cran: RobustRankAggreg | Projects

10.3389/fcell.2020.577125

Development of a Metastasis-Related Immune Prognostic Model of Metastatic Colorectal Cancer and Its Usefulness to Immunotherapy
Cited by: 11
Author(s): Zhiwen Luo, Xiao Chen, Yefan Zhang, Zhen Huang, Hong Zhao, Jianjun Zhao, Zhiyu Li, Jianguo Zhou, Jianmei Liu, Jianqiang Cai, Xinyu Bi
Software Mentions: 26
Published: almost 4 years ago

10.3389/fcell.2021.621618

Functional Assessment of Four Novel Immune-Related Biomarkers in the Pathogenesis of Clear Cell Renal Cell Carcinoma
Cited by: 7
Author(s): Daojun Lv, Xiangkun Wu, Ming Wang, Wenzhe Chen, Shuxin Yang, Yongda Liu, Guohua Zeng, Danan Gu
Software Mentions: 11
Published: almost 4 years ago

10.1111/jcmm.15615

Gene regulation network analysis reveals core genes associated with survival in glioblastoma multiforme
Cited by: 15
Author(s): Lan Jiang, Min Zhong, Tianbing Chen, Xiaolong Zhu, Hui Yang, Kun Lv
Software Mentions: 11
Published: over 4 years ago

10.3390/ijerph18115564

Identification of Hub Genes in Different Stages of Colorectal Cancer through an Integrated Bioinformatics Approach
Cited by: 2
Author(s): Abhijeet R. Patil, Ming-Ying Leung, Sourav Roy
Software Mentions: 8
Published: over 3 years ago

10.1186/s12906-020-02939-y

A bioinformatics investigation into the pharmacological mechanisms of javanica oil emulsion injection in non-small cell lung cancer based on network pharmacology methodologies
Cited by: 3
Author(s): Mengwei Ni, Xinkui Liu, Ziqi Meng, Shuyu Liu, Shanshan Jia, Yingying Liu, Wei Zhou, Jiarui Wu, Jingyuan Zhang, Siyu Guo, Jialin Li, Haojia Wang, Xiaomeng Zhang
Software Mentions: 8
Published: over 4 years ago

10.3389/fimmu.2021.749459

A Machine Learning Model to Predict the Triple Negative Breast Cancer Immune Subtype
Cited by: 24
Author(s): Zihao Chen, Maoli Wang, Rudy Leon De Wilde, Ruifa Feng, Mingqiang Su, Wenjie Shi
Software Mentions: 8
Published: over 3 years ago

10.18632/aging.102844

Development of a four-gene prognostic model for pancreatic cancer based on transcriptome dysregulation
Cited by: 19
Author(s): Jie Yan, Liangcai Wu, Congwei Jia, Shuangni Yu, Zhaohui Lü, Yueping Sun, Jie Chen
Software Mentions: 7
Published: almost 5 years ago

10.1371/journal.pcbi.1004575

SINCERA: A Pipeline for Single-Cell RNA-Seq Profiling Analysis
Cited by: 292
Author(s): Minzhe Guo, Hui Wang, S. Steven Potter, Jeffrey A. Whitsett, Yan Xu
Software Mentions: 7
Published: about 9 years ago

10.3389/fgene.2020.00895

Identification of Hub Genes Associated With Hepatocellular Carcinoma Using Robust Rank Aggregation Combined With Weighted Gene Co-expression Network Analysis
Cited by: 10
Author(s): Hongjiang Song, Na Ding, Shang Li, Jianlong Liao, Aimin Xie, Youtao Yu, Chunlong Zhang, Caifang Ni
Software Mentions: 7
Published: about 4 years ago

10.3389/fimmu.2021.726747

Identifying Immune Cell Infiltration and Effective Diagnostic Biomarkers in Rheumatoid Arthritis by Bioinformatics Analysis
Cited by: 45
Author(s): Sheng Zhou, Hongmei Lü, Min Xiong
Software Mentions: 6
Published: over 3 years ago

10.7717/peerj.9975

Identification of NUF2 and FAM83D as potential biomarkers in triple-negative breast cancer
Cited by: 11
Author(s): Xiuming Zhai, Zhaowei Yang, Xiji Liu, Z P Dong, Dandan Zhou
Software Mentions: 6
Published: over 4 years ago

