Ecosyste.ms: Papers

10.3389/fgene.2021.666771

scGPS: Determining Cell States and Global Fate Potential of Subpopulations
Cited by: 1
Author(s): Michael Thompson, Maika Matsumoto, Tianqi Ma, Anne Senabouth, Nathan J. Palpant, Joseph E. Powell, Quan Nguyen
Software Mentions: 5
Published: over 3 years ago

10.1186/s12859-017-1820-8

An effective approach to detecting both small and large complexes from protein-protein interaction networks
Cited by: 18
Author(s): Bin Xu, Yan Wang, Zewei Wang, Jiaogen Zhou, Shuigeng Zhou, Jihong Guan
Software Mentions: 4
Published: about 7 years ago

10.1186/s40168-020-00986-8

Acquisition of oral microbiota is driven by environment, not host genetics
Cited by: 31
Author(s): Chiranjit Mukherjee, Christina O. Moyer, Heidi M. Steinkamp, Shahr B. Hashmi, Clifford J. Beall, Xiaohan Guo, Ai Ni, Eugene J. Leys, Ann L. Griffen
Software Mentions: 4
Published: over 3 years ago

10.1186/s12859-016-1191-6

Protein complex prediction for large protein protein interaction networks with the Core&Peel method
Cited by: 35
Author(s): Marco Pellegrini, Miriam Baglioni, Filippo Geraci
Software Mentions: 4
Published: about 8 years ago

10.1155/2019/3726721

Identifying Protein Complexes from Dynamic Temporal Interval Protein-Protein Interaction Networks
Cited by: 1
Author(s): Jinxiong Zhang, Cheng Zhong, Hai Lin, Mian Wang
Software Mentions: 4
Published: about 5 years ago

10.1093/database/baw145

Text mining resources for the life sciences
Cited by: 34
Author(s): Piotr Przybyła, Matthew Shardlow, Sophie Aubin, Robert Bossy, Richard Eckart de Castilho, Stelios Piperidis, John McNaught, Sophia Ananiadou
Software Mentions: 4
Published: almost 9 years ago

10.1186/s12859-018-2309-9

Predicting overlapping protein complexes based on core-attachment and a local modularity structure
Cited by: 23
Author(s): Rongquan Wang, Caixia Wang, Lingtao Su, Liankun Sun
Software Mentions: 4
Published: about 6 years ago

10.1186/s12859-018-2555-x

Protein complexes identification based on go attributed network embedding
Cited by: 21
Author(s): Bo Xu, Kun Li, Wei Zheng, Xiaoxia Liu, Yijia Zhang, Zhehuan Zhao, Zengyou He
Software Mentions: 4
Published: almost 6 years ago

10.1186/1471-2164-14-S5-S15

PLW: Probabilistic Local Walks for detecting protein complexes from protein interaction networks
Cited by: 11
Author(s): Daniel Lin-Kit Wong, Xiaoli Li, Min Wu, Jie Zheng, See-Kiong Ng
Software Mentions: 3
Published: almost 12 years ago

10.3390/molecules22071223

Neighbor Affinity-Based Core-Attachment Method to Detect Protein Complexes in Dynamic PPI Networks
Cited by: 7
Author(s): Xiujuan Lei, Jing Liang
Software Mentions: 3
Published: over 7 years ago

10.1186/1477-5956-10-S1-S18

Filtering Gene Ontology semantic similarity for identifying protein complexes in large protein interaction networks
Cited by: 17
Author(s): Jian Wang, Dong Xie, Hongfei Lin, Zhihao Yang, Yijia Zhang
Software Mentions: 3
Published: almost 13 years ago

10.1186/1471-2164-11-S1-S3

Computational approaches for detecting protein complexes from protein interaction networks: a survey
Cited by: 281
Author(s): Xiaoli Li, Min Wu, Chee-Keong Kwoh, See-Kiong Ng
Software Mentions: 3
Published: almost 15 years ago

10.1186/s12859-019-2649-0

Protein complex detection based on flower pollination mechanism in multi-relation reconstructed dynamic protein networks
Cited by: 8
Author(s): Xiujuan Lei, Ming Fang, Ling Guo, Fang‐Xiang Wu
Software Mentions: 2
Published: over 5 years ago

