Ecosyste.ms: Papers

10.3389/fimmu.2020.608066

Ecological Factors Mediate Immunity and Parasitic Co-Infection in Sea Fan Octocorals
Cited by: 2
Author(s): Allison M. Tracy, Ernesto Weil, Colleen A. Burge
Software Mentions: 6
Published: almost 4 years ago

10.3390/genes10070552

Transcriptome Analysis of Landrace Pig Subcutaneous Preadipocytes during Adipogenic Differentiation
Cited by: 14
Author(s): Xitong Zhao, Shaokang Chen, Zhen Tan, Yuan Wang, Fengxia Zhang, Ting Yang, Yibing Liu, Ai Hong, Kai Xing, Chuduan Wang
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-018-34855-0

Safranal induces DNA double-strand breakage and ER-stress-mediated cell death in hepatocellular carcinoma cells
Cited by: 75
Author(s): Ala’a Al-Hrout, Amphun Chaiboonchoe, Basel Khraiwesh, Chandraprabha Murali, Badriya Baig, Raafat El‐Awady, Hamadeh Tarazi, Amnah Alzahmi, David R. Nelson, Yaser E. Greish, Wafaa Ramadan, Kourosh Salehi‐Ashtiani, Amr Amin
Software Mentions: 4
Published: about 6 years ago

10.3390/plants10040769

Transcriptome Analysis of Needle and Root of Pinus Massoniana in Response to Continuous Drought Stress
Cited by: 10
Author(s): Xiaozhou Feng, Zhao Yang, Xiurong Wang, Qiao Li, Jie Ran
Software Mentions: 4
Published: over 3 years ago

10.1111/jcmm.14163

LncRNA-mRNA competing endogenous RNA network depicts transcriptional regulation in ischaemia reperfusion injury
Cited by: 19
Author(s): Hongying Liu, Dan-Ping Xu, Xin Zhong, Dongsheng Xu, Geng Chen, Junbo Ge, Hua Li
Software Mentions: 4
Published: almost 6 years ago

10.3389/fcell.2020.00807

The Pathogenic Effects of Fusobacterium nucleatum on the Proliferation, Osteogenic Differentiation, and Transcriptome of Osteoblasts
Cited by: 8
Author(s): Hui Gao, Tianyong Sun, Fanghong Yang, Jiakan Yuan, Mei Yang, Wenyan Kang, Di Tang, Jun Zhang, Qiang Feng
Software Mentions: 3
Published: over 4 years ago

10.3389/fcell.2021.670059

A MicroRNA-Based Network Provides Potential Predictive Signatures and Reveals the Crucial Role of PI3K/AKT Signaling for Hepatic Lineage Maturation
Cited by: 3
Author(s): Xicheng Wang, Wencheng Zhang, Yong Yang, Jiansong Wang, Hua Qiu, Lijun Liao, Tsunekazu Oikawa, Eliane Wauthier, Praveen Sethupathy, Lola M. Reíd, Zhongmin Liu, Zhiying He
Software Mentions: 3
Published: over 3 years ago

10.3390/ijms161126004

Molecular Effects of Irradiation (Cobalt-60) on the Control of Panonychus citri (Acari: Tetranychidae)
Cited by: 3
Author(s): Ke Zhang, Lingyan Luo, Xieting Chen, Meiying Hu, Qiongbo Hu, Liang Gong, Qunfang Weng
Software Mentions: 2
Published: about 9 years ago

10.1186/1471-2105-12-S10-S19

Latent Semantic Indexing of PubMed abstracts for identification of transcription factor candidates from microarray derived gene sets
Cited by: 18
Author(s): Sujoy Roy, Kevin Heinrich, Vinhthuy Phan, Michael W. Berry, Ramin Homayouni
Software Mentions: 2
Published: about 13 years ago

10.1186/s12863-021-00984-1

Dynamic transcriptome profiles of postnatal porcine skeletal muscle growth and development
Cited by: 7
Author(s): Yanping Wang, Jiying Wang, Hongmei Hu, Huaizhong Wang, Cheng Wang, Haichao Lin, Xueyan Zhao
Software Mentions: 2
Published: over 3 years ago

10.1186/s12864-016-2931-8

IPMiner: hidden ncRNA-protein interaction sequential pattern mining with stacked autoencoder for accurate computational prediction
Cited by: 111
Author(s): Xiaoyong Pan, Yongxian Fan, Junchi Yan, Hong‐Bin Shen
Software Mentions: 2
Published: over 8 years ago