10.7150/ijms.61309

Integrated analysis of the molecular mechanisms in idiopathic pulmonary fibrosis
Cited by: 6
Author(s): Ke Zhu, Aiqun Xu, Wanli Xia, Pulin Li, Rui Han, Enze Wang, Sijing Zhou, Ran Wang
Software Mentions: 6
Published: almost 4 years ago

10.1016/S2589-7500(21)00115-1

Anosmia, ageusia, and other COVID-19-like symptoms in association with a positive SARS-CoV-2 test, across six national digital surveillance platforms: an observational study
Cited by: 48
Author(s): Carole H. Sudre, Ayya Keshet, Mark S. Graham, Amit D. Joshi, Smadar Shilo, Hagai Rossman, Benjamin Murray, Erika Molteni, Kerstin Kläser, Liane S Canas, Michela Antonelli, Long H. Nguyen, David A. Drew, Marc Modat, Joan Capdevila Pujol, Sajaysurya Ganesh, Jonathan Wolf, Tomer Meir, Andrew T. Chan, Claire J. Steves, Tim D. Spector, John S. Brownstein, Eran Segal, Sébastien Ourselin, Christina M Astley
Software Mentions: 5
Published: over 3 years ago

10.1186/s13059-020-01960-1

Hemispheric asymmetry in the human brain and in Parkinson’s disease is linked to divergent epigenetic patterns in neurons
Cited by: 35
Author(s): Peipei Li, Elizabeth Ensink, Sean Lang, Lee Marshall, Meghan Schilthuis, Jared Lamp, Irving E. Vega, Viviane Labrie
Software Mentions: 5
Published: almost 5 years ago

10.1042/BSR20204301

Construction of a five-gene prognostic model based on immune-related genes for the prediction of survival in pancreatic cancer
Cited by: 12
Author(s): Bo Liu, Tingting Fu, Ping He, Changsheng Du, Ke Xu
Software Mentions: 5
Published: over 3 years ago

10.3390/cells8070698

Single Cell Gene Co-Expression Network Reveals FECH/CROT Signature as a Prognostic Marker
Cited by: 19
Author(s): Xin Chen, Lingling Hu, Yuan Wang, Weijun Sun, Chao Yang
Software Mentions: 5
Published: over 5 years ago

10.7717/peerj.8061

Identification of genes and functional coexpression modules closely related to ulcerative colitis by gene datasets analysis
Cited by: 7
Author(s): Jie Zhu, Zheng Wang, Fengzhe Chen, Changhong Liu
Software Mentions: 4
Published: about 5 years ago

10.1155/2020/4908427

Comprehensive Analysis of mRNA Expression Profiles in Head and Neck Cancer by Using Robust Rank Aggregation and Weighted Gene Coexpression Network Analysis
Cited by: 4
Author(s): Zijian Cao, Yin-Jie Ao, Yu Guo, Shui‐Hong Zhou
Software Mentions: 4
Published: about 4 years ago

10.1111/cns.13470

Bioinformatic analysis identifies key transcriptome signatures in temporal lobe epilepsy
Cited by: 22
Author(s): Qinglan Chen, Lu Xia, Shian Zhong, Qiang Wang, Jing Ding, Xin Wang
Software Mentions: 4
Published: about 4 years ago

10.1097/MD.0000000000023153

Identification of candidate biomarkers correlated with the pathogenesis and prognosis of breast cancer via integrated bioinformatics analysis
Cited by: 8
Author(s): Shuyu Liu, Xinkui Liu, Jiarui Wu, Wei Zhou, Mengwei Ni, Ziqi Meng, Shanshan Jia, Jingyuan Zhang, Siyu Guo, Shan Lu, Yingfei Li
Software Mentions: 4
Published: about 4 years ago

10.3390/metabo11010029

Gut Microbiota Dysbiosis Is Associated with Elevated Bile Acids in Parkinson’s Disease
Cited by: 68
Author(s): Peipei Li, Bryan A. Killinger, Elizabeth Ensink, Ian Beddows, Ali Yılmaz, Noah Lubben, Jared Lamp, Meghan Schilthuis, Irving E. Vega, Randy Woltjer, J. Andrew Pospisilik, Patrik Brundin, Lena Brundin, Stewart F. Graham, Viviane Labrie
Software Mentions: 4
Published: almost 4 years ago

10.7717/peerj.9848

Identification of key modules and hub genes associated with lung function in idiopathic pulmonary fibrosis
Cited by: 5
Author(s): Yuechong Xia, Lei Cheng, Danhui Yang, Hong Luo
Software Mentions: 4
Published: over 4 years ago

10.3389/fgene.2021.647521

Exploration of Prognostic Biomarkers for Lung Adenocarcinoma Through Bioinformatics Analysis
Cited by: 9
Author(s): Zhengliang Tu, Xue He, Liping Zeng, Di Meng, Runzhou Zhuang, Jiangang Zhao, Wanrong Dai
Software Mentions: 4
Published: over 3 years ago

10.3389/fgene.2020.00253

Integrated Analysis to Evaluate the Prognostic Value of Signature mRNAs in Glioblastoma Multiforme
Cited by: 11
Author(s): Jian Yang, Long Wang, Zhou Xu, Liquan Wu, Baohui Liu, Junmin Wang, Daofeng Tian, Xiaoxing Xiong, Qianxue Chen
Software Mentions: 4
Published: over 4 years ago

10.3389/fgene.2018.00265

Identification of Potential Key Genes Associated With the Pathogenesis and Prognosis of Gastric Cancer Based on Integrated Bioinformatics Analysis
Cited by: 119
Author(s): Xinkui Liu, Jiarui Wu, Dan Zhang, Zhitong Bing, Jinhui Tian, Mengwei Ni, Xiaomeng Zhang, Ziqi Meng, Shuyu Liu
Software Mentions: 4
Published: over 6 years ago

10.3389/fonc.2020.541479

Identification and Validation of Novel Biomarkers for Diagnosis and Prognosis of Hepatocellular Carcinoma
Cited by: 26
Author(s): Xiaoyi Hu, Mingyang Bao, Jiacheng Huang, Lin Zhou, Shusen Zheng
Software Mentions: 4
Published: about 4 years ago

10.3389/fonc.2020.00998

Hypoxia-Induced lncRNA-NEAT1 Sustains the Growth of Hepatocellular Carcinoma via Regulation of miR-199a-3p/UCK2
Cited by: 31
Author(s): Qiangnu Zhang, Cheng Qian, Mengna Xia, Xuan Huang, He Xu, Juan Liao
Software Mentions: 4
Published: over 4 years ago

10.1186/s12967-020-02327-7

Identification of hub genes in papillary thyroid carcinoma: robust rank aggregation and weighted gene co-expression network analysis
Cited by: 15
Author(s): Yang Liu, Ting‐Yu Chen, Zhi-Yan Yang, Wei Bin Fang, Qian Wu, Zhang Chao
Software Mentions: 4
Published: over 4 years ago

10.3389/fgene.2020.573877

Analysis of Hub Genes Involved in Distinction Between Aged and Fetal Bone Marrow Mesenchymal Stem Cells by Robust Rank Aggregation and Multiple Functional Annotation Methods
Cited by: 6
Author(s): Xiaoyao Liu, Mingjing Yin, Junlong Da, Kai Zhang, Xinjian Zhang, Lixue Liu, Jianqun Wang, Han Jin, Zhongshuang Liu, Bin Zhang, Ying Li
Software Mentions: 3
Published: about 4 years ago

10.3390/ijms19113557

Identification of Potential Key Genes Associated with Adipogenesis through Integrated Analysis of Five Mouse Transcriptome Datasets
Cited by: 10
Author(s): Song Zhang, Li Wang, Shijun Li, Wenzhen Zhang, Xiaoxing Ma, Gong Chen, Wenguang Yang, Zan Liu
Software Mentions: 3
Published: about 6 years ago

10.3389/fgene.2021.683173

Expression of AOX1 Predicts Prognosis of Clear Cell Renal Cell Carcinoma
Cited by: 3
Author(s): Luyang Xiong, Yuchen Feng, Wei Hu, Jiahong Tan, Shusheng Li, Hongjie Wang
Software Mentions: 3
Published: over 3 years ago

10.3389/fonc.2021.621806

Mining of RNA Methylation-Related Genes and Elucidation of Their Molecular Biology in Gallbladder Carcinoma
Cited by: 8
Author(s): Chengliang Yang, Jialei Chen, Zhe Yu, Jing Luo, Xuemei Li, Baoyong Zhou, Ning Jiang
Software Mentions: 3
Published: almost 4 years ago

10.3389/fonc.2019.00996

Identification of a Nine-Gene Signature and Establishment of a Prognostic Nomogram Predicting Overall Survival of Pancreatic Cancer
Cited by: 131
Author(s): Mei Wu, Xiaobin Li, Taiping Zhang, Ziwen Liu, Yupei Zhao
Software Mentions: 3
Published: about 5 years ago

