Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: glmmML

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/glmmML

Generalized Linear Models with Clustering
34 versions
Latest release: about 1 year ago
6 dependent packages
4,105 downloads last month

Papers Mentioning glmmML 60

10.1186/s13071-017-2054-3
GIS-supported epidemiological analysis on canine Angiostrongylus vasorum and Crenosoma vulpis infections in Germany
Cited by: 41
Author(s): Pavlo Maksimov, Carlos Hermosilla, Anja Taubert, Christoph Staubach, Carola Sauter‐Louis, Franz Josef Conraths, Majda Globokar Vrhovec, Nikola Pantchev
Software Mentions: 12
Published: over 7 years ago
10.1186/s13071-019-3812-1
Modelling temporal dynamics of Culicoides Latreille (Diptera: Ceratopogonidae) populations on Reunion Island (Indian Ocean), vectors of viruses of veterinary importance
Cited by: 8
Author(s): Yannick Grimaud, Hélène Guis, Frédéric Chiroleu, Floriane Boucher, Annelise Tran, Ignace Rakotoarivony, Maxime Duhayon, Catherine Cêtre-Sossah, Olivier Esnault, Éric Cardinale, Claire Garros
Software Mentions: 9
Published: almost 5 years ago
10.1371/journal.pone.0112653
Methodological Quality and Reporting of Generalized Linear Mixed Models in Clinical Medicine (2000–2012): A Systematic Review
Cited by: 77
Author(s): Martí Casals, Montserrat Girabent-Farrés, Josep L. Carrasco
Software Mentions: 7
Published: about 10 years ago
10.1371/journal.pone.0229052
Combined impact of pesticides and other environmental stressors on animal diversity in irrigation ponds
Cited by: 16
Author(s): Hiroshi C. Ito, Hiroaki Shiraishi, Megumi Nakagawa, Noriko Takamura
Software Mentions: 5
Published: over 4 years ago
10.1371/journal.pone.0222690
A method of back-calculating the log odds ratio and standard error of the log odds ratio from the reported group-level risk of disease
Cited by: 2
Author(s): Dapeng Hu, Chong Wang, Annette M. O’Connor
Software Mentions: 5
Published: over 4 years ago
10.1371/journal.pone.0154356
Beyond Correlation in the Detection of Climate Change Impacts: Testing a Mechanistic Hypothesis for Climatic Influence on Sockeye Salmon (Oncorhynchus nerka) Productivity
Cited by: 12
Author(s): Michael D. Tillotson, Thomas P. Quinn
Software Mentions: 5
Published: over 8 years ago
10.1093/aobpla/plw007
Effects of flowering phenology and synchrony on the reproductive success of a long-flowering shrub
Cited by: 18
Author(s): Javier Rodríguez‐Pérez, Anna Traveset
Software Mentions: 4
Published: over 9 years ago
10.3399/bjgpopen17X100677
Delivering integrated child development care in Pakistan: protocol for a clustered randomised trial
Cited by: 7
Author(s): Muhammad Amir Khan, Syeda Somyyah Owais, Claire Blacklock, Shirin Anil, Sehrish Ishaq, Shazia Maqbool, Haroon Khan, Fareed Aslam Minhas, John Walley
Software Mentions: 4
Published: almost 8 years ago
10.1371/journal.pone.0043811
Individual Spatial Responses towards Roads: Implications for Mortality Risk
Cited by: 74
Author(s): Clara Grilo, Joana Sousa, Fernando Ascensão, Hugo M. Matos, Inês Leitão, Paulo Pinheiro, M. C. Nascimento Costa, J. Bernardo, Dyana Reto, Rui Lourenço, Margarida Santos‐Reis, Eloy Revilla
Software Mentions: 3
Published: about 12 years ago
10.1371/journal.pone.0212452
Hybridization between an endangered freshwater fish and an introduced congeneric species and consequent genetic introgression
Cited by: 17
Author(s): Hiroki Hata, Yohsuke Uemura, Kaito Ouchi, Hideki Matsuba
Software Mentions: 3
Published: almost 6 years ago
10.1371/journal.pone.0074429
Lungworm Infections in German Dairy Cattle Herds — Seroprevalence and GIS-Supported Risk Factor Analysis
