Ecosyste.ms: Papers

10.1186/1471-2105-15-337

Bison: bisulfite alignment on nodes of a cluster
Cited by: 12
Author(s): Devon P. Ryan, Dan Ehninger
Software Mentions: 6
Published: about 10 years ago

10.3389/fpls.2020.574982

Metabolic, Enzymatic Activity, and Transcriptomic Analysis Reveals the Mechanism Underlying the Lack of Characteristic Floral Scent in Apricot Mei Varieties
Cited by: 6
Author(s): Fei Bao, Tengxun Zhang, Anqi Ding, Aiqin Ding, Weiru Yang, Jia Wang, Tangren Cheng, Qixiang Zhang
Software Mentions: 4
Published: about 4 years ago

10.1186/s13075-021-02530-x

Biomechanical stress in the context of competitive sports training triggers enthesitis
Cited by: 7
Author(s): Dávid Simon, Arnd Kleyer, Sara Bayat, Johannes Knitza, Larissa Valor‐Méndez, M. Schweiger, Georg Schett, Koray Taşçılar, Axel J. Hueber
Software Mentions: 4
Published: over 3 years ago

10.2196/18839

Computer-Controlled Virtual Humans in Patient-Facing Systems: Systematic Review and Meta-Analysis
Cited by: 29
Author(s): Debaleena Chattopadhyay, Tengteng Ma, Hasti Sharifi, Pamela Martyn‐Nemeth
Software Mentions: 4
Published: over 4 years ago

10.1038/s42003-021-02179-x

Multi-species and multi-tissue methylation clocks for age estimation in toothed whales and dolphins
Cited by: 33
Author(s): Todd R. Robeck, Zhe Fei, Ake T. Lu, Amin Haghani, Eve Jourdain, Joseph A. Zoller, Caesar Z. Li, Karen J. Steinman, Stacy DiRocco, Todd L. Schmitt, S. B. Osborn, William Van Bonn, Etsuko Katsumata, June Mergl, Javier Almunia, Magdalena Rodríguez, Martin Haulena, Christopher Dold, Steve Horvath
Software Mentions: 3
Published: over 3 years ago

10.1186/s13059-021-02305-2

Identification of pathogenic variants in cancer genes using base editing screens with editing efficiency correction
Cited by: 19
Author(s): Changcai Huang, Guangyu Li, Jiayu Wu, Junbo Liang, Xiaoyue Wang
Software Mentions: 3
Published: over 3 years ago

10.1186/1471-2164-15-879

A robust estimation of exon expression to identify alternative spliced genes applied to human tissues and cancer samples
Cited by: 13
Author(s): Alberto Risueño, Beatriz Rosón-Burgo, Anna Dolnik, Jesús María Hernández-Rivas, Lars Bullinger, Javier De Las Rivas
Software Mentions: 3
Published: about 10 years ago

10.1055/s-0038-1675577

Cancer-Associated Thrombosis: Beyond Clinical Practice Guidelines—A Multidisciplinary (SEMI–SEOM–SETH) Expert Consensus
Cited by: 17
Author(s): Vanessa Pachón, Javier Trujillo‐Santos, Pere Pascual i Domènech, Enrique Gallardo, Carme Font, José Ramón González‐Porras, Pedro Pérez‐Segura, Ana Maestre, José Mateo, Andrés Muñoz, M.L. Peris, Ramón Lecumberri
Software Mentions: 2
Published: about 6 years ago

10.3389/fpsyg.2018.00600

Factorial Structure and Preliminary Validation of the Schema Mode Inventory for Eating Disorders (SMI-ED)
Cited by: 19
Author(s): Susan Simpson, Giada Pietrabissa, Alessandro Rossi, Tahnee Seychell, Gian Mauro Manzoni, Calum Munro, Julian Nesci, Gianluca Castelnuovo
Software Mentions: 2
Published: over 6 years ago