10.3389/fmolb.2021.664913

Dynamic Observation of Autophagy and Transcriptome Profiles in a Mouse Model of Bleomycin-Induced Pulmonary Fibrosis
Cited by: 3
Author(s): Yani Wang, Siqi Hu, Lisha Shen, Song Liu, Lin‐Yan Wan, Shuhui Yang, Mengjie Hou, Xinlun Tian, Hongbing Zhang, Kai‐Feng Xu
Software Mentions: 2
Published: over 3 years ago

10.1007/s13238-020-00774-y

Is oral microbiome of children able to maintain resistance and functional stability in response to short-term interference of ingesta?
Cited by: 6
Author(s): Fangqiao Wei, Xiangyu Sun, Yufeng Gao, Haoyu Dou, Liu Yang, Lili Song, H. Luo, Ce Zhu, Qian Zhang, Peiyuan Tong, Wen Ren, Zhe Xun, Ruochun Guo, Yuanlin Guan, Shenghui Li, Yongwen Qi, Junjie Qin, Feng Chen, Shu Guo Zheng
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0137948

Lipidomic Analysis of Chlamydomonas reinhardtii under Nitrogen and Sulfur Deprivation
Cited by: 42
Author(s): Dawei Yang, Dong Song, Tobias Kind, Yan Ma, Jens Hoefkens, Oliver Fiehn
Software Mentions: 1
Published: over 9 years ago

10.3389/fbioe.2017.00048

Navigating the Functional Landscape of Transcription Factors via Non-Negative Tensor Factorization Analysis of MEDLINE Abstracts
Cited by: 5
Author(s): Sujoy Roy, Daqing Yun, Behrouz Madahian, Michael W. Berry, Lih‐Yuan Deng, Daniel Goldowitz, Ramin Homayouni
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0078360

Inactivation of Metabolic Genes Causes Short- and Long-Range dys-Regulation in Escherichia coli Metabolic Network
Cited by: 12
Author(s): Dinesh Kumar Barupal, Sang Jun Lee, Edward D. Karoly, Sankar Adhya
Software Mentions: 1
Published: about 11 years ago

10.1080/21505594.2020.1773038

New insights into the evolution of host specificity of three <i>Penicillium</i> species and the pathogenicity of <i>P. Italicum</i> involving the infection of Valencia orange (<i>Citrus sinensis</i>)
Cited by: 8
Author(s): Liang Gong, Yongfeng Liu, Ye Xiong, Taotao Li, Chang-Cheng Yin, Juanni Zhao, Jia Yu, Qi Yin, Vijai Kumar Gupta, Yueming Jiang, Xuewu Duan
Software Mentions: 1
Published: over 4 years ago

10.1016/j.ymben.2020.05.005

Coupling metabolic addiction with negative autoregulation to improve strain stability and pathway yield
Cited by: 63
Author(s): Yongkun Lv, Yang Gu, Jingliang Xu, Jingwen Zhou, Peng Xu
Software Mentions: 1
Published: over 4 years ago

10.3389/fmicb.2021.686413

New Insights on Streptococcus dysgalactiae subsp. dysgalactiae Isolates
Cited by: 14
Author(s): Cinthia Alves-Barroco, João Caço, Catarina Roma‐Rodrigues, Alexandra R. Fernandes, Ricardo Bexiga, Manuela Oliveira, Lélia Chambel, Rogério Tenreiro, R. Mato, Ilda Santos-Sanches
Software Mentions: 1
Published: over 3 years ago

10.7554/eLife.04316

Knockdown of hypothalamic RFRP3 prevents chronic stress-induced infertility and embryo resorption
Cited by: 56
Author(s): Anna C. Geraghty, Sandra E Muroy, Sheng Zhao, G. Bentley, Lance J. Kriegsfeld, Daniela Kaufer
Software Mentions: 1
Published: almost 10 years ago

10.3389/fphys.2017.01127

Dynamic Changes in Chemosensory Gene Expression during the Dendrolimus punctatus Mating Process
Cited by: 14
Author(s): Sufang Zhang, Zhen Zhang, Xiangbo Kong, Hong Bin Wang, Fu Liu
Software Mentions: 1
Published: almost 7 years ago