10.2196/jmir.6793

Navigating Ethics in the Digital Age: Introducing Connected and Open Research Ethics (CORE), a Tool for Researchers and Institutional Review Boards
Cited by: 58
Author(s): John Torous, Camille Nebeker
Software Mentions: 2
Published: over 7 years ago

10.3390/s20216153

Privacy-Preserving Distributed Analytics in Fog-Enabled IoT Systems
Cited by: 4
Author(s): Liang Zhao
Software Mentions: 2
Published: about 4 years ago

10.1186/1471-2105-11-504

MCL-CAw: a refinement of MCL for detecting yeast complexes from weighted PPI networks by incorporating core-attachment structure
Cited by: 62
Author(s): Sriganesh Srihari, Kang Ning, Hon Wai Leong
Software Mentions: 2
Published: about 14 years ago

10.3390/s21103361

L2-CalSat: A Calibration Satellite for Ultra-Sensitive CMB Polarization Space Missions
Cited by: 12
Author(s): F. J. Casas, E. Martínez-González, Juan Bermejo-Ballesteros, Sergio Sánchez-García, Javier Cubas, P. Vielva, R. B. Barreiro, A. Sanz
Software Mentions: 2
Published: over 3 years ago

10.2196/13544

Using Facebook for Qualitative Research: A Brief Primer
Cited by: 70
Author(s): Daschel Franz, Heather E. Marsh, Jason I. Chen, Alan R. Teo
Software Mentions: 2
Published: about 5 years ago

10.1186/s12875-020-01197-8

General practitioner strategies for managing patients with multimorbidity: a systematic review and thematic synthesis of qualitative research
Cited by: 48
Author(s): Raechel Damarell, Deidre Morgan, Jennifer Tieman
Software Mentions: 2
Published: over 4 years ago

10.1186/s12918-017-0504-3

CPredictor3.0: detecting protein complexes from PPI networks with expression data and functional annotations
Cited by: 13
Author(s): Ying Xu, Jiaogen Zhou, Shuigeng Zhou, Jihong Guan
Software Mentions: 2
Published: almost 7 years ago

10.1186/1471-2105-9-495

CORE_TF: a user-friendly interface to identify evolutionary conserved transcription factor binding sites in sets of co-regulated genes
Cited by: 34
Author(s): Matthew S. Hestand, M.A. van Galen, Michel P. Villerius, Gert‐Jan B. van Ommen, Johan T. den Dunnen, Peter A C ‘t Hoen
Software Mentions: 2
Published: almost 16 years ago

10.3390/cancers10120497

Developments in Stereotactic Body Radiotherapy
Cited by: 14
Author(s): A. Haridass
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12859-019-3256-9

Detecting overlapping protein complexes in weighted PPI network based on overlay network chain in quotient space
Cited by: 6
Author(s): Jie Zhao, Xiujuan Lei
Software Mentions: 2
Published: almost 5 years ago

10.3390/s17020332

A Web of Things-Based Emerging Sensor Network Architecture for Smart Control Systems
Cited by: 35
Author(s): Murad Khan, Bhagya Nathali Silva, Kijun Han
Software Mentions: 2
Published: over 7 years ago

10.1186/s13005-021-00276-0

Compliance with the ISO 27020:2019 norm of a sample of currently available preadjusted Orthodontic bracket systems. Are the actual dimensions as expected?
Cited by: 4
Author(s): Laura Bernés Martínez, Daniele Garcovich, Pilar España Pamplona, Milagros Adobes Martín, Alfonso Alvarado-Lorenzo
Software Mentions: 1
Published: over 3 years ago

10.3390/jcm9061810

Oncology and Cardiac Rehabilitation: An Underrated Relationship
Cited by: 18
Author(s): Elio Venturini, Gabriella Iannuzzo, Antonello D’Andrea, Mario Pacileo, Luigi Tarantini, Maria Laura Canale, Marco Gentile, Giuseppe Vitale, Filippo M. Sarullo, Rossella Vastarella, Anna Di Lorenzo, Crescenzo Testa, Alessandro Parlato, Carlo Vigorito, Francesco Giallauria
Software Mentions: 1
Published: over 4 years ago

10.1186/s41073-016-0009-4

Developing the Clarity and Openness in Reporting: E3-based (CORE) Reference user manual for creation of clinical study reports in the era of clinical trial transparency
Cited by: 5
Author(s): Samina Hamilton, Aaron B. Bernstein, Graham Blakey, Vivien Fagan, Tracy Farrow, Debbie Jordan, Walther Seiler, Anna Shannon, Art Gertel
Software Mentions: 1
Published: over 8 years ago

10.1186/s41073-019-0075-5

Critical review of the TransCelerate Template for clinical study reports (CSRs) and publication of Version 2 of the CORE Reference (Clarity and Openness in Reporting: E3-based) Terminology Table
Cited by: 0
Author(s): Samina Hamilton, Aaron B. Bernstein, Graham Blakey, Vivien Fagan, Tracy Farrow, Debbie Jordan, Walther Seiler, Art Gertel
Software Mentions: 1
Published: over 5 years ago

10.1038/srep43597

Analysis of Co-Associated Transcription Factors via Ordered Adjacency Differences on Motif Distribution
Cited by: 14
Author(s): Gaofeng Pan, Jijun Tang, Fei Guo
Software Mentions: 1
Published: over 7 years ago

10.1155/2014/523634

Protein-Protein Interactions Prediction Based on Iterative Clique Extension with Gene Ontology Filtering
Cited by: 8
Author(s): Lei Yang, Xianglong Tang
Software Mentions: 1
Published: almost 11 years ago

10.3390/s18020425

Game Theory-Based Cooperation for Underwater Acoustic Sensor Networks: Taxonomy, Review, Research Challenges and Directions
Cited by: 31
Author(s): Dalhatu Muhammed, Mohammad Hossein Anisi, Mahdi Zareei, César Vargas-Rosales, Abdul Hakim Khan
Software Mentions: 1
Published: almost 7 years ago

10.3390/s18030856

3VSR: Three Valued Secure Routing for Vehicular Ad Hoc Networks using Sensing Logic in Adversarial Environment
Cited by: 12
Author(s): Muhammad Sohail, Liangmin Wang
Software Mentions: 1
Published: over 6 years ago

10.3390/s21020504

Enhanced Routing Algorithm Based on Reinforcement Machine Learning—A Case of VoIP Service
Cited by: 9
Author(s): Davi Ribeiro Militani, Hermes Pimenta de Moraes, Renata Lopes Rosa, Lunchakorn Wuttisittikulkij, Miguel Arjona Ramírez, Demóstenes Zegarra Rodríguez
Software Mentions: 1
Published: almost 4 years ago

10.1186/s13063-017-1878-7

Advancing engagement methods for trials: the CORE study relational model of engagement for a stepped wedge cluster randomised controlled trial of experience-based co-design for people living with severe mental illnesses
Cited by: 20
Author(s): Lauralie Richard, Donella Piper, Wayne Weavell, Rosemary Callander, Rick Iedema, John Furler, David Pierce, Kali Godbee, Jane Gunn, Victoria Palmer
Software Mentions: 1
Published: over 7 years ago

10.1111/inm.12681

Comparison of a co‐produced mental health service to traditional services: A co‐produced mixed‐methods cross‐sectional study
Cited by: 10
Author(s): Raffaella Pocobello, Tarek Josef el Sehity, Luca Negrogno, Carlo Minervini, Maddalena Guida, Cosimo Venerito
Software Mentions: 1
Published: almost 5 years ago

10.5195/jmla.2020.856

The impact of institutional repositories: a systematic review
Cited by: 9
Author(s): Michelle Demetres, Diana Delgado, Drew Wright
Software Mentions: 1
Published: over 4 years ago

10.3390/ijms18091910

Protein Complexes Prediction Method Based on Core—Attachment Structure and Functional Annotations
Cited by: 10
Author(s): Bo Li, Bo Liao
Software Mentions: 1
Published: about 7 years ago

10.1186/s12941-016-0130-8

Real-world daptomycin use across wide geographical regions: results from a pooled analysis of CORE and EU-CORE
Cited by: 36
Author(s): R.A. Seaton, Armando González-Ruiz, Kerry O. Cleveland, Kimberly A Couch, Rashidkhan Pathan, Kamal Hamed
Software Mentions: 1
Published: over 8 years ago

10.35844/001c.13314

CORE: Compassion Oriented Reflection and Engagement to Guide Academic-Community Partnership
Cited by: 3
Author(s): Tommy Chou, Stacy L. Frazier
Software Mentions: 1
Published: over 4 years ago

10.1186/1471-2261-10-43

Local erythropoietin and endothelial progenitor cells improve regional cardiac function in acute myocardial infarction
Cited by: 10
Author(s): Andreas Stein, Martina Knödler, Moritz Makowski, Sandra Kühnel, SG Nekolla, Alexandra Keithahn, Eliane Weidl, Philipp Groha, Maren Schürmann, Atti Saraste, René M. Botnar, Robert A.J. Oostendorp, Ilka Ott
Software Mentions: 1
Published: about 14 years ago

10.1186/1472-6963-14-459

Provider cost analysis supports results-based contracting out of maternal and newborn health services: an evidence-based policy perspective
Cited by: 7
Author(s): Peter Hatcher, Shiraz Shaikh, Hassan Fazli, Shehla Zaidi, Atif Riaz
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12879-021-05777-6

Polymorphism rs368234815 of interferon lambda 4 gene and spontaneous clearance of hepatitis C virus in haemodialysis patients: a case-control study
Cited by: 1
Author(s): Alicja E. Grzegorzewska, Adrianna Mostowska, Monika Świderska, Wojciech Marcinkowski, Ireneusz Stolarek, Marek Figlerowicz, Paweł P. Jagodzińśki
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12888-020-02536-w

Efficacy of a self-applied online program to promote resilience and coping skills in university students in four Spanish-speaking countries: study protocol for a randomized controlled trial
Cited by: 8
Author(s): Araceli Palma-Gómez, Rocío Herrero, Rosa Baños, Azucena García‐Palacios, Claudia Elena Castañeiras, Gabriela Lidia Fernández, Darío Martín Llull, Lorena Cudris–Torres, Libia Alvis Barranco, Leonardo Cárdenas-Gómez, Cristina Botella
Software Mentions: 1
Published: over 4 years ago

10.1186/s40359-018-0260-1

Factor analysis of the Clinical Outcomes in Routine Evaluation – Outcome Measures (CORE-OM) in a Kenyan sample
Cited by: 6
Author(s): Fredrik Falkenström, Manasi Kumar, Aiysha Zahid, Mary Wangari Kuria, Caleb Othieno
Software Mentions: 1
Published: about 6 years ago

10.1186/s12889-015-1538-3

Replication of a whole school ethos-changing intervention: different context, similar effects, additional insights
Cited by: 12
Author(s): Penelope Hawe, Lyndal Bond, Laura Ghali, Rosemary Perry, Colleen Davison, David M. Casey, Helen Butler, Cynthia Webster, Bert Scholz
Software Mentions: 1
Published: over 9 years ago

10.1136/bmjgh-2020-004917

Five questions to consider when conducting COVID-19 phone research
Cited by: 2
Author(s): Shreya Menon, Petra Sonderegger, Swetha Totapally
Software Mentions: 1
Published: over 3 years ago

10.1042/BSR20160179

Computational approaches for <i>de novo</i> design and redesign of metal-binding sites on proteins
Cited by: 31
Author(s): Günseli Bayram Akçapınar, Uğur Sezerman
Software Mentions: 1
Published: over 7 years ago

10.11604/pamj.2020.37.293.26017

Estimating healthcare resource needs for COVID-19 patients in Nigeria
Cited by: 3
Author(s): Adeteju Ogunbameru, Kali Barrett, A.E. Joda, Yasín A. Khan, Petros Pechlivanoglou, Stephen Mac, David Naimark, Raphael Ximenes, Beate Sander
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0233658

Five members of a mixed-sex group of bottlenose dolphins share a stereotyped whistle contour in addition to maintaining their individually distinctive signature whistles
Cited by: 10
Author(s): Brittany L. Jones, Risa Daniels, Samantha Tufano, Sam H. Ridgway
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0019051

CORE: A Phylogenetically-Curated 16S rDNA Database of the Core Oral Microbiome
Cited by: 150
Author(s): Ann L. Griffen, Clifford J. Beall, Noah D. Firestone, Erin L. Gross, James Michael DiFranco, Jori Hardman, Bastienne Vriesendorp, Russell A. Faust, Daniel Janies, Eugene J. Leys
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0156393