10.1186/1471-2105-13-S4-S21

BEAT: Bioinformatics Exon Array Tool to store, analyze and visualize Affymetrix GeneChip Human Exon Array data from disease experiments
Cited by: 5
Author(s): Arianna Consiglio, Massimo Carella, Giorgio De, Gianfranco Delle Foglie, Candida Giovannelli, Giorgio Grillo, Massimo Ianigro, Flavio Licciulli, Orazio Palumbo, Ada Piepoli, Elena Ranieri, Sabino Liuni
Software Mentions: 2
Published: over 12 years ago

10.1186/s13052-018-0521-x

Egg introduction during complementary feeding according to allergic risk: not just for peanuts!
Cited by: 3
Author(s): Elvira Verduci, Annamaria Bianchi, Marta Brambilla, Mauro Calvani
Software Mentions: 2
Published: over 6 years ago

10.3390/genes12020283

Estimating Copy-Number Proportions: The Comeback of Sanger Sequencing
Cited by: 7
Author(s): Eyal Seroussi
Software Mentions: 2
Published: almost 4 years ago

10.1164/rccm.202009-3448OC

Inflammatory Endotype–associated Airway Microbiome in Chronic Obstructive Pulmonary Disease Clinical Stability and Exacerbations: A Multicohort Longitudinal Analysis
Cited by: 76
Author(s): Zhang Wang, Nicholas Locantore, Koirobi Haldar, Mohammadali Yavari Ramsheh, Augusta Beech, Wei Ma, James R. Brown, Ruth Tal‐Singer, Michael R. Barer, Mona Bafadhel, Gavin C. Donaldson, Jadwiga A. Wedzicha, Dave Singh, Tom Wilkinson, Bruce E. Miller, Christopher Brightling
Software Mentions: 2
Published: over 3 years ago

10.1074/jbc.M117.782433

Immunoglobulin domain interface exchange as a platform technology for the generation of Fc heterodimers and bispecific antibodies
Cited by: 31
Author(s): Darko Skegro, Cian Stutz, Romain Ollier, Emelie Svensson, Paul Wassmann, Florence Bourquin, Thierry Monney, Sunitha Gn, Stanislas Blein
Software Mentions: 2
Published: over 7 years ago

10.1074/jbc.RA119.012335

A single mutation increases heavy-chain heterodimer assembly of bispecific antibodies by inducing structural disorder in one homodimer species
Cited by: 6
Author(s): Cian Stutz, Stanislas Blein
Software Mentions: 2
Published: over 4 years ago

10.1177/0013916516634403

Neighborhood Quality and Attachment
Cited by: 26
Author(s): Wouter Poortinga, Tatiana Calve, Nikki Jones, Simon Charles Lannon, Tabitha Rees, Sarah Rodgers, Ronan A Lyons, Rhodri Johnson
Software Mentions: 2
Published: over 8 years ago

10.3390/s140100575

On the Capability of Smartphones to Perform as Communication Gateways in Medical Wireless Personal Area Networks
Cited by: 33
Author(s): M. J. Morón, Rafael Marcos Luque, E. Casilari
Software Mentions: 2
Published: almost 11 years ago

10.1186/s12919-018-0098-9

Proceedings of the 2nd BEAT-PCD conference and 3rd PCD training school: part 1
Cited by: 12
Author(s): Florian S. Halbeisen, Claire Hogg, Mikkel Christian Alanin, Zuzanna Bukowy-Bieryłło, Francisco Dası́, Julie Duncan, Amanda Friend, Myrofora Goutaki, Claire Jackson, Victoria Keenan, Amanda Harris, Robert A. Hirst, Philipp Latzin, Gemma Marsh, Kim G. Nielsen, Dominic P. Norris, Daniel Pellicer, Ana Reula, Bruna Rubbo, Nisreen Rumman, Amelia Shoemark, Woolf T. Walker, Claudia E. Kuehni, Jane S. Lucas
Software Mentions: 2
Published: over 6 years ago