Cited by: 24
Author(s): Anne-Marie Schunn, Franz J. Conraths, Christoph Staubach, Andreas Fröhlich, Andrew Benjamin Forbes, Thomas Schnieder, Christina Strübe
Software Mentions: 3
Published: about 11 years ago
10.1371/journal.pone.0148636
Spatial Distributions of HIV Infection in an Endemic Area of Western Kenya: Guiding Information for Localized HIV Control and Prevention
Cited by: 12
Author(s): Tomonori Hoshi, Yoshito Fuji, Samson Muuo Nzou, Chihiro Tanigawa, Kamarulzaman Ibrahim, Matilu Mwau, Anne Wanjiru Mwangi, Mohamed Karama, Kenji Hirayama, Kensuke Goto, Satoshi Kaneko
Software Mentions: 3
Published: almost 9 years ago
10.1371/journal.pone.0033246
Effects of Frugivore Preferences and Habitat Heterogeneity on Seed Rain: A Multi-Scale Analysis
Cited by: 24
Author(s): Javier Rodríguez‐Pérez, Asier R. Larrinaga, Luis Santamarı́a
Software Mentions: 3
Published: over 12 years ago
10.1371/journal.pone.0104468
Characteristics of Fishing Operations, Environment and Life History Contributing to Small Cetacean Bycatch in the Northeast Atlantic
Cited by: 12
Author(s): Susie L. Brown, David G. Reid, Emer Rogan
Software Mentions: 3
Published: over 10 years ago
10.1186/1472-6963-10-145
Quality of care for patients with type 2 diabetes in general practice according to patients' ethnic background: a cross-sectional study from Oslo, Norway
Cited by: 35
Author(s): Anh Thi Tran, Lien My Diep, John G. Cooper, Tor Claudi, Jørúnd Straand, Kåre I. Birkeland, Wibeche Ingskog, Anne Karen Jenum
Software Mentions: 3
Published: over 14 years ago
10.1038/s41598-018-25701-4
Dissection of niche competition between introduced and indigenous arbuscular mycorrhizal fungi with respect to soybean yield responses
Cited by: 35
Author(s): Rieko Niwa, Toshie Koyama, Takumi Sato, Katsuki Adachi, Keitaro Tawaraya, Shusei Sato, Hideki Hirakawa, Shigenobu Yoshida, Tatsuhiro Ezawa
Software Mentions: 3
Published: over 6 years ago
10.2196/ijmr.2585
Aftershocks Associated With Impaired Health Caused by the Great East Japan Disaster Among Youth Across Japan: A National Cross-Sectional Survey
Cited by: 6
Author(s): Takashi Sugimoto, Tomohiro Shinozaki, Yuki Miyamoto
Software Mentions: 2
Published: almost 11 years ago
10.3390/vaccines9080824
Effect of Professional and Extra-Professional Exposure on Seroprevalence of SARS-CoV-2 Infection among Healthcare Workers of the French Alps: A Multicentric Cross-Sectional Study
Cited by: 10
Author(s): V. Vitrat, Alexis Maillard, Alain Raybaud, C. Wackenheim, B. Chanzy, Sophie Nguyen, A. Valran, Alexie Bosch, Marion Noret, Tristan Delory
Software Mentions: 2
Published: over 3 years ago
10.1371/journal.pone.0199388
Transmission of rhinovirus in the Utah BIG-LoVE families: Consequences of age and household structure
Cited by: 12
Author(s): Frederick R. Adler, Chris Stockmann, Kwabena Krow Ampofo, Andrew T. Pavia, Carrie L. Byington
Software Mentions: 2
Published: over 6 years ago
10.1371/journal.pone.0088842
Influence of Aesthetic Appreciation of Wildlife Species on Attitudes towards Their Conservation in Kenyan Agropastoralist Communities
Cited by: 89
Author(s): Joana Roque de Pinho, Clara Grilo, Randall B. Boone, Kathleen A. Galvin, Jeffrey G. Snodgrass
Software Mentions: 2
Published: almost 11 years ago
10.1371/journal.pone.0031460
To Fish or Not to Fish: Factors at Multiple Scales Affecting Artisanal Fishers' Readiness to Exit a Declining Fishery
Cited by: 159
Author(s): Tim M. Daw, Joshua E. Cinner, Tim R. McClanahan, Katrina Brown, Selina M. Stead, Nicholas A. J. Graham, Joseph Maina
Software Mentions: 2
Published: almost 13 years ago
10.1371/journal.pone.0250517