10.1186/s12967-018-1593-5

A circRNA–miRNA–mRNA network identification for exploring underlying pathogenesis and therapy strategy of hepatocellular carcinoma
Cited by: 199
Author(s): Dandan Xiong, Yi‐Wu Dang, Peng Lin, Dong‐Yue Wen, Rong‐Quan He, Dan Luo, Zhaoyong Feng, Gang Chen
Software Mentions: 3
Published: over 6 years ago

10.1186/s12935-019-0905-z

Identification of circRNA–miRNA–mRNA regulatory network in gastric cancer by analysis of microarray data
Cited by: 74
Author(s): Yongjun Guan, Jianying Ma, Wei Song
Software Mentions: 3
Published: over 5 years ago

10.1016/j.gpb.2018.10.004

C: Consensus Cancer Driver Gene Caller
Cited by: 2
Author(s): Chenyu Zhu, Chi Zhou, Yun-Qin Chen, Albert Yuh-Jer Shen, Zong-Ming Guo, Zhaoyi Yang, Xiangyun Ye, Shen Qu, Jia Wei, Qi Liu
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-021-96274-y

Integrated bioinformatics analysis of differentially expressed genes and immune cell infiltration characteristics in Esophageal Squamous cell carcinoma
Cited by: 14
Author(s): Feng Zuo, Jingge Qu, Xiao Liu, Jinghui Liang, Yongmeng Li, Jianhua Jin, Huiying Zhang, Hui Tian
Software Mentions: 3
Published: over 3 years ago

10.1155/2019/6469420

Integrated Analysis of Oncogenic Networks in Colorectal Cancer Identifies GUCA2A as a Molecular Marker
Cited by: 24
Author(s): Hui Zhang, Yuanyuan Du, Zhuo Wang, Rui Lou, Jianzhong Wu, Jifeng Feng
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0238175

Time-series transcriptomic analysis reveals novel gene modules that control theanine biosynthesis in tea plant (Camellia sinensis)
Cited by: 2
Author(s): Haisheng Cao, Xiaolong He, Jinke Du, Rui Zhang, Ying Chen, Yan Ma, Qi Chen, Congbing Fang, Chi Tang Ho, Shihua Zhang, Xiaochun Wan
Software Mentions: 3
Published: over 4 years ago

10.3389/fcvm.2021.680065

Analysis of Hub Genes and the Mechanism of Immune Infiltration in Stanford Type a Aortic Dissection
Cited by: 11
Author(s): Haoyu Gao, Xiaogang Sun, Yanxiang Liu, Shenghua Liang, Bowen Zhang, Luchen Wang, Ji-Hua Ren
Software Mentions: 3
Published: over 3 years ago

10.3389/fimmu.2020.580838

IFIH1 Contributes to M1 Macrophage Polarization in ARDS
Cited by: 14
Author(s): Zhen Shi, Cuilin Chu, Zongsheng Wu, Feng Liu, Jianfeng Xie, Yi Yang, Haibo Qiu
Software Mentions: 2
Published: almost 4 years ago

10.1534/g3.120.401718

The Utility of Resolving Asthma Molecular Signatures Using Tissue-Specific Transcriptome Data
Cited by: 11
Author(s): Debajyoti Ghosh, Lili Ding, Jonathan A. Bernstein, Tesfaye B. Mersha
Software Mentions: 2
Published: about 4 years ago

10.3389/fonc.2021.714866

Identification of Hub Genes Related to Liver Metastasis of Colorectal Cancer by Integrative Analysis
Cited by: 9
Author(s): Sicheng Liu, Yaguang Zhang, Su Zhang, Lei Qiu, Bo Zhang, Junhong Han
Software Mentions: 2
Published: over 3 years ago

10.1155/2021/5570731

Colonic Epithelial PHLPP2 Deficiency Promotes Colonic Epithelial Pyroptosis by Activating the NF-κB Signaling Pathway
Cited by: 8
Author(s): Defeng Li, Xin Chang, Jiulong Zhao, Xuanmin Chen, Zefeng Xu, Dingguo Zhang, Ben-Hua Wu, Lisheng Wang, Yu Bai, Jun Yao
Software Mentions: 2
Published: over 3 years ago

10.1155/2020/1705867

Radiosensitivity-Related Genes and Clinical Characteristics of Nasopharyngeal Carcinoma
Cited by: 4
Author(s): Yongmei Dai, Yue Zhang, Mi Yang, Liang Zhou, Hua Pan, Ting Xiao, Yuan Lu, Yuting Wu, Min Chen, Longhua Chen, Jian Guan
Software Mentions: 2
Published: about 4 years ago