10.1155/2012/503254

Bedside Ultrasound in Resuscitation and the Rapid Ultrasound in Shock Protocol
Cited by: 97
Author(s): Dina Seif, Phillips Perera, Thomas Mailhot, David C. Riley, Diku Mandavia
Software Mentions: 2
Published: almost 13 years ago

10.3389/fphar.2019.00301

Trial Refresh: A Case for an Adaptive Platform Trial for Pulmonary Exacerbations of Cystic Fibrosis
Cited by: 6
Author(s): André Schultz, Julie A. Marsh, Benjamin R. Saville, Richard Norman, Peter G. Middleton, Hugh Greville, M. Bellgard, Scott M. Berry, Tom Snelling
Software Mentions: 1
Published: over 5 years ago

10.3389/fpsyg.2016.01419

Infants Encode Phonetic Detail during Cross-Situational Word Learning
Cited by: 13
Author(s): Paola Escudero, Karen E. Mulak, Haley A. Vlach
Software Mentions: 1
Published: about 8 years ago

10.3389/fpsyg.2017.00780

FMRI Study of Neural Responses to Implicit Infant Emotion in Anorexia Nervosa
Cited by: 12
Author(s): Jenni Leppänen, Valentina Cardi, Yannis Paloyelis, Andrew Simmons, Kate Tchanturia, Janet Treasure
Software Mentions: 1
Published: over 7 years ago

10.3389/fpsyg.2015.01608

Does compulsive behavior in Anorexia Nervosa resemble an addiction? A qualitative investigation
Cited by: 31
Author(s): Lauren R. Godier, Rebecca J. Park
Software Mentions: 1
Published: about 9 years ago

10.1186/s13059-020-02088-y

The chromosome-level wintersweet (Chimonanthus praecox) genome provides insights into floral scent biosynthesis and flowering in winter
Cited by: 61
Author(s): Shang Junzhong, Jing‐Pu Tian, Hui Cheng, Qiaomu Yan, Lai Li, Abbas Jamal, Zhongping Xu, Xinghua Lin, Christopher Saski, Shuangxia Jin, Kaige Zhao, Xiu‐Qun Liu, Longqing Chen
Software Mentions: 1
Published: over 4 years ago

10.1186/s40337-021-00485-7

Exploring carer burden amongst those caring for a child or adolescent with an eating disorder during COVID-19
Cited by: 5
Author(s): Kristen Maunder, Fiona McNicholas
Software Mentions: 1
Published: about 3 years ago

10.1038/s41598-019-42920-5

I-BEAT: Ultrasonic method for online measurement of the energy distribution of a single ion bunch
Cited by: 18
Author(s): Daniel Haffa, Rong Yang, Bin Ji, Sebastian Lehrack, Florian‐Emanuel Brack, Hao Ding, Franz Siegfried Englbrecht, Ying Gao, J. W. Gebhard, Max Gilljohann, Johannes Götzfried, Jens Hartmann, Sebastian Herr, P. Hilz, Stephan Kraft, Christian Kreuzer, Florian Kroll, Florian Lindner, Josefine Metzkes-Ng, Tobias Ostermayr, Enrico Ridente, Thomas F. Rösch, G. Schilling, Hans-Peter Schlenvoigt, Martin Speicher, Derya Taray, Matthias Würl, Karl Zeil, U. Schramm, Stefan Karsch, Katia Parodi, Paul R. Bolton, W. Assmann, Jörg Schreiber
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-97393-2

A new approach to produce IgG4-like bispecific antibodies
Cited by: 1
Author(s): Caizhi Zhao, Wei Zhang, Guihua Gong, Liping Xie, Mingwei Wang, Youjia Hu
Software Mentions: 1
Published: about 3 years ago

10.3390/s19143061

BEAT: Beacon Inter-Reception Time Ensured Adaptive Transmission for Vehicle-to-Vehicle Safety Communication
Cited by: 11
Author(s): Sunghwa Son, Kyung‐Joon Park
Software Mentions: 1
Published: over 5 years ago

10.3390/s21175686

On the Effectiveness of Impedance-Based Fingerprint Presentation Attack Detection
Cited by: 6
Author(s): Jascha Kolberg, Daniel Gläsner, Ralph Breithaupt, Marta Gómez-Barrero, Jörg Reinhold, Arndt von Twickel, Christoph Busch
Software Mentions: 1
Published: over 3 years ago

10.1186/s13643-019-1230-2

The effectiveness of psychological interventions for fatigue in cancer survivors: systematic review of randomised controlled trials
Cited by: 46
Author(s): Teresa Corbett, AnnMarie Groarke, Declan Devane, Ewan Carr, Jane C. Walsh, Brian E. McGuire
Software Mentions: 1
Published: almost 5 years ago

10.1186/s13195-019-0503-2

Early recognition and treatment of neuropsychiatric symptoms to improve quality of life in early Alzheimer’s disease: protocol of the BEAT-IT study
Cited by: 13
Author(s): Willem S. Eikelboom, Ellen H. Singleton, Esther van den Berg, Michiel Coesmans, Francesco Mattace-Raso, Rozemarijn L van Bruchem, Jeannette A. Goudzwaard, Frank Jan de Jong, Marc Koopmanschap, Tom den Heijer, Jan Driesen, Lilian J.H.M. Vroegindeweij, Elsbeth C Thomeer, Susanne E Hoogers, Anke A. Dijkstra, Sytse U. Zuidema, Yolande A.L. Pijnenburg, Philip Scheltens, John C. van Swieten, Rik Ossenkoppele, Janne M. Papma
Software Mentions: 1
Published: over 5 years ago

10.1186/1756-9966-29-58

Magnitude of benefit of the addition of bevacizumab to first-line chemotherapy for metastatic colorectal cancer: meta-analysis of randomized clinical trials
Cited by: 49
Author(s): Fotios Loupakis, Emilio Bria, Vanja Vaccaro, Federica Cuppone, Michèle Milella, Paolo Carlini, Chiara Cremolini, Lisa Salvatore, Alfredo Falcone, Paola Muti, Isabella Sperduti, Diana Giannarelli, Francesco Cognetti
Software Mentions: 1
Published: over 14 years ago

10.1186/s12942-020-00254-w

Children’s outdoor active mobility behaviour and neighbourhood safety: a systematic review in measurement methods and future research directions
Cited by: 10
Author(s): Roula Zougheibe, Jianhong Xia, Ashraf Dewan, Ori Gudes, Richard Norman
Software Mentions: 1
Published: almost 4 years ago

10.2196/15015

A Lower Leg Physical Activity Intervention for Individuals With Chronic Venous Leg Ulcers: Randomized Controlled Trial
Cited by: 6
Author(s): Teresa J. Kelechi, Margaret Prentice, Martina Mueller, Mohan Madisetti, Alexey Vertegel
Software Mentions: 1
Published: over 4 years ago

10.1155/2019/4516041

Immunoglobulin Gamma-Like Therapeutic Bispecific Antibody Formats for Tumor Therapy
Cited by: 9
Author(s): Shixue Chen, Lingling Li, Fan Zhang, Yu Wang, Yi Hu, Z. H. Lei
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13063-020-04391-2

Safety and efficacy of belimumab after B cell depletion therapy in systemic LUPUS erythematosus (BEAT-LUPUS) trial: statistical analysis plan
Cited by: 4
Author(s): Patrick Müller, Kashfia Chowdhury, Caroline Gordon, Michael R. Ehrenstein, Caroline J Doré
Software Mentions: 1
Published: over 4 years ago

