cran: exactRankTests | Projects | Ecosyste.ms: Papers

10.1038/s41396-020-00814-9

Food or just a free ride? A meta-analysis reveals the global diversity of the Plastisphere
Cited by: 96
Author(s): Robyn J. Wright, Morgan G. I. Langille, Tony R. Walker
Software Mentions: 23
Published: about 4 years ago

10.1038/s41598-021-87843-2

Bodily ownership and agency sensations in a natural state
Cited by: 1
Author(s): Souta Hidaka, Kyoshiro Sasaki, Toshikazu Kawagoe, Nobuyuki Asai, Wataru Teramoto
Software Mentions: 15
Published: over 3 years ago

10.1371/journal.pgen.1008831

Behavioral and brain- transcriptomic synchronization between the two opponents of a fighting pair of the fish Betta splendens
Cited by: 18
Author(s): Trieu-Duc Vu, Yoshiaki Iwasaki, Shuji Shigenobu, Akiko Maruko, Koichiro Oshima, Erica Iioka, Chao Li Huang, Takashi Abe, Satoshi Tamaki, Yi-Sheng Lin, Chih Kuan Chen, Mei-Yeh Jade Lu, Masaru Hojo, Hao Ven Wang, Shun Fen Tzeng, Hao Huang, Akio Kanai, Takashi Gojobori, Tzen‐Yuh Chiang, Han Sun, Wen-Hsiung Li, Norihiro Okada
Software Mentions: 10
Published: over 4 years ago

10.1038/srep40950

Unique Bacteria Community Composition and Co-occurrence in the Milk of Different Ruminants
Cited by: 21
Author(s): Zhipeng Li, André‐Denis G. Wright, Yumei Yang, Huazhe Si, Guangyu Li
Software Mentions: 9
Published: almost 8 years ago

10.1038/s41598-018-29378-7

Epigenetic and transcriptional dysregulation of VWA2 associated with a MYC-driven oncogenic program in colorectal cancer
Cited by: 7
Author(s): Beatríz González, Ferran Fece de la Cruz, Johanna Samuelsson, Andreu Alibés, Sergio Alonso
Software Mentions: 8
Published: over 6 years ago

10.1038/s41598-019-43829-9

Tissue-specific genes as an underutilized resource in drug discovery
Cited by: 29
Author(s): Maria Ryaboshapkina, Mårten Hammar
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.pone.0211601

Testing the potential of 50 kHz rat calls as a species-specific rat attractant
Cited by: 7
Author(s): Nicola B. Davidson, Jane L. Hurst
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.pone.0253779

Altered states phenomena induced by visual flicker light stimulation
Cited by: 7
Author(s): Marie Therese Bartossek, Johanna Kemmerer, Timo Torsten Schmidt
Software Mentions: 7
Published: over 3 years ago

10.1186/s13054-019-2701-5

Impact of acyclovir use on survival of patients with ventilator-associated pneumonia and high load herpes simplex virus replication
Cited by: 38
Author(s): Lukas Schuierer, Michael Gebhard, Hans-Georg Ruf, Ulrich Jaschinski, Thomas M. Berghaus, Michael Wittmann, Georg Braun, Dirk H. Busch, Reinhard Hoffmann
Software Mentions: 6
Published: almost 5 years ago

10.1038/s41598-021-87982-6

Association among extracellular superoxide dismutase genotype, plasma concentration, and comorbidity in the very old and centenarians
Cited by: 7
Author(s): Takashi Sasaki, Yukiko Abe, M. Takayama, Tetsuo Adachi, Hideyuki Okano, Nobuyoshi Hirose, Yasumichi Arai
Software Mentions: 6
Published: over 3 years ago