Long-Term Effectiveness and Cost-Effectiveness of Metformin Combined with Liraglutide or Exenatide for Type 2 Diabetes Mellitus Based on the CORE Diabetes Model Study
Cited by: 5
Author(s): Xuesong Zhang, Sisi Liu, Yukun Li, Yan Wang, Meimei Tian, Guoqiang Liu
Software Mentions: 1
Published: over 8 years ago

10.3390/cancers11091221

Integrin-Mediated TGFβ Activation Modulates the Tumour Microenvironment
Cited by: 57
Author(s): Nicholas F. Brown, John F. Marshall
Software Mentions: 1
Published: about 5 years ago

10.1186/s12998-019-0286-3

Professional barriers and facilitators to using stratified care approaches for managing non-specific low back pain: a qualitative study with Canadian physiotherapists and chiropractors
Cited by: 12
Author(s): Fadi Al Zoubi, Simon French, Andrea M. Patey, Nancy E. Mayo, André Bussières
Software Mentions: 1
Published: almost 5 years ago

10.1002/ejp.1485

A systematic review on the effects of group singing on persistent pain in people with long‐term health conditions
Cited by: 11
Author(s): John Irons, David Sheffield, Freddie Ballington, Donald Edwin Stewart
Software Mentions: 1
Published: about 5 years ago

10.3390/foods10092013

A Review of Chemical Contaminants in Marine and Fresh Water Fish in Nigeria
Cited by: 6
Author(s): A. Uzomah, Anne‐Katrine Lundebye, Marian Kjellevold, Fubara A Chuku, Oluwafemi A Stephen
Software Mentions: 1
Published: about 3 years ago

10.3390/foods8050144

An Integrated Approach to Current Trends in Organic Food in the EU
Cited by: 19
Author(s): Ionel Bostan, Mihaela Onofrei, Anca Florentina Vatamanu, Carmen Toderașcu, Cristina Lazăr
Software Mentions: 1
Published: over 5 years ago

10.3389/frai.2021.643770

Characterising Online News Comments: A Multi-Dimensional Cruise Through Online Registers
Cited by: 0
Author(s): Katharina Ehret, Maïté Taboada
Software Mentions: 1
Published: over 3 years ago

10.3389/fcvm.2021.660698

Myocardial Ischemia-Reperfusion and Diabetes: Lessons Learned From Bedside to Bench
Cited by: 4
Author(s): Maya Dia, Alexandre Paccalet, Bruno Pillot, Christelle Léon, Michel Ovize, Claire Crola Da Silva, Thomas Bochaton, Mélanie Paillard
Software Mentions: 1
Published: over 3 years ago

10.3389/fncir.2018.00089

Methods for Mapping Neuronal Activity to Synaptic Connectivity: Lessons From Larval Zebrafish
Cited by: 10
Author(s): Adrian Wanner, Ashwin Vishwanathan
Software Mentions: 1
Published: about 6 years ago

10.3389/fpsyt.2018.00781

Bone Status in Obese, Non-diabetic, Antipsychotic-Treated Patients, and Effects of the Glucagon-Like Peptide-1 Receptor Agonist Exenatide on Bone Turnover Markers and Bone Mineral Density
Cited by: 12
Author(s): Robert Eriksson, Brian Villumsen Broberg, Pelle L. Ishøy, Nikolaj Bak, Ulrik B. Andersen, Niklas Rye Jørgensen, Filip K. Knop, Bjørn H Ebdrup
Software Mentions: 1
Published: almost 6 years ago

10.3389/fpsyg.2018.01662

Studying the Efficacy of Psychodrama With the Hermeneutic Single Case Efficacy Design: Results From a Longitudinal Study
Cited by: 10
Author(s): António-José Gonzalez, Paulo Martins, Margarida Pedroso de Lima
Software Mentions: 1
Published: about 6 years ago

10.3390/genes8020081

New Evidence for the Theory of Chromosome Organization by Repetitive Elements (CORE)
Cited by: 3
Author(s): Shuang Tang
Software Mentions: 1
Published: over 7 years ago