10.3390/antib8030041

Bispecific T-Cell Redirection versus Chimeric Antigen Receptor (CAR)-T Cells as Approaches to Kill Cancer Cells
Cited by: 82
Author(s): William R. Strohl, Michael F. Naso
Software Mentions: 1
Published: over 5 years ago

10.1016/j.appet.2019.104480

Basal ganglia volume and shape in anorexia nervosa
Cited by: 6
Author(s): Jenni Leppänen, Valentina Cardi, Felicity Sedgewick, Janet Treasure, Kate Tchanturia
Software Mentions: 1
Published: almost 5 years ago

10.1186/1471-2407-13-611

Bifractionated CPT-11 with LV5FU2 infusion (FOLFIRI-3) in combination with bevacizumab: clinical outcomes in first-line metastatic colorectal cancers according to plasma angiopoietin-2 levels
Cited by: 18
Author(s): Stéfano Kim, Erion Dobi, Marine Jary, Franck Monnien, Elsa Curtit, Thierry Nguyen, Zaher Lakkis, Bruno Heyd, S. Fratté, D. Cléau, Najib Lamfichekh, Virginie Nerich, Boris Guiu, Martin Demarchi, Christophe Borg
Software Mentions: 1
Published: almost 11 years ago

10.1186/1471-2407-14-323

Bevacizumab with 5-fluorouracil, leucovorin, and oxaliplatin versus bevacizumab with capecitabine and oxaliplatin for metastatic colorectal carcinoma: results of a large registry-based cohort analysis
Cited by: 16
Author(s): Tomáš Büchler, Tomáš Pavlík, Bohuslav Melichar, Zbyněk Bortlíček, Zuzana Ušiaková, Ladislav Dušek, Igor Kiss, M Kohoutek, V. Benešová, Rostislav Vyzula, Jitka Abrahámová, Radka Obermannová
Software Mentions: 1
Published: over 10 years ago

10.1186/s12876-015-0266-6

Efficacy of bevacizumab and chemotherapy in the first-line treatment of metastatic colorectal cancer: broadening KRAS-focused clinical view
Cited by: 16
Author(s): Beatrix Bencsiková, Zbyněk Bortlíček, Jana Halámková, Lenka Ostřížková, Igor Kiss, Bohuslav Melichar, Tomáš Pavlík, Ladislav Dušek, Dalibor Valík, Rostislav Vyzula, Lenka Zdražilová-Dubská
Software Mentions: 1
Published: over 9 years ago

10.1186/s12874-019-0843-4

Can a ‘consent to contact’ community help research teams overcome barriers to recruitment? The development and impact of the ‘Research for the Future’ community
Cited by: 7
Author(s): Katherine Grady, Martin G. Gibson, Peter Bower
Software Mentions: 1
Published: about 5 years ago

10.1186/s12919-016-0067-0

Proceedings of the COST action BM1407 inaugural conference BEAT-PCD: translational research in primary ciliary dyskinesia - bench, bedside, and population perspectives
Cited by: 24
Author(s): Bruna Rubbo, Laura Behan, Eleonora Dehlink, Myrofora Goutaki, Claire Hogg, Panayiotis Kouis, Claudia E. Kuehni, Philipp Latzin, Kim G. Nielsen, Dominic P. Norris, Sylvia Nyilas, Mareike Price, Jane S. Lucas
Software Mentions: 1
Published: about 8 years ago

10.1186/s12919-018-0161-6

Proceedings of the 3rd BEAT-PCD Conference and 4th PCD Training School
Cited by: 5
Author(s): Hannah Farley, Bruna Rubbo, Zuzanna Bukowy-Bieryłło, Mahmoud R Fassad, Myrofora Goutaki, Katharine Harman, Claire Hogg, Claudia E. Kuehni, Susana S. Lopes, Kim G. Nielsen, Dominic P. Norris, Ana Reula, Nisreen Rumman, Amelia Shoemark, Hannah Wilkins, Agatha Wisse, Jane S. Lucas, June K. Marthin
Software Mentions: 1
Published: almost 6 years ago

