Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: distruct
https://packages.ecosyste.ms/registries/pypi.org/packages/distruct
a package to generate 3d molecular structures from distance constraints
15 versions
Latest release: over 4 years ago
42 downloads last month
Papers Mentioning distruct 61
10.1111/mec.15239
Host plant‐related genomic differentiation in the European cherry fruit fly, <i>Rhagoletis cerasi</i>Cited by: 10
Author(s): Vid Baković, Hannes Schuler, Martin Schebeck, Jeffrey L. Feder, Christian Stauffer, Gregory J. Ragland
Software Mentions: 7
Published: about 5 years ago
10.7717/peerj.5660
Population genetics of the main population of brown bears in southwest AsiaCited by: 37
Author(s): Hüseyin Ambarlı, Deniz Mengüllüoğlu, Jörns Fickel, Daniel W. Förster
Software Mentions: 7
Published: about 6 years ago
10.1002/ece3.5406
Quaternary climate change and habitat preference shaped the genetic differentiation and phylogeography of<i>Rhodiola</i>sect.<i>Prainia</i>in the southern Qinghai–Tibetan PlateauCited by: 8
Author(s): Zi‐Meng Wang, Shi‐Yong Meng, Guang‐Yuan Rao
Software Mentions: 7
Published: over 5 years ago
10.1111/mec.13644
Unidirectional diploid–tetraploid introgression among British birch trees with shifting ranges shown by restriction site‐associated markersCited by: 68
Author(s): Jasmin Zohren, Nian Wang, Igor Kardailsky, James S. Borrell, Anika Joecker, Richard A. Nichols, Richard J. A. Buggs
Software Mentions: 7
Published: over 8 years ago
10.1371/journal.pone.0153108
Integrative Taxonomy of Southeast Asian Snail-Eating Turtles (Geoemydidae: Malayemys) Reveals a New Species and Mitochondrial IntrogressionCited by: 22
Author(s): Flora Ihlow, Melita Vamberger, Morris Flecks, Timo Hartmann, Michael Cota, Sunchai Makchai, Pratheep Meewattana, J. E. Dawson, Long Kheng, Dennis Rödder, Uwe Fritz
Software Mentions: 7
Published: over 8 years ago
10.1002/ece3.5619
Post‐Pleistocene differentiation in a Central Interior Highlands endemic salamanderCited by: 4
Author(s): Jacob J. Burkhart, Emily E. Puckett, Chelsey J. Beringer, Christine Sholy, Raymond D. Semlitsch, Lori S. Eggert
Software Mentions: 6
Published: about 5 years ago
10.1371/journal.pone.0031482
Seascape Genetics of a Globally Distributed, Highly Mobile Marine Mammal: The Short-Beaked Common Dolphin (Genus Delphinus)Cited by: 82
Author(s): Ana Rita Amaral, Luciano B. Beheregaray, Kerstin Bilgmann, Dmitri Boutov, Luís Freitas, Kelly M. Robertson, Marina Sequeira, Karen A. Stockin, M. M. Coelho, Luciana M. Möller
Software Mentions: 6
Published: almost 13 years ago
10.1186/s12864-020-6616-y
Association and linkage mapping to unravel genetic architecture of phenological traits and lateral bearing in Persian walnut (Juglans regia L.)Cited by: 29
Author(s): Anthony Bernard, Annarita Marrano, Armel Donkpegan, Patrick J. Brown, Charles A. Leslie, David B. Neale, Fabrice Lheureux, Elisabeth Dirlewanger
Software Mentions: 6
Published: over 4 years ago
10.1111/mec.14711
Genome‐wide evidence for divergent selection between populations of a major agricultural pathogenCited by: 64
Author(s): Fanny E. Hartmann, Bruce A. McDonald, Daniel Croll
Software Mentions: 6
Published: over 6 years ago
10.1002/ece3.3583
Development of a genotype‐by‐sequencing immunogenetic assay as exemplified by screening for variation in red fox with and without endemic rabies exposureCited by: 5
Author(s): Michael E. Donaldson, Yessica Rico, Karsten Hueffer, Halie M. Rando, Anna V. Kukekova, Christopher J. Kyle
Software Mentions: 5
Published: almost 7 years ago
10.1002/ece3.6195
Major inconsistencies of inferred population genetic structure estimated in a large set of domestic horse breeds using microsatellitesCited by: 12
Author(s): Stephan M. Funk, Sonya Guedaoura, Rytis Juras, Absul Raziq, Faouzi Landolsi, Cristina Luı́s, Amparo Martínez Martínez, Abubakar Musa Mayaki, Fernando Mujica, María do Mar Oom, Lahoussine Ouragh, Yves-Marie Stranger, J. L. Vega‐Pla, E. Gus Cothran
Software Mentions: 5
Published: over 4 years ago
10.1534/g3.117.300495
Inbred or Outbred? Genetic Diversity in Laboratory Rodent ColoniesCited by: 31
Author(s): Thomas D. Brekke, Katherine A. Steele, John F. Mulley
Software Mentions: 4
Published: almost 7 years ago
10.1111/eva.12514
Profiling the immunome of little brown myotis provides a yardstick for measuring the genetic response to white-nose syndromeCited by: 24
Author(s): Michael E. Donaldson, Christina M. Davy, Craig K. R. Willis, Scott McBurney, Allysia Park, Christopher J. Kyle
Software Mentions: 4
Published: about 7 years ago
10.1111/eva.12274
Morphological and genomic comparisons of<scp>H</scp>awaiian and<scp>J</scp>apanese<scp>B</scp>lack‐footed<scp>A</scp>lbatrosses (<i><scp>P</scp>hoebastria nigripes</i>) using double digest<scp>RAD</scp>seq: implications for conservationCited by: 39
Author(s): Elisa G. Dierickx, Allison J. Shultz, Fumio Sato, Takashi Hiraoka, Scott V. Edwards
Software Mentions: 4
Published: over 9 years ago
10.3390/plants10050863
Genetic Diversity of Stratiