Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: MICA
https://packages.ecosyste.ms/registries/pypi.org/packages/MICA
Mutual Information-based Clustering Analysis tool designed for scRNA-seq data
2 versions
Latest release: about 2 years ago
7 downloads last month
Papers Mentioning MICA 60
10.3390/insects12020090
Pine Looper Bupalus piniaria (L.) Outbreaks Reconstruction: A Case Study for Southern SiberiaCited by: 2
Author(s): Denis A. Demidko, О. В. Трефилова, Sergey Kulakov, Pavel V. Mikhaylov
Software Mentions: 5
Published: over 3 years ago
10.1186/s13040-017-0149-1
Genetically improved BarraCUDACited by: 7
Author(s): William B. Langdon, Brian Y.H. Lam
Software Mentions: 4
Published: about 7 years ago
10.1371/journal.pgen.1002984
The Paramecium Germline Genome Provides a Niche for Intragenic Parasitic DNA: Evolutionary Dynamics of Internal Eliminated SequencesCited by: 142
Author(s): Olivier Arnaiz, Nathalie Mathy, Céline Baudry, Sophie Malinsky, Jean‐Marc Aury, Cyril Denby Wilkes, Olivier Garnier, Karine Labadie, Benjamin E. Lauderdale, Anne Le Mouël, Antoine Marmignon, Mariusz Nowacki, Julie Poulain, M Prajer, Patrick Wincker, Éric Meyer, Sandra Duharcourt, Laurent Duret, Mireille Bétermier, Linda Sperling
Software Mentions: 4
Published: almost 12 years ago
10.1371/journal.pone.0155461
SparkBWA: Speeding Up the Alignment of High-Throughput DNA Sequencing DataCited by: 69
Author(s): José Manuel Abuín, Juan C. Pichel, Tomás F. Pena, Jorge Amigo
Software Mentions: 4
Published: over 8 years ago
10.3389/fgene.2018.00587
RDAD: A Machine Learning System to Support Phenotype-Based Rare Disease DiagnosisCited by: 27
Author(s): Jinmeng Jia, Ruiyuan Wang, Zhongxin An, Yongli Guo, Xi Ni, Tieliu Shi
Software Mentions: 3
Published: almost 6 years ago
10.1371/journal.pone.0101113
A Feature Fusion Based Forecasting Model for Financial Time SeriesCited by: 36
Author(s): Zhiqiang Guo, Huaiqing Wang, Quan Liu, Jie Yang
Software Mentions: 3
Published: about 10 years ago
10.1038/srep11148
Disrupted resting-state attentional networks in T2DM patientsCited by: 47
Author(s): Wenqing Xia, Shaohua Wang, Hengyi Rao, Andrea M. Spaeth, Pin Wang, Yue Yang, Rong Huang, Rongrong Cai, Hao Sun
Software Mentions: 3
Published: over 9 years ago
10.1186/1471-2105-16-S7-S10
MICA: A fast short-read aligner that takes full advantage of Many Integrated Core Architecture (MIC)Cited by: 14
Author(s): Ruibang Luo, Jeanno Cheung, Edward Wu, Heng Wang, S. C. Chan, Wai-Chun Law, Guangzhu He, Chang Yu, Chi-Man Liu, Dazong Zhou, Yingrui Li, Ruiqiang Li, Jun Wang, Xinhua Zhu, Shaoliang Peng, Tak Wah Lam
Software Mentions: 3
Published: over 9 years ago
10.3390/mi10050346
The Matrix KV Storage System Based on NVM DevicesCited by: 3
Author(s): Tao Cai, Fuli Chen, Qing He, Dejiao Niu, Jie Wang
Software Mentions: 3
Published: over 5 years ago
10.1016/j.csbj.2017.01.009
The effects of shared information on semantic calculations in the gene ontologyCited by: 3
Author(s): Paul W. Bible, Hongwei Sun, María I. Morasso, Rasiah Loganantharaj, Lai Wei
Software Mentions: 3
Published: over 7 years ago
10.1371/journal.pone.0210924
How conspicuous are peacock eyespots and other colorful feathers in the eyes of mammalian predators?Cited by: 8
Author(s): Suzanne Amador Kane, Yuchao Wang, Rui Fang, Yabin Lu, Roslyn Dakin
Software Mentions: 3
Published: over 5 years ago
10.1186/1471-2180-12-140
Diversity and dynamics of Archaea in an activated sludge wastewater treatment plantCited by: 41
Author(s): Nils Johan Fredriksson, Malte Hermansson, Britt‐Marie Wilén
Software Mentions: 2
Published: over 12 years ago
10.1186/s12888-016-1047-7