10.1136/bmjopen-2019-032569

Belimumab after B cell depletion therapy in patients with systemic lupus erythematosus (BEAT Lupus) protocol: a prospective multicentre, double-blind, randomised, placebo-controlled, 52-week phase II clinical trial
Cited by: 30
Author(s): Alexis Jones, Patrick Müller, Caroline J Doré, Felicia Ikeji, Emilia Caverly, Kashfia Chowdhury, David Isenberg, Caroline Gordon, Michael R. Ehrenstein
Software Mentions: 1
Published: almost 5 years ago

10.3390/ma14030544

Warsaw Glacial Quartz Sand with Different Grain-Size Characteristics and Its Shear Wave Velocity from Various Interpretation Methods of BET
Cited by: 5
Author(s): Katarzyna Gabryś, Emil Soból, Wojciech Sas, Raimondas Šadzevičius, Rytis Skominas
Software Mentions: 1
Published: almost 4 years ago

10.3390/ma14143771

Coherent Investigation on a Smart Kinetic Wooden Façade Based on Material Passport Concepts and Environmental Profile Inquiry
Cited by: 14
Author(s): Amjad Almusaed, İbrahim Yitmen, Asaad Almsaad, İlknur Akıner, Muhammed Ernur Akıner
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0154689

A Novel Computational Tool for Mining Real-Life Data: Application in the Metastatic Colorectal Cancer Care Setting
Cited by: 0
Author(s): Nava Siegelmann‐Danieli, Ariel Farkash, Itzhak Katzir, Janet Vesterman Landes, Hadas Rotem Rabinovich, Yossef Lomnicky, Boaz Carmeli, Naama Parush-Shear-Yashuv
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0133827

Emotional Processing, Recognition, Empathy and Evoked Facial Expression in Eating Disorders: An Experimental Study to Map Deficits in Social Cognition
Cited by: 39
Author(s): Valentina Cardi, Freya Corfield, Jenni Leppänen, Charlotte Rhind, Stephanie Deriziotis, Alexandra Hadjimichalis, Rebecca Hibbs, Nadia Micali, Janet Treasure
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0113191

Emotional Processing of Infants Displays in Eating Disorders
Cited by: 12
Author(s): Valentina Cardi, Freya Corfield, Jenni Leppänen, Charlotte Rhind, Stephanie Deriziotis, Alexandra Hadjimichalis, Rebecca Hibbs, Nadia Micali, Janet Treasure
Software Mentions: 1
Published: almost 10 years ago

10.3390/cells9122584

The Beta3 Adrenergic Receptor in Healthy and Pathological Cardiovascular Tissues
Cited by: 34
Author(s): Lauriane Y. M. Michel, Charlotte Farah, Jean‐Luc Balligand
Software Mentions: 1
Published: almost 4 years ago

10.7759/cureus.4612

Cardiac Ultrasound in the Intensive Care Unit: A Review
Cited by: 8
Author(s): Ashlesha Patel, Amar R Patel, Satwant Singh, Sandeep Singh, Imran Khawaja
Software Mentions: 1
Published: over 5 years ago

10.3389/fmed.2020.00316

B Cell Therapy in Systemic Lupus Erythematosus: From Rationale to Clinical Practice
Cited by: 44
Author(s): Ioannis Parodis, Marit Stockfelt, Christopher Sjöwall
Software Mentions: 1
Published: over 4 years ago

10.3389/fped.2020.00518

Nutrition and Avoidance Diets in Children With Food Allergy
Cited by: 5
Author(s): Domenico Corica, Tommaso Aversa, Lucia Caminiti, Fortunato Lombardo, Małgorzata Waśniewska, Giovanni Battista Pajno
Software Mentions: 1
Published: about 4 years ago