Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
cran: Storm
Write Storm Bolts in R using the Storm Multi-Language ProtocolPapers that mentioned: 62
cran: PopGenome
An Efficient Swiss Army Knife for Population Genomic AnalysesPapers that mentioned: 62
bioconductor: IRanges
Foundation of integer range manipulation in BioconductorPapers that mentioned: 62
pypi: distruct
a package to generate 3d molecular structures from distance constraintsPapers that mentioned: 61
bioconductor: EDASeq
Exploratory Data Analysis and Normalization for RNA-SeqPapers that mentioned: 61
bioconductor: monocle
Clustering, differential expression, and trajectory analysis for single- cell RNA-SeqPapers that mentioned: 60
pypi: MICA
Mutual Information-based Clustering Analysis tool designed for scRNA-seq dataPapers that mentioned: 60
cran: EpiEstim
Estimate Time Varying Reproduction Numbers from Epidemic CurvesPapers that mentioned: 60
pypi: monocle
An async programming framework with a blocking look-alike syntaxPapers that mentioned: 60
pypi: Resource
A Python library concentrated on the Resource layer of RESTful APIs.Papers that mentioned: 59
cran: plotROC
Generate Useful ROC Curve Charts for Print and Interactive UsePapers that mentioned: 59
cran: AMPLE
Shiny Apps to Support Capacity Building on Harvest Control RulesPapers that mentioned: 58
bioconductor: SMAP
A Segmental Maximum A Posteriori Approach to Array-CGH Copy Number ProfilingPapers that mentioned: 58
cran: OneR
One Rule Machine Learning Classification Algorithm with EnhancementsPapers that mentioned: 58
pypi: bzip2
Papers that mentioned: 58cran: ABACUS
Apps Based Activities for Communicating and Understanding StatisticsPapers that mentioned: 58
cran: ggraph
An Implementation of Grammar of Graphics for Graphs and NetworksPapers that mentioned: 58
cran: semPlot
Path Diagrams and Visual Analysis of Various SEM Packages' OutputPapers that mentioned: 57
cran: rehh
Searching for Footprints of Selection using 'Extended Haplotype Homozygosity' Based TestsPapers that mentioned: 57
bioconductor: LOLA
Locus overlap analysis for enrichment of genomic rangesPapers that mentioned: 56
cran: pec
Prediction Error Curves for Risk Prediction Models in Survival AnalysisPapers that mentioned: 56
cran: zCompositions
Treatment of Zeros, Left-Censored and Missing Values in Compositional Data SetsPapers that mentioned: 56
pypi: PTP
PTP parses and ranks the discoveries listed in security tool reports.Papers that mentioned: 56
bioconductor: SCOPE
A normalization and copy number estimation method for single-cell DNA sequencingPapers that mentioned: 56
cran: BAMMtools
Analysis and Visualization of Macroevolutionary Dynamics on Phylogenetic TreesPapers that mentioned: 55
pypi: ICP
A Python module for registering a photo with a database image of the same scenePapers that mentioned: 55
pypi: Watershed
An image segmentation algorithm based on the watershed paradigmPapers that mentioned: 55
cran: BAS
Bayesian Variable Selection and Model Averaging using Bayesian Adaptive SamplingPapers that mentioned: 55
bioconductor: RcisTarget
RcisTarget Identify transcription factor binding motifs enriched on a list of genes or genomic regionsPapers that mentioned: 55
cran: SAVE
Papers that mentioned: 55bioconductor: missMethyl
Analysing Illumina HumanMethylation BeadChip DataPapers that mentioned: 54