Effectiveness of time-varying echo information for target geometry identification in bat-inspired human echolocation
Cited by: 2
Author(s): Miwa Sumiya, Kaoru Ashihara, Hiroki Watanabe, Tsutomu Terada, Shizuko Hiryu, Hiroshi Ando
Software Mentions: 2
Published: over 3 years ago
10.1371/journal.pone.0167233
Genetic Structure and Potential Environmental Determinants of Local Genetic Diversity in Japanese Honeybees (Apis cerana japonica)
Cited by: 11
Author(s): Teruyoshi Nagamitsu, Mika Yasuda, Fuki Saito-Morooka, Maki Inoue, Mio Nishiyama, Koichi Goka, Shinji Sugiura, Kaoru Maetô, Kimiko Okabe, Hisatomo Taki
Software Mentions: 2
Published: almost 8 years ago
10.1371/journal.pone.0049833
BCG Vaccination Reduces Risk of Tuberculosis Infection in Vaccinated Badgers and Unvaccinated Badger Cubs
Cited by: 110
Author(s): Stephen P. Carter, Mark A. Chambers, Stephen Rushton, Mark Shirley, Pia Schuchert, Stéphane Pietravalle, Alistair Murray, Fiona Rogers, G. Gettinby, Graham C. Smith, Richard J. Delahay, R. Glyn Hewinson, Robbie A. McDonald
Software Mentions: 2
Published: almost 12 years ago
10.1098/rsos.150720
Sexual selection of male parental care in giant water bugs
Cited by: 14
Author(s): Shin‐ya Ohba, Noboru Okuda, Shinichi Kudo
Software Mentions: 2
Published: over 8 years ago
10.1038/s41598-020-58381-0
Intraspecific differences in seed dispersal caused by differences in social rank and mediated by food availability
Cited by: 6
Author(s): Yamato Tsuji, Ahimsa Campos‐Arceiz, S Prasad, Shumpei Kitamura, Kim R. McConkey
Software Mentions: 2
Published: almost 5 years ago
10.1038/s41598-021-94505-w
Caste development and sex ratio of the Ryukyu drywood termite Neotermes sugioi and its potential mechanisms
Cited by: 3
Author(s): Yasushi Miyaguni, Ayaka Agarie, Koji Sugio, Kazuki Tsuji, Keiko Kobayashi
Software Mentions: 2
Published: over 3 years ago
10.1186/1476-072X-9-58
Identifying malaria vector breeding habitats with remote sensing data and terrain-based landscape indices in Zambia
Cited by: 40
Author(s): Julie A. Clennon, Aniset Kamanga, Mulenga Musapa, Clive Shiff, Gregory E. Glass
Software Mentions: 2
Published: almost 15 years ago
10.1371/journal.pntd.0002852
Using Molecular Epidemiology to Track Toxoplasma gondii from Terrestrial Carnivores to Marine Hosts: Implications for Public Health and Conservation
Cited by: 42
Author(s): Elizabeth VanWormer, Melissa A. Miller, Patricia A. Conrad, Michael E. Grigg, Daniel Rejmanek, Tim E. Carpenter, Jonna A. K. Mazet
Software Mentions: 1
Published: over 10 years ago
10.7717/peerj.601
Nest-building behavior of Monk Parakeets and insights into potential mechanisms for reducing damage to utility poles
Cited by: 10
Author(s): Kevin R. Burgio, Margaret A. Rubega, Diego Sustaita
Software Mentions: 1
Published: about 10 years ago
10.1038/s41598-020-73232-8
Herbivorous damselfishes expand their territories after causing white scars on Porites corals
Cited by: 5
Author(s): Hiroki Hata, Shota Takano, Hiroyuki Masuhara
Software Mentions: 1
Published: about 4 years ago
10.1371/journal.pone.0026553
A Vicious Cycle: A Cross-Sectional Study of Canine Tail-Chasing and Human Responses to It, Using a Free Video-Sharing Website
Cited by: 48
Author(s): Charlotte C. Burn
Software Mentions: 1
Published: about 13 years ago
10.7717/peerj.1753
Adverse events associated with incretin-based drugs in Japanese spontaneous reports: a mixed effects logistic regression model
Cited by: 6
Author(s): Daichi Narushima, Yohei Kawasaki, Shoji Takamatsu, Hiroshi Yamada
Software Mentions: 1
Published: over 8 years ago
10.1038/s41598-021-88967-1