10.1038/s41419-019-1453-0

Organoids as a new model for improving regenerative medicine and cancer personalized therapy in renal diseases
Cited by: 101
Author(s): Ludovica Grassi, Romina Alfonsi, Federica Francescangeli, Michele Signore, Maria Laura De Angelis, Antonio Addario, Manuela Costantini, Elisabetta Flex, Andrea Ciolfi, Simone Pizzi, Alessandro Bruselles, Matteo Pallocca, Giuseppe Simone, Mustapha Haoui, Mario Falchi, Michèle Milella, Steno Sentinelli, P. Di Matteo, Emilia Stellacci, Michele Gallucci, Giovanni Muto, Marco Tartaglia, Ruggero De Maria, Désirée Bonci
Software Mentions: 6
Published: almost 6 years ago

10.1038/s41598-021-92982-7

Evaluation of emotional arousal level and depression severity using voice-derived sound pressure change acceleration
Cited by: 1
Author(s): Shuji Shinohara, Hiroyuki Toda, Mitsuteru Nakamura, Yasuhiro Omiya, Masakazu Higuchi, Takeshi Takano, Taku Saito, Masaaki Tanichi, Shuken Boku, Shunji Mitsuyoshi, Mirai So, Aihide Yoshino, Shinichi Tokuno
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pone.0203625

Mean platelet volume and lymphocyte-to-monocyte ratio are associated with shorter progression-free survival in EGFR-mutant lung adenocarcinoma treated by EGFR tyrosine kinase inhibitor
Cited by: 28
Author(s): Kousuke Watanabe, Atsushi Yasumoto, Yosuke Amano, Hidenori Kage, Yasushi Goto, Yutaka Yatomi, Daiya Takai, Takahide Nagase
Software Mentions: 5
Published: over 6 years ago

10.1038/s41598-018-21222-2

Prime and Boost Vaccination Elicit a Distinct Innate Myeloid Cell Immune Response
Cited by: 26
Author(s): Jean-Louis Palgen, Nicolas Tchitchek, Jamila Elhmouzi-Younes, Simon Delandre, Inana Namet, Pierre Rosenbaum, Nathalie Dereuddre‐Bosquet, Frédéric Martinon, Antonio Cosma, Yves Lévy, Roger Le Grand, Anne-Sophie Beignon
Software Mentions: 4
Published: almost 7 years ago

10.1038/srep16442

Bonobos modify communication signals according to recipient familiarity
Cited by: 31
Author(s): Émilie Genty, Christof Neumann, Klaus Zuberbühler
Software Mentions: 4
Published: about 9 years ago

10.1098/rsos.170720

Space partitioning in wild, non-territorial mountain gorillas: the impact of food and neighbours
Cited by: 32
Author(s): Nicole Seiler, Christophe Boesch, Roger Mundry, Colleen R. Stephens, Martha M. Robbins
Software Mentions: 4
Published: about 7 years ago

10.1038/s41598-020-73307-6

Exhaustive identification of conserved upstream open reading frames with potential translational regulatory functions from animal genomes
Cited by: 6
Author(s): Hiro Takahashi, Shido Miyaki, Hitoshi Onouchi, Taichiro Motomura, Nobuo Idesako, Atsushi Takahashi, Masataka Murase, Shuichi Fukuyoshi, Toshinori Endo, Kenji Satou, Shuichi Naito, Motoyuki Itoh
Software Mentions: 4
Published: about 4 years ago

10.1038/s41598-020-65883-4

Anguillid eels as a surrogate species for conservation of freshwater biodiversity in Japan
Cited by: 18
Author(s): Hikaru Itakura, Ryoshiro Wakiya, Matthew Gollock, Kenzo Kaifu
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pgen.1005123

Nxf1 Natural Variant E610G Is a Semi-dominant Suppressor of IAP-Induced RNA Processing Defects
Cited by: 10
Author(s): Dorothy Concepcion, Kevin D. Ross, Kasey R. Hutt, G Yeo, Bruce A. Hamilton
Software Mentions: 4
Published: over 9 years ago