Association between abnormal default mode network activity and suicidality in depressed adolescentsCited by: 125
Author(s): Shuang Zhang, Jianmei Chen, Li Kuang, Jian Cao, Han Zhang, Ming Ai, Wo Wang, Shudong Zhang, Suya Wang, Shijing Liu, Weidong Fang
Software Mentions: 2
Published: almost 8 years ago
10.1186/s12889-016-3371-8
Explaining large mortality differences between adjacent counties: a cross-sectional studyCited by: 0
Author(s): Mario Schootman, Lung-Chang Chien, Yun Shi, Sandi L. Pruitt
Software Mentions: 2
Published: about 8 years ago
10.3389/fgene.2013.00028
Maximal information component analysis: a novel non-linear network analysis methodCited by: 20
Author(s): Christoph Rau, N. Wisniewski, Luz D. Orozco, Brian J. Bennett, James N. Weiss, Aldons J. Lusis
Software Mentions: 2
Published: over 11 years ago
10.3390/s16122056
Minimum Interference Channel Assignment Algorithm for Multicast in a Wireless Mesh NetworkCited by: 4
Author(s): Sang‐Il Choi, Jong Hyuk Park
Software Mentions: 2
Published: almost 8 years ago
10.1186/1471-2105-15-110
On finding bicliques in bipartite graphs: a novel algorithm and its application to the integration of diverse biological data typesCited by: 127
Author(s): Yun Zhang, Charles Phillips, Gary L. Rogers, Erich J. Baker, Elissa J. Chesler, Michael A. Langston
Software Mentions: 2
Published: over 10 years ago
10.3389/fpls.2021.617761
Geographic Mosaics of Fly Pollinators With Divergent Color Preferences Drive Landscape-Scale Structuring of Flower Color in Daisy CommunitiesCited by: 11
Author(s): Allan G. Ellis, Bruce Anderson, Jurene E. Kemp
Software Mentions: 2
Published: over 3 years ago
10.3389/fmicb.2015.00230
Spatial variability of microbial assemblages associated with a dominant habitat-forming seaweedCited by: 59
Author(s): Alexandra H. Campbell, Ezequiel M. Marzinelli, Jonathan Gelber, Peter D. Steinberg
Software Mentions: 2
Published: over 9 years ago
10.1186/2041-1480-2-5
Disjunctive shared information between ontology concepts: application to Gene OntologyCited by: 60
Author(s): Francisco M. Couto, Mário J. Silva
Software Mentions: 2
Published: over 13 years ago
10.1155/2015/824710
Exploring Dynamic Brain Functional Networks Using Continuous “State-Related” Functional MRICited by: 7
Author(s): Xun Li, Yu‐Feng Zang, Han Zhang
Software Mentions: 2
Published: over 9 years ago
10.3390/s18113648
Non-Adaptive Methods for Fetal ECG Signal Processing: A Review and AppraisalCited by: 52
Author(s): René Jaroš, Radek Martínek, Radana Kahánková
Software Mentions: 2
Published: almost 6 years ago
10.3389/fnhum.2018.00279
Effects of the 2-Repeat Allele of the DRD4 Gene on Neural Networks Associated With the Prefrontal Cortex in Children With ADHDCited by: 9
Author(s): Andan Qian, Jiejie Tao, Xin Wang, Huiru Liu, Ling-Xiao Ji, Chuang Yang, Qiong Ye, Chengchun Chen, Jiance Li, Jingliang Cheng, Meihao Wang, Ke Zhao
Software Mentions: 2
Published: about 6 years ago
10.3389/fnagi.2021.674288
Right Frontoinsular Cortex: A Potential Imaging Biomarker to Evaluate T2DM-Induced Cognitive ImpairmentCited by: 7
Author(s): Dongsheng Zhang, Yumeng Lei, Jie Gao, Fei Qi, Xuejiao Yan, Kai Ai, Xia Zhe, Miaoting Cheng, Man Wang, Shikai Yu, Min Tang, Xiaoling Zhang
Software Mentions: 1
Published: over 3 years ago
10.3389/fimmu.2021.645528
Major Histocompatibility Complex Class I-Related Chain A (MICA) Allelic Variants Associate With Susceptibility and Prognosis of Gastric CancerCited by: 8
Author(s): Karen Toledo-Stuardo, Carolina Ribeiro, Andrea Canals, Marcela Morales, Valentina Gárate, José Alejandro Rodríguez-Siza, Samantha Tello, Marco Bustamante, Ricardo Armisén, Douglas J. Matthies, Gerald Zapata‐Torres, Patricio González‐Hormazábal, Marı́a Molina