10.1155/2021/5575704

Expression Pattern and Prognostic Value of EPHA/EFNA in Breast Cancer by Bioinformatics Analysis: Revealing Its Importance in Chemotherapy
Cited by: 5
Author(s): Zheng Liang, Xu Wang, Kaiti Dong, Xinhua Li, Chenge Qin, Hongyu Zhou
Software Mentions: 1
Published: over 3 years ago

10.3390/genes12060942

Short Time-Series Expression Transcriptome Data Reveal the Gene Expression Patterns of Dairy Cow Mammary Gland as Milk Yield Decreased Process
Cited by: 7
Author(s): Yongliang Fan, Ziyin Han, Xubin Lu, Abdelaziz Adam Idriss Arbab, Mudasir Nazar, Yi Yang, Zhangping Yang
Software Mentions: 1
Published: over 3 years ago

10.1186/s41021-021-00193-3

Dynamic assessing silica particle-induced pulmonary fibrosis and associated regulation of long non-coding RNA expression in Wistar rats
Cited by: 5
Author(s): Linlin Sai, Xue-Jie Qi, Gongchang Yu, Juan Zhang, Yuxin Zheng, Qiang Jia, Cheng Peng
Software Mentions: 1
Published: over 3 years ago

10.1186/1471-2164-12-2

Time-series clustering of gene expression in irradiated and bystander fibroblasts: an application of FBPA clustering
Cited by: 39
Author(s): Shanaz A. Ghandhi, Ayan Sinha, Marianthi Markatou, Sally A. Amundson
Software Mentions: 1
Published: almost 14 years ago

10.1093/jxb/ery137

Comparative transcriptome analysis in Arabidopsis ein2/ore3 and ahk3/ore12 mutants during dark-induced leaf senescence
Cited by: 30
Author(s): Jeong-Sik Kim, Su Jin Park, Il Hwan Lee, Hyosub Chu, Christopher A. Penfold, Jin Hee Kim, Vicky Buchanan‐Wollaston, Hong Gil Nam, Hye Ryun Woo, Pyung Ok Lim
Software Mentions: 1
Published: over 6 years ago

10.18632/aging.203489

Heparanase is a novel biomarker for immune infiltration and prognosis in breast cancer
Cited by: 8
Author(s): Wenjing Yang, Lin Shi, Xiaomin Wang, Guowang Yang
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-017-14549-9

Transforming Growth Factor-beta Regulation of Ephrin Type-A Receptor 4 Signaling in Breast Cancer Cellular Migration
Cited by: 28
Author(s): Ibrahim Y. Hachim, Manuel Villatoro, Lucie Canaff, Mahmood Y. Hachim, Julien Boudreault, Halema Haiub, Suhad Ali, Jean-Jacques Lebrun
Software Mentions: 1
Published: about 7 years ago

10.1186/s12862-015-0431-0

Evolutionary analysis of selective constraints identifies ameloblastin (AMBN) as a potential candidate for amelogenesis imperfecta
Cited by: 25
Author(s): Frédéric Delsuc, Barbara Gasse, Jean‐Yves Sire
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-019-51597-9

Identification of key protein-coding genes and lncRNAs in spontaneous neutrophil apoptosis
Cited by: 12
Author(s): Nan Jiang, Xinzhuo Zhang, Yancheng He, Bo Luo, Chengcheng He, Liang Yu, Jingyuan Zeng, Li Wei, Yujun Xian, Xiaoli Zheng
Software Mentions: 1
Published: about 5 years ago

10.7554/eLife.00362

Acute stress enhances adult rat hippocampal neurogenesis and activation of newborn neurons via secreted astrocytic FGF2
Cited by: 159
Author(s): Elizabeth D. Kirby, Sandra E Muroy, Wayne G Sun, David Covarrubias, Megan Leong, Laurel A Barchas, Daniela Kaufer
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0077889

Microarray Analysis of Tomato’s Early and Late Wound Response Reveals New Regulatory Targets for Leucine Aminopeptidase A
Cited by: 24
Author(s): Melissa A. Scranton, Jonathan H. Fowler, Thomas Girke, Linda L. Walling
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0006792

Genome-Wide Analysis of Histone H3 Lysine9 Modifications in Human Mesenchymal Stem Cell Osteogenic Differentiation
Cited by: 47
Author(s): Jing Tan, Jun Lü, Wei Huang, Zhixiong Dong, Chenfei Kong, Lin Li, Lina Gao, Jianhua Guo, Baiqu Huang
Software Mentions: 1
Published: over 15 years ago