10.3389/fonc.2020.618902

Comprehensively Analyzed Macrophage-Regulated Genes Indicate That PSMA2 Promotes Colorectal Cancer Progression
Cited by: 6
Author(s): J. Qi, Zhiqiu Hu, Shaoqun Liu, Fan Li, Sheng Wang, Wuqing Wang, Xia Sheng, Feng Li
Software Mentions: 2
Published: almost 4 years ago

10.3389/fgene.2018.00469

Identification of Candidate Biomarkers Correlated With the Pathogenesis and Prognosis of Non-small Cell Lung Cancer via Integrated Bioinformatics Analysis
Cited by: 87
Author(s): Mengwei Ni, Xinkui Liu, Jiarui Wu, Dan Zhang, Jinhui Tian, Ting Wang, Shuyu Liu, Ziqi Meng, Kaihuan Wang, Xiaojiao Duan, Wei Zhou, Xiaomeng Zhang
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0140862

Integrated Analysis Reveals together miR-182, miR-200c and miR-221 Can Help in the Diagnosis of Prostate Cancer
Cited by: 7
Author(s): Yinmin Gu, Danqing Lei, Xia Qin, Panyu Chen, Yi Ming Zou, Yanling Hu
Software Mentions: 2
Published: about 9 years ago

10.3389/fpls.2016.01914

A Meta-Analysis Based Method for Prioritizing Candidate Genes Involved in a Pre-specific Function
Cited by: 12
Author(s): Jingjing Zhai, Yunjia Tang, Hao Yuan, Longteng Wang, Haoli Shang, Chuang Ma
Software Mentions: 2
Published: about 8 years ago

10.1186/s13048-020-00715-7

Integrative analysis of the common genetic characteristics in ovarian cancer stem cells sorted by multiple approaches
Cited by: 5
Author(s): Xiaoxiao Zhang, Yue Su, Xue Wu, Rourou Xiao, Yifan Wu, Bin Yang, Zhen Wang, Lili Guo, Xiaoyan Kang, Changyu Wang
Software Mentions: 2
Published: about 4 years ago

10.7717/peerj.6036

Identification of key candidate genes and biological pathways in bladder cancer
Cited by: 72
Author(s): Xīn Gào, Yinyi Chen, Mei Chen, Shunlan Wang, Xiaohong Wen, Shufang Zhang
Software Mentions: 1
Published: about 6 years ago

10.7717/peerj.11458

miRcorrNet: machine learning-based integration of miRNA and mRNA expression profiles, combined with feature grouping and ranking
Cited by: 14
Author(s): Malik Yousef, Gokhan Goy, Ramkrishna Mitra, Christine M. Eischen, Amhar Jabeer, Burcu Bakir-Gungor
Software Mentions: 1
Published: over 3 years ago

10.1093/database/bav015

Colorectal cancer drug target prediction using ontology-based inference and network analysis
Cited by: 23
Author(s): Cui Tao, Jingjing Sun, W. Jim Zheng, Junjie Chen, Hua Xu
Software Mentions: 1
Published: almost 10 years ago

10.18632/aging.104107

Construction of circRNA-based ceRNA network to reveal the role of circRNAs in the progression and prognosis of metastatic clear cell renal cell carcinoma
Cited by: 22
Author(s): Xiao‐Hong Wei, Yulan Dong, Xinglin Chen, Xiaohan Ren, Guangyao Li, Yamin Wang, Yichun Wang, Tongtong Zhang, Shangqian Wang, Chao Qin, Ninghong Song
Software Mentions: 1
Published: about 4 years ago

10.7717/peerj.7408

Identification of significant gene and pathways involved in HBV-related hepatocellular carcinoma by bioinformatics analysis
Cited by: 34
Author(s): Shucai Xie, Xili Jiang, Jianquan Zhang, Shaowei Xie, Yongyong Hua, Rui Wang, Yijun Yang
Software Mentions: 1
Published: over 5 years ago

10.1186/s12957-017-1244-y

Analysis of microRNA (miRNA) expression profiles reveals 11 key biomarkers associated with non-small cell lung cancer
Cited by: 45
Author(s): Ke Wang, Mingwei Chen, Wei Wu
Software Mentions: 1
Published: over 7 years ago

Projects: cran: RobustRankAggreg

Papers Mentioning RobustRankAggreg 57