Software Mentions: 1
Published: over 3 years ago
10.1093/jxb/eru483
Abscission of flowers and floral organs is closely associated with alkalization of the cytosol in abscission zone cellsCited by: 33
Author(s): Srivignesh Sundaresan, Sonia Philosoph‐Hadas, Joseph Riov, Eduard Belausov, Betina Kochanek, Mark L. Tucker, Shimon Meir
Software Mentions: 1
Published: almost 10 years ago
10.1186/s12931-018-0888-7
Imaging-based clusters in current smokers of the COPD cohort associate with clinical characteristics: the SubPopulations and Intermediate Outcome Measures in COPD Study (SPIROMICS)Cited by: 18
Author(s): Babak Haghighi, Seock Hwan Choi, Jiwoong Choi, Eric A. Hoffman, Alejandro P. Comellas, John D. Newell, R. Graham Barr, Eugene R. Bleecker, Christopher B. Cooper, David J. Couper, Mei Lan K. Han, Nadia N. Hansel, Richard E. Kanner, Ella A. Kazerooni, Eric Kleerup, Fernando J. Martínez, Wanda K. O’Neal, Stephen I. Rennard, Prescott G. Woodruff, Ching Long Lin
Software Mentions: 1
Published: almost 6 years ago
10.1038/srep26756
Variation of outdoor illumination as a function of solar elevation and light pollutionCited by: 118
Author(s): Manuel Spitschan, Geoffrey K. Aguirre, David H. Brainard, Alison Sweeney
Software Mentions: 1
Published: over 8 years ago
10.1038/s41598-017-14248-5
An automated method for identifying an independent component analysis-based language-related resting-state network in brain tumor subjects for surgical planningCited by: 37
Author(s): Junfeng Lu, Han Zhang, Nazia Hameed, Jie Zhang, Shuguang Yuan, Tianming Qiu, Dinggang Shen, Jinsong Wu
Software Mentions: 1
Published: almost 7 years ago
10.1038/s41598-017-18453-0
Tumor Tissue Detection using Blood-Oxygen-Level-Dependent Functional MRI based on Independent Component AnalysisCited by: 24
Author(s): Huiyuan Huang, Junfeng Lu, Jinsong Wu, Zhongxiang Ding, Shuda Chen, Lisha Duan, Jianling Cui, Fuyong Chen, Dezhi Kang, Le Qi, Wusi Qiu, Seong Whan Lee, Shi Jun Qiu, Dinggang Shen, Yu Zang, Han Zhang
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-020-79838-2
Design of fractional evolutionary processing for reactive power planning with FACTS devicesCited by: 22
Author(s): Muhammad Yasir, Rizwan Akhtar, R. D. Khan, Farman Ullah, Muhammad Asif Zahoor Raja, J. A. Tenreiro Machado
Software Mentions: 1
Published: over 3 years ago
10.3390/s18051485
Development of a Wireless Unified-Maintenance System for the Structural Health Monitoring of Civil StructuresCited by: 7
Author(s): Gwanghee Heo, Byung-Jik Son, Chunggil Kim, Seoyoung Jeon, Joonryong Jeon
Software Mentions: 1
Published: over 6 years ago
10.1186/1745-6215-13-101
Motivational Interviewing with computer assistance as an intervention to empower women to make contraceptive choices while incarcerated: study protocol for randomized controlled trialCited by: 7
Author(s): Jennifer G. Clarke, Melanie A. Gold, Rachel E. Simon, Mary B. Roberts, L. A. R. Stein
Software Mentions: 1
Published: about 12 years ago
10.3390/ijerph16234655
Changes in Attitudes toward Mental Illness in Healthcare Professionals and StudentsCited by: 24
Author(s): Yin Yi Lien, Hui Shin Lin, Chi Hsuan Tsai, Ting Wu
Software Mentions: 1
Published: almost 5 years ago
10.3390/ijerph18094425
The Assessment of Attitudes of Students at Medical Schools towards Psychiatry and Psychiatric Patients—A Cross-Sectional Online SurveyCited by: 6
Author(s): Mateusz Babicki, Krzysztof E. Kowalski, Bogna Bogudzińska, Patryk Piotrowski
Software Mentions: 1
Published: over 3 years ago
10.1098/rsob.110036
Interleukin-2 signalling is modulated by a labile disulfide bond in the CD132 chain of its receptorCited by: 34
Author(s): Clive Metcalfe, Peter Cresswell, A. Neil Barclay