Sleep contributes to preference for novel food odours in Drosophila melanogaster
Cited by: 1
Author(s): Fuminori Tanizawa, Hiroyuki Takemoto
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pone.0062730
Effects of an Electric Field on White Sharks: In Situ Testing of an Electric Deterrent
Cited by: 33
Author(s): Charlie Huveneers, Paul Rogers, Jayson M. Semmens, Crystal Beckmann, Alison A. Kock, Brad Page, Simon Goldsworthy
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0002692
Major Histocompatibility Complex Based Resistance to a Common Bacterial Pathogen of Amphibians
Cited by: 40
Author(s): Seth M. Barribeau, Jandouwe Villinger, Bruce Waldman
Software Mentions: 1
Published: over 16 years ago
10.1371/journal.pone.0079095
Geographical Pattern and Environmental Correlates of Regional-Scale General Flowering in Peninsular Malaysia
Cited by: 16
Author(s): Shusuke Numata, Masatoshi Yasuda, Ryo Suzuki, Tetsurō Hosaka, Nur Supardi Md. Noor, Christine Fletcher, Mazlan Hashim
Software Mentions: 1
Published: about 11 years ago
10.1371/journal.pone.0038387
Visual Recognition of Age Class and Preference for Infantile Features: Implications for Species-Specific vs Universal Cognitive Traits in Primates
Cited by: 15
Author(s): Anna Sato, Hiroki Koda, Alban Lemasson, Sumiharu Nagumo, Nobuo Masataka
Software Mentions: 1
Published: over 12 years ago
10.3390/ijerph16061073
Comparing the Effects of Road, Railway, and Aircraft Noise on Sleep: Exposure–Response Relationships from Pooled Data of Three Laboratory Studies
Cited by: 28
Author(s): Eva‐Maria Elmenhorst, Barbara Griefahn, Vinzent Rolny, Mathias Basner
Software Mentions: 1
Published: over 5 years ago
10.1186/1999-3110-55-3
Sex expression and inbreeding depression in progeny derived from an extraordinary hermaphrodite of Salix subfragilis
Cited by: 4
Author(s): Teruyoshi Nagamitsu, Norihiro Futamura
Software Mentions: 1
Published: almost 11 years ago
10.1002/ece3.295
Waterfalls drive parallel evolution in a freshwater goby
Cited by: 13
Author(s): Yuichi Kano, Shinichi Nishida, Jun Nakajima
Software Mentions: 1
Published: over 12 years ago
10.1002/ece3.5400
The influence of fire frequency on the structure and botanical composition of savanna ecosystems
Cited by: 20
Author(s): Natasha Ribeiro, Gernot Ruecker, Navashni Govender, Valério António Macandza, Aurélio de Jesus Rodrigues Pais, Domingos Machava, Aniceto Chaúque, Sá Nogueira Lisboa, Romana Rombe Bandeira
Software Mentions: 1
Published: over 5 years ago
10.1002/ece3.6262
Functional diversity and trade‐offs in divergent antipredator morphologies in herbivorous insects
Cited by: 12
Author(s): Tadashi Shinohara, Takami Yasuda
Software Mentions: 1
Published: over 4 years ago
10.1002/ece3.578
Population admixture and high larval viability among urban toads
Cited by: 9
Author(s): Kazuko Hase, Naruo Nikoh, Muneaki Shimada
Software Mentions: 1
Published: over 11 years ago
10.3389/fpsyg.2017.00187
Passage of Time Judgments Is Relative to Temporal Expectation
Cited by: 15
Author(s): Ryosuke Tanaka, Yuko Yotsumoto
Software Mentions: 1
Published: almost 8 years ago
10.1186/1746-6148-6-1
Risk factors associated with within-herd transmission of bovine leukemia virus on dairy farms in Japan
Cited by: 63
Author(s): Sota Kobayashi, Toshiyuki Tsutsui, Takehisa Yamamoto, Yoko Hayama, Ken-ichiro Kameyama, Misako Konishi, Kenji Murakami
Software Mentions: 1
Published: almost 15 years ago
10.1098/rspb.2021.0787
Self and non-self recognition affects clonal reproduction and competition in the pea aphid
Cited by: 4
Author(s): Yang Li, Shin‐ichi Akimoto
Software Mentions: 1
Published: over 3 years ago