10.1186/s12864-020-6662-5

Comprehensive genome-wide identification of angiosperm upstream ORFs with peptide sequences conserved in various taxonomic ranges using a novel pipeline, ESUCA
Cited by: 12
Author(s): Hiro Takahashi, Noriya Hayashi, Yuta Hiragori, Shun Sasaki, Taichiro Motomura, Yoshihisa Yamashita, Shuichi Naito, Atsushi Takahashi, Kazuyuki Fuse, Kenji Satou, Toshinori Endo, Shoko Kojima, Hitoshi Onouchi
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0240171

Tracing gestation and lactation in free ranging gray whales using the stable isotopic composition of epidermis layers
Cited by: 7
Author(s): Michelle Gelippi, Brian N. Popp, Marco F. W. Gauger, Javier Caraveo-Patiño
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0177480

Anomalous diffusion on the servosphere: A potential tool for detecting inherent organismal movement patterns
Cited by: 29
Author(s): Naohisa Nagaya, Nobuaki Mizumoto, Masato S. Abe, Shigeto Dobata, Ryota Sato, Ryusuke Fujisawa
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0031505

Uniform Approximation Is More Appropriate for Wilcoxon Rank-Sum Test in Gene Set Analysis
Cited by: 10
Author(s): Zhide Fang, Ruofei Du, Xiangqin Cui
Software Mentions: 4
Published: almost 13 years ago

10.1186/s12915-018-0509-4

Madagascar ground gecko genome analysis characterizes asymmetric fates of duplicated genes
Cited by: 39
Author(s): Yuichiro Hara, Miki Takeuchi, Yuka Kageyama, Kaori Tatsumi, Masahiko Hibi, Hiroshi Kanazawa, Shigehiro Kuraku
Software Mentions: 3
Published: over 6 years ago

10.1002/ece3.6279

Effects of sampling seasons and locations on fish environmental DNA metabarcoding in dam reservoirs
Cited by: 27
Author(s): Kana Hayami, Masato Sakata, Takashi Inagawa, Jiro Okitsu, Izumi Katano, Hideyuki Doi, Katsuki Nakai, Hidetaka Ichiyanagi, Ryo O. Gotoh, Masaki Miya, Hirotoshi Sato, Hiroki Yamanaka, Toshifumi Minamoto
Software Mentions: 3
Published: over 4 years ago

10.1038/s41598-018-28174-7

Group size effects on inter-blink interval as an indicator of antipredator vigilance in wild baboons
Cited by: 13
Author(s): Akiko Matsumoto‐Oda, Kohei Okamoto, Keiichi Takahashi, Hideki Ohira
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0202858

Comparative evaluation of a new magnetic bead-based DNA extraction method from fecal samples for downstream next-generation 16S rRNA gene sequencing
Cited by: 14
Author(s): Kara D. McGaughey, Tulay Yilmaz-Swenson, Nourhan M. Elsayed, Dianne A. Cruz, Ramona Rodriguez, Michael D. Kritzer, Angel V. Peterchev, Megan Gray, Samantha R. Lewis, Jeffrey Roach, William C. Wetsel, Douglas E. Williamson
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-021-97666-w

A symbiotic aphid selfishly manipulates attending ants via dopamine in honeydew
Cited by: 5
Author(s): Tatsumi Kudo, Hitoshi Aonuma, Eisuke Hasegawa
Software Mentions: 3
Published: over 3 years ago

10.1264/jsme2.ME19077

Distribution of SNSs in Mimivirus Genomes and the Classification of Mimiviruses Isolated from Japan
Cited by: 1
Author(s): Motohiro Akashi, Masaharu Takemura
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0180278

Agonistic interactions between the honeybee (Apis mellifera ligustica) and the European wasp (Vespula germanica) reveal context-dependent defense strategies
Cited by: 9
Author(s): Michelina Pusceddu, Ignazio Floris, Franco Buffa, Emanuele Salaris, Alberto Satta
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0142051

Validation of a Novel Collection Device for Non-Invasive Urine Sampling from Free-Ranging Animals
Cited by: 22
Author(s): Lisa M. Danish, Michael Heistermann, Muhammad Agil, Antje Engelhardt
Software Mentions: 3
Published: about 9 years ago

10.1002/ajp.22114

Social Tolerance in Wild Female Crested Macaques ( Macaca nigra) in Tangkoko‐Batuangus Nature Reserve, Sulawesi, Indonesia
Cited by: 68
Author(s): Julie Duboscq, Jérôme Micheletta, Muhammad Agil, Keith Hodges, Bernard Thierry, Antje Engelhardt
Software Mentions: 2
Published: almost 12 years ago

10.1186/1471-2148-11-300

What are the consequences of combining nuclear and mitochondrial data for phylogenetic analysis? Lessons from Plethodonsalamanders and 13 other vertebrate clades
Cited by: 86
Author(s): M. Caitlin Fisher‐Reid, John J. Wiens
Software Mentions: 2
Published: about 13 years ago

10.1186/2046-2395-2-5

Lifespan extension and delay of age-related functional decline caused by Rhodiola roseadepends on dietary macronutrient balance
Cited by: 40
Author(s): Dmytro V. Gospodaryov, Ihor S. Yurkevych, Mahvash Jafari, Volodymyr I. Lushchak, Oleh Lushchak
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0129280

Combined Targeted DNA Sequencing in Non-Small Cell Lung Cancer (NSCLC) Using UNCseq and NGScopy, and RNA Sequencing Using UNCqeR for the Detection of Genetic Aberrations in NSCLC
Cited by: 35
Author(s): Xiaobei Zhao, Anyou Wang, Vonn Walter, Nirali M. Patel, David A. Eberhard, Michele C. Hayward, Ashley H. Salazar, Heejoon Jo, Matthew G. Soloway, Matthew D. Wilkerson, Joel S. Parker, Xiaoying Yin, Guosheng Zhang, Marni B. Siegel, Gary B. Rosson, H. Shelton Earp, Norman E. Sharpless, Margaret L. Gulley, Karen E. Weck, D. Neil Hayes, Stergios J. Moschos
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0178655

Vocalizations during post-conflict affiliations from victims toward aggressors based on uncertainty in Japanese macaques
Cited by: 1
Author(s): Noriko Katsu, Kazunori Yamada, Masayuki Nakamichi
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0145443

Social Preference in Preschoolers: Effects of Morphological Self-Similarity and Familiarity
Cited by: 14
Author(s): Nadja Richter, Bernard Tiddeman, Daniel B. M. Haun
Software Mentions: 2
Published: almost 9 years ago

10.1186/2041-1480-3-S3-S5

Ranking relations between diseases, drugs and genes for a curation task
Cited by: 18
Author(s): Simon Clematide, Fabio Rinaldi
Software Mentions: 2
Published: almost 13 years ago

10.1098/rsos.150720

Sexual selection of male parental care in giant water bugs
Cited by: 14
Author(s): Shin‐ya Ohba, Noboru Okuda, Shinichi Kudo
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-020-60423-6

Functions of post-conflict bystander affiliations toward aggressors and victims in bottlenose dolphins
Cited by: 4
Author(s): Chisato Yamamoto, Tomoko Ishibashi, Nobuyuki Kashiwagi, Masao Amano
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12862-018-1164-7

Assessing the benefits of horizontal gene transfer by laboratory evolution and genome sequencing
Cited by: 30
Author(s): Hoi Yee Chu, Kathleen Sprouffske, Andreas Wagner
Software Mentions: 1
Published: over 6 years ago

10.3390/jcm8050612

Stem Cells Inhibition by Bevacizumab in Combination with Neoadjuvant Chemotherapy for Breast Cancer
Cited by: 5
Author(s): Renaud Sabatier, Emmanuelle Charafe‐Jauffret, Jean‐Yves Pierga, Hervé Cure, Éric Lambaudie, Dominique Genre, Gilles Houvenaeghel, Patrice Viens, Christophe Ginestier, François Bertucci, Patrick Sfumato, Jean-Marc Extra, Anthony Gonçalvès
Software Mentions: 1
Published: over 5 years ago

10.1128/mBio.01976-19

Population Structure and Genetic Diversity among Isolates of Coccidioides posadasii in Venezuela and Surrounding Regions
Cited by: 27
Author(s): Marcus M. Teixeira, Primavera Alvarado, Chandler C. Roe, George R. Thompson, José Salvatore Leister Patané, Jason W. Sahl, Paul Keim, John N. Galgiani, Anastasia P. Litvintseva, Daniel R. Matute, Bridget M. Barker
Software Mentions: 1
Published: almost 5 years ago

10.3389/fpls.2020.01218

A Leaf-Mimicking Method for Oral Delivery of Bioactive Substances Into Sucking Arthropod Herbivores
Cited by: 11
Author(s): Noureldin Abuelfadl Ghazy, Mayo Okamura, Kanae Sai, Sota Yamakawa, Faten Hamdi, Vojislava Grbić, Takeshi Suzuki
Software Mentions: 1
Published: over 4 years ago

10.3389/fmicb.2018.01755

Nutrient Dependent Cross-Kingdom Interactions: Fungi and Bacteria From an Oligotrophic Desert Oasis
Cited by: 30
Author(s): Patricia Vélez, Laura Espinosa-Asuar, Mario Figueroa, Jaime Gasca-Pineda, Eneas Aguirre‐von‐Wobeser, Luis E. Eguiarte, Abril Hernández-Monroy, Valeria Souza
Software Mentions: 1
Published: over 6 years ago

10.1002/ece3.6637

Hot spring frogs (Buergeria japonica) prefer cooler water to hot water
Cited by: 4
Author(s): Shohei Komaki, Yoichi Sutoh, Kensuke Kobayashi, Shigeru Saito, Claire T. Saito, Takeshi Igawa, Quintin Lau
Software Mentions: 1
Published: over 4 years ago

10.1038/srep43833

Efficient and reliable establishment of lymphoblastoid cell lines by Epstein-Barr virus transformation from a limited amount of peripheral blood
Cited by: 12
Author(s): Natsue Omi, Yoshiyuki Tokuda, Yoko Ikeda, Masaki Ueno, Kazuhiko Mori, Chie Sotozono, Shigeru Kinoshita, Masakazu Nakano, Kei Tashiro
Software Mentions: 1
Published: almost 8 years ago

10.1016/j.csbj.2021.05.049

Profiling of host genetic alterations and intra-tumor microbiomes in colorectal cancer
Cited by: 12
Author(s): Shujiro Okuda, Yasuhiro Shimada, Yosuke Tajima, Kizuki Yuza, Yuki Hirose, Hiroshi Ichikawa, Masayuki Nagahashi, Jun Sakata, Yiwei Ling, Nobuaki Miura, Mika Sugai, Yu Watanabe, S. Takeuchi, Toshifumi Wakai
Software Mentions: 1
Published: almost 4 years ago

10.3390/clinpract11030063

The Role of the Nurse in Informed Consent to Treatments: An Observational-Descriptive Study in the Padua Hospital
Cited by: 1
Author(s): Veronica Strini, Roberta Schiavolin, Angela Prendin
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0102666

Generalize or Personalize - Do Dogs Transfer an Acquired Rule to Novel Situations and Persons?
Cited by: 5
Author(s): Anne G. Hertel, Juliane Kaminski, Michael Tomasello
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pntd.0002532

Combinatory Microarray and SuperSAGE Analyses Identify Pairing-Dependently Transcribed Genes in Schistosoma mansoni Males, Including Follistatin
Cited by: 36
Author(s): Silke Leutner, Kátia C. Oliveira, Björn Rotter, Svenja Beckmann, Christin Buro, Steffen Hahnel, João Paulo Kitajima, Sérgio Verjovski-Almeida, Peter Winter, Christoph G. Grevelding
Software Mentions: 1
Published: about 11 years ago