Software Mentions: 1
Published: over 12 years ago
10.4102/phcfm.v11i1.1902
Accessible continued professional development for maternal mental healthCited by: 5
Author(s): Sally Field, Zulfa Abrahams, David Woods, Roseanne E. Turner, Michael Nnachebe Onah, Doreen Kaura, Simone Honikman
Software Mentions: 1
Published: over 5 years ago
10.1186/s13023-020-01374-z
Diagnosis support systems for rare diseases: a scoping reviewCited by: 39
Author(s): Carole Faviez, Xiaoyi Chen, Nicolas Garcelon, Antoine Neuraz, Bertrand Knebelmann, R. Salomon, Stanislas Lyonnet, Sophie Saunier, Anita Burgun
Software Mentions: 1
Published: over 4 years ago
10.1186/1471-2105-12-S1-S7
Multi-resolution independent component analysis for high-performance tumor classification and biomarker discoveryCited by: 26
Author(s): Henry Han, Xiaoli Li
Software Mentions: 1
Published: over 13 years ago
10.1186/1471-2105-7-427
MICA: desktop software for comprehensive searching of DNA databasesCited by: 5
Author(s): William Stokes, Benjamin S. Glick
Software Mentions: 1
Published: almost 18 years ago
10.1186/1472-6785-11-11
Simrank: Rapid and sensitive general-purpose k-mer search toolCited by: 24
Author(s): Todd Z. DeSantis, Kenneth H. Keller, Ulaş Karaöz, Alexander V. Alekseyenko, Navjeet Singh, Eoin L. Brodie, Zhiheng Pei, Gary L. Andersen, Niels Larsen
Software Mentions: 1
Published: over 13 years ago
10.1186/1471-227X-9-23
A cross-sectional study of Victorian mobile intensive care ambulance paramedics knowledge of the Valsalva manoeuvreCited by: 5
Author(s): Gavin Smith, Malcolm Boyle
Software Mentions: 1
Published: almost 15 years ago
10.1186/s12909-021-02695-8
A multicentric study on stigma towards people with mental illness in health sciences studentsCited by: 38
Author(s): Ana I. Masedo, Pamela Grandón, Sandra Saldivia, Alexis Vielma-Aguilera, Elvis Siprian Castro-Alzate, Claudio Bustos, Cristina Romero-López-Alberca, J.M. Pena-Andreu, Miguel Xavier, Berta Moreno‐Küstner
Software Mentions: 1
Published: over 3 years ago
10.1186/1471-2458-11-344
Mechanistic Indicators of Childhood Asthma (MICA) Study: piloting an integrative design for evaluating environmental healthCited by: 11
Author(s): Jane Gallagher, Edward Hudgens, Amy Williams, Jefferson Inmon, Scott Rhoney, Gina Andrews, David M. Reif, Brooke L Heidenfelder, Lucas M. Neas, Williams Rt, Markey Johnson, Halûk Özkaynak, Stephen W. Edwards, Elaine Cohen Hubal
Software Mentions: 1
Published: over 13 years ago
10.1186/1752-0509-5-S2-S5
A high performance profile-biomarker diagnosis for mass spectral profilesCited by: 4
Author(s): Henry Han
Software Mentions: 1
Published: over 13 years ago
10.3390/bios11020038
Space Biology Research and Biosensor Technologies: Past, Present, and FutureCited by: 12
Author(s): Ada Kanapskyte, Elizabeth Hawkins, Lauren Liddell, Shilpa R. Bhardwaj, Diana Gentry, Sergio R. Santa Maria
Software Mentions: 1
Published: over 3 years ago
10.1080/13102818.2014.959711
Towards computational improvement of DNA database indexing and short DNA query searchingCited by: 1
Author(s): Done Stojanov, Sašo Koceski, Aleksandra Mileva, Nataša Koceska, Cveta Martinovska Bande
Software Mentions: 1
Published: about 10 years ago
10.1093/brain/awx309
Altered caudate connectivity is associated with executive dysfunction after traumatic brain injuryCited by: 44
Author(s): Sara De Simoni, Peter O Jenkins, Niall Bourke, Jessica Fleminger, Peter J. Hellyer, Amy Jolly, Maneesh C. Patel, James R. Cole, Robert Leech, David J. Sharp
Software Mentions: 1
Published: almost 7 years ago
10.1007/s00103-021-03386-x
COVID-19-Forschungsdaten leichter zugänglich machen – Aufbau einer bundesweiten InformationsinfrastrukturCited by: 4