10.1177/0962280215592269
Performance of methods for meta-analysis of diagnostic test accuracy with few studies or sparse data
Cited by: 155
Author(s): Yemisi Takwoingi, Boliang Guo, Richard D Riley, Jonathan J Deeks
Software Mentions: 1
Published: over 9 years ago
10.1098/rsos.161029
Eversion and withdrawal of an intromittent organ before sexual maturation prepares male beetles for copulation
Cited by: 1
Author(s): Yuichi Matsumura, Takuya Kubo
Software Mentions: 1
Published: over 7 years ago
10.1098/rsos.181497
Orangutans ( <i>Pongo pygmaeus</i> ) recognize their own past actions
Cited by: 4
Author(s): Yuki Hanazuka, Mika Shimizu, H. Takaoka, Akira Midorikawa
Software Mentions: 1
Published: almost 6 years ago
10.1186/s12874-018-0517-7
Reference effect measures for quantifying, comparing and visualizing variation from random and fixed effects in non-normal multilevel models, with applications to site variation in medical procedure use and outcomes
Cited by: 17
Author(s): Thomas J. Glorioso, Gary K. Grunwald, P. Michael Ho, Thomas M. Maddox
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-019-53727-9
Effects of culling intensity on diel and seasonal activity patterns of sika deer (Cervus nippon)
Cited by: 12
Author(s): Takashi Ikeda, Hiroshi Takahashi, Hiromasa Igota, Yukiko Matsuura, Munemitsu Azumaya, Terutoyo Yoshida, Koichi Kaji
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.pone.0115057
Combining Methods to Describe Important Marine Habitats for Top Predators: Application to Identify Biological Hotspots in Tropical Waters
Cited by: 11
Author(s): Laurie Thiers, Maité Louzao, Vincent Ridoux, Matthieu Le Corre, Sébastien Jaquemet, Henri Weimerskirch
Software Mentions: 1
Published: almost 10 years ago
10.1371/journal.pone.0120393
Variation in Pollen-Donor Composition among Pollinators in an Entomophilous Tree Species, Castanea crenata, Revealed by Single-Pollen Genotyping
Cited by: 30
Author(s): Yoichi Hasegawa, Yoshihisa Suyama, Kenji Seiwa
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0061156
Impediment to Symbiosis Establishment between Giant Clams and Symbiodinium Algae Due to Sterilization of Seawater
Cited by: 7
Author(s): Takeo Kurihara, Hideaki Yamada, Ken Inoue, Kenji Iwai, Masayuki Hatta
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pntd.0001423
An Unexpected Recurrent Transmission of Rift Valley Fever Virus in Cattle in a Temperate and Mountainous Area of Madagascar
Cited by: 47
Author(s): Véronique Chevalier, Toky Rakotondrafara, Marion Jourdan, Jean‐Michel Heraud, Harena Rasamoelina Andriamanivo, Benoı̂t Durand, Julie Ravaomanana, Pierre E. Rollin, René Rizzoli
Software Mentions: 1
Published: almost 13 years ago
10.1371/journal.pntd.0003055
Emergence of Coxiella burnetii in Ruminants on Reunion Island? Prevalence and Risk Factors
Cited by: 22
Author(s): Éric Cardinale, Olivier Esnault, Marina Béral, Florence Nazé, Alain Michault
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0205821
Do honeybees (Apis mellifera) differentiate between different pollen types?
Cited by: 12
Author(s): Fabian A. Ruedenauer, Christine Wöhrle, Johannes Spaethe, Sara D. Leonhardt
Software Mentions: 1
Published: about 6 years ago
10.1673/031.013.3801
Colony Fusion in a Parthenogenetic Ant,Pristomyrmexpunctatus
Cited by: 7
Author(s): Show Satow, Toshiyuki Satoh, Tadao Hirota
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0197122
Assessment of the behaviour and survival of nematodes under low oxygen concentrations
Cited by: 18
Author(s): Hiromi Kitazume, Mehmet Dayı, Ryusei Tanaka, Taisei Kikuchi
Software Mentions: 1
Published: over 6 years ago