10.1186/s12873-019-0258-x

Usefulness of a stool to stabilize dental chairs for cardiopulmonary resuscitation (CPR)
Cited by: 7
Author(s): Norimasa Awata, Takashi Hitosugi, Yōichiro Miki, Masanori Tsukamoto, Yoshifumi Kawakubo, Takeshi Yokoyama
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1004071

Accurate Computation of Survival Statistics in Genome-Wide Studies
Cited by: 23
Author(s): Fabio Vandin, Alexandra Papoutsaki, Benjamin J. Raphael, Eli Upfal
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pctr.0020012

Phase 1 Study of Two Merozoite Surface Protein 1 (MSP142) Vaccines for Plasmodium falciparum Malaria
Cited by: 73
Author(s): Elissa Malkin, Carole A. Long, Anthony W. Stowers, Lanling Zou, Sanjay Singh, Nicholas J. MacDonald, David L. Narum, Aaron P. Miles, Andrew C. Orcutt, Olga Muratova, Samuel E. Moretz, Hong Zhou, Ababacar Diouf, Michael P. Fay, E L Tierney, Philip T. Leese, Siddhartha Mahanty, Louis H. Miller, Allan Saul, Laura B. Martin
Software Mentions: 1
Published: over 17 years ago

10.1371/journal.pbio.1002368

Science Educational Outreach Programs That Benefit Students and Scientists
Cited by: 80
Author(s): Greg Clark, Joshua Russell, Peter J. Enyeart, Brant Gracia, Aimee K. Wessel, Inga Jarmoskaite, Damon Polioudakis, Yoel E. Stuart, Tony Gonzalez, Al MacKrell, Stacia E. Rodenbusch, Gwendolyn M. Stovall, Josh T. Beckham, M. H. Montgomery, Tania Tasneem, Jack Doyle Jones, Sarah Simmons, Stanley J. Roux
Software Mentions: 1
Published: almost 9 years ago

10.1155/2014/435056

Standardised Models for Inducing Experimental Peritoneal Adhesions in Female Rats
Cited by: 36
Author(s): Bernhard Kraemer, Christian W. Wallwiener, Taufiek Konrad Rajab, Christoph Brochhausen, Markus Wallwiener, Ralf Rothmund
Software Mentions: 1
Published: almost 11 years ago

10.1186/1756-0500-7-780

The defect of SFRP2 modulates an influx of extracellular calcium in B lymphocytes
Cited by: 4
Author(s): Yoshiyuki Tokuda, Masami Tanaka, T. Yagi, Kei Tashiro
Software Mentions: 1
Published: about 10 years ago

10.3389/fpsyt.2021.744816

Safety Net Provider Attitudes Toward Smoking Cessation Treatment
Cited by: 1
Author(s): Lindsay R. Meredith, Wave‐Ananda Baskerville, Theodore C. Friedman, Brian Hurley, Tasha Dixon, Norma Mtume, Luz M. Rodríguez, Briana Lopez, Scott S. Hsieh, Lara A. Ray
Software Mentions: 1
Published: about 3 years ago

10.3389/fnsys.2021.645308

Motility Profile of Captive-Bred Marmosets Revealed by a Long-Term In-Cage Monitoring System
Cited by: 2
Author(s): Masashi Koizumi, Naotake Nogami, Kensuke Owari, Akiyo Kawanobe, Terumi Nakatani, Kazuhiko Seki
Software Mentions: 1
Published: over 3 years ago

10.1186/1297-9686-42-28

Estimation of relatedness among non-pedigreed Yakutian cryo-bank bulls using molecular data: implications for conservation and breed management
Cited by: 10
Author(s): Ilma Tapio, Miika Tapio, Menghua Li, Ruslan Popov, Zoya Ivanova, Juha Kantanen
Software Mentions: 1
Published: over 14 years ago

Projects: cran: exactRankTests

Papers Mentioning exactRankTests 60