Author(s): Carsten Oliver Schmidt, Juliane Fluck, Martin Golebiewski, Linus Grabenhenrich, Horst K. Hahn, Toralf Kirsten, Sebastian Klammt, Matthias Löbe, Ulrich Sax, Sylvia Thun, Iris Pigeot, Wolfgang Ahrens, Johannes Darms, Jörg Henke, Xiaoming Hu, Sophie Anne Inès Klopfenstein, Lisa Langnickel, Bianca Lassen-Schmidt, Hermann Pohlabeln, Michael Lieser, Anatol-Fiete Näher, Markus Scholz, Carina Nina Vorisek, Dagmar Waltemath, Hannes Wünsche
Software Mentions: 1
Published: about 3 years ago
10.3390/ma14081826
The Critical Raw Materials Issue between Scarcity, Supply Risk, and Unique PropertiesCited by: 19
Author(s): Mihaela Gîrtan, Antje Wittenberg, Maria Luisa Grilli, Daniel P. S. de Oliveira, Chiara Giosué, Maria Letizia Ruello
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pone.0050268
BICAR: A New Algorithm for Multiresolution Spatiotemporal Data FusionCited by: 5
Author(s): Kevin Brown, Scott T. Grafton, Jean M. Carlson
Software Mentions: 1
Published: almost 12 years ago
10.1371/journal.pone.0046802
Methylobacterium-Induced Endophyte Community Changes Correspond with Protection of Plants against Pathogen AttackCited by: 107
Author(s): Pavlo Ardanov, Angela Sessitsch, Hely Häggman, Natalia Kozyrovska, Anna Maria Pirttilä
Software Mentions: 1
Published: almost 12 years ago
10.1371/journal.pone.0051458
The ADNP Derived Peptide, NAP Modulates the Tubulin Pool: Implication for Neurotrophic and Neuroprotective ActivitiesCited by: 74
Author(s): Saar Oz, Yanina Ivashko-Pachima, Illana Gozes
Software Mentions: 1
Published: almost 12 years ago
10.1371/journal.pone.0033346
Genomic Targets of Brachyury (T) in Differentiating Mouse Embryonic Stem CellsCited by: 58
Author(s): Amanda Evans, Tiago Faial, Michael J. Gilchrist, Thomas A. Down, Ludovic Vallier, Roger A. Pedersen, Fiona C. Wardle, James C. Smith
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0157850
Mimp/Mtch2, an Obesity Susceptibility Gene, Induces Alteration of Fatty Acid Metabolism in Transgenic MiceCited by: 10
Author(s): Yamit Bar-Lev, Sharon Moshitch-Moshkovitz, Galia Tsarfaty, Dafna Kaufman, Judith Horev, James H. Resau, Ilan Tsarfaty
Software Mentions: 1
Published: about 8 years ago
10.1371/journal.pone.0045969
Met Kinetic Signature Derived from the Response to HGF/SF in a Cellular Model Predicts Breast Cancer Patient SurvivalCited by: 5
Author(s): Gideon Y. Stein, Nir Yosef, Hadar Reichman, Judith Horev, Adi Laser-Azogui, Angelique Berens, James H. Resau, Eytan Ruppin, Roded Sharan, Ilan Tsarfaty
Software Mentions: 1
Published: almost 12 years ago
10.3390/cancers11010050
Dynamic Thromboembolic Risk Modelling to Target Appropriate Preventative Strategies for Patients with Non-Small Cell Lung CancerCited by: 27
Author(s): Marliese Alexander, David Ball, Benjamin Solomon, Michael MacManus, Renée Manser, Bernhard Riedel, David Westerman, Sue Evans, Rory Wolfe, Kate Burbury
Software Mentions: 1
Published: over 5 years ago
10.1155/2016/9754813
PWC-ICA: A Method for Stationary Ordered Blind Source Separation with Application to EEGCited by: 8
Author(s): Kenneth R. Ball, Nima Bigdely-Shamlo, Tim Mullen, Kay A. Robbins
Software Mentions: 1
Published: over 8 years ago
10.1002/ece3.6969
Ultraviolet components offer minimal contrast enhancement to an aposematic signalCited by: 6
Author(s): Justin Yeager, James B. Barnett
Software Mentions: 1
Published: almost 4 years ago
10.1002/ece3.5995
Background matching, disruptive coloration, and differential use of microhabitats in two neotropical grasshoppers with sexual dichromatismCited by: 8
Author(s): Víctor Hugo Ramírez‐Delgado, Raúl Cueva del Castillo
Software Mentions: 1
Published: over 4 years ago