Morphometry and Resting State Functional Connectivity Study
Cited by: 51
Author(s): Yingwei Qiu, Xiaofei Lv, Huanhuan Su, Guihua Jiang, Cheng Li, Tian Jian-guo
Software Mentions: 2
Published: almost 10 years ago

10.1002/joc.5199

A new precipitation and drought climatology based on weather patterns
Cited by: 29
Author(s): Doug Richardson, Hayley J. Fowler, C. G. Kilsby, Robert A. Neal
Software Mentions: 1
Published: almost 7 years ago

10.34172/apb.2021.033

Bioinformatics and In vitro Studies Reveal the Importance of p53, PPARG and Notch Signaling Pathway in Inhibition of Breast Cancer Stem Cells by Hesperetin
Cited by: 6
Author(s): Adam Hermawan, Muthi Ikawati, Annisa Khumaira, Herwandhani Putri, Riris Istighfari Jenie, Sonia Meta Angraini, Haruma Anggraini Muflikhasari
Software Mentions: 1
Published: about 4 years ago

10.18632/oncotarget.24897

Correlation between lower balance of Th2 helper T-cells and expression of PD-L1/PD-1 axis genes enables prognostic prediction in patients with glioblastoma
Cited by: 33
Author(s): Yasuo Takashima, Atsushı Kawaguchi, Tomohiko Kanayama, Azusa Hayano
Software Mentions: 1
Published: about 6 years ago

10.18632/aging.102268

Identification of a novel microRNA recurrence-related signature and risk stratification system in breast cancer
Cited by: 14
Author(s): Jianguo Lai, Bin Chen, Guochun Zhang, Yulei Wang, Hsiaopei Mok, Wen Li, Zihao Pan, Fengxi Su, Ning Liao
Software Mentions: 1
Published: over 4 years ago

10.3390/ani11051392

Genome-Wide Identification of Candidate Genes for Milk Production Traits in Korean Holstein Cattle
Cited by: 10
Author(s): Sang–Wook Kim, Bee-Oh Lim, Joohyeon Cho, Seokhyun Lee, Chang Gwon Dang, Jung-Hwan Jeon, Junmo Kim, J. Lee
Software Mentions: 1
Published: about 3 years ago

10.31557/APJCP.2020.21.3.611

Bioinformatics Studies Provide Insight into Possible Target and Mechanisms of Action of Nobiletin against Cancer Stem Cells
Cited by: 9
Author(s): Adam Hermawan, Herwandhani Putri
Software Mentions: 1
Published: about 4 years ago

10.1128/MRA.01073-19

Complete Genome Sequence of a Pseudomonas aeruginosa Isolate from a Kidney Stone
Cited by: 3
Author(s): Genevieve Johnson, Nicole M. Stark, Alan J. Wolfe, Catherine Putonti
Software Mentions: 1
Published: over 4 years ago

10.1128/MRA.01171-19

Complete Genome Sequence of Escherichia coli O157:H7 Strain Al Ain, Isolated from Camel Feces in the United Arab Emirates
Cited by: 0
Author(s): Shafeeq Rahman, Shafeeq Rahman, Sharmila Banu
Software Mentions: 1
Published: over 4 years ago

10.1128/MRA.00002-21

Complete Genome Sequence of Desulfobulbus oligotrophicus Prop6, an Anaerobic Deltabacterota Strain That Lacks Mercury Methylation Capability
Cited by: 0
Author(s): Peter T. Podar, Kellie Peyton, Ally Soren, Regina L. Wilpiszeski, Cynthia C. Gilmour, Dwayne A. Elias, Mircea Podar
Software Mentions: 1
Published: over 3 years ago

10.3390/molecules23061312

Knowledge-Based Neuroendocrine Immunomodulation (NIM) Molecular Network Construction and Its Application
Cited by: 6
Author(s): Tongxing Wang, Lu Han, Xiaorui Zhang, Rongrong Wu, Xiaorui Cheng, Wen Zhou, Yongxiang Zhang
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12957-018-1375-9

Evaluation of the HOXA11 level in patients with lung squamous cancer and insights into potential molecular pathways via bioinformatics analysis
Cited by: 19
Author(s): Rui Zhang, Tong-Tong Zhang, Gao‐Qiang Zhai, Xian-yu Guo, Yuan Qin, Ting‐Qing Gan, Yu Zhang, Gang Chen, Wei‐Jia Mo, Zhaoyong Feng
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0030180

Pre and Post Synaptic NMDA Effects Targeting Purkinje Cells in the Mouse Cerebellar Cortex
Cited by: 12
Author(s): Etienne Lonchamp, Frédéric Gambino, Jean‐Luc Dupont, Frédéric Doussau, Antoine M. Valera, Bernard Poulain, Jean‐Louis Bossu
Software Mentions: 1
Published: over 12 years ago

10.1186/s40662-019-0155-0

A cellular and proteomic approach to assess proteins extracted from cryopreserved human amnion in the cultivation of corneal stromal keratocytes for stromal cell therapy
Cited by: 10
Author(s): Beau J. Fenner, Nur Zahirah Binte M Yusoff, Matthias Fuest, Lanlan Zhou, Francisco Bandeira, Howard Cajucom-Uy, Hwee Leong Tan, Jodhbir S. Mehta, Gary Hin‐Fai Yam
Software Mentions: 1
Published: over 4 years ago

10.3389/fcimb.2020.577819

Serum Proteomics Reveals Alterations in Protease Activity, Axon Guidance, and Visual Phototransduction Pathways in Infants With In Utero Exposure to Zika Virus Without Congenital Zika Syndrome
Cited by: 9
Author(s): Janaína Macedo-da-Silva, Lívia Rosa-Fernandes, Raquel Hora Barbosa, Cláudia Blanes Angeli, Fabiana Rabe Carvalho, Renata Artimos de Oliveira Vianna, Paulo C. Carvalho, Martin R. Larsen, Claudete Araújo Cardoso, Giuseppe Palmisano
Software Mentions: 1
Published: over 3 years ago

10.3389/fphar.2019.00782

The Essential Oils and Eucalyptol From Artemisia vulgaris L. Prevent Acetaminophen-Induced Liver Injury by Activating Nrf2–Keap1 and Enhancing APAP Clearance Through Non-Toxic Metabolic Pathway
Cited by: 46
Author(s): Zhihui Jiang, Xin Guo, Kunpeng Zhang, Ganesh Sekaran, Baorui Cao, Qingqing Zhao, Shouquan Zhang, Gordon M. Kirby, Xiaoying Zhang
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-017-13470-5

Dynamic and Modularized MicroRNA Regulation and Its Implication in Human Cancers
Cited by: 49
Author(s): Jiang Shu, Bruno Vieira Resende e Silva, Tian Gao, Zheng Xu, Juan Cui
Software Mentions: 1
Published: over 6 years ago

10.1002/jev2.12124

Human bronchial epithelial cell‐derived extracellular vesicle therapy for pulmonary fibrosis via inhibition of TGF‐β‐WNT crosstalk
Cited by: 56
Author(s): Tsukasa Kadota, Yu Fujita, Jun Araya, Naoaki Watanabe, Shota Fujimoto, Hironori Kawamoto, Shunsuke Minagawa, Hiromichi Hara, Takashi Ohtsuka, Yusuke Yamamoto, Kazuyoshi Kuwano, Takahiro Ochiya
Software Mentions: 1
Published: almost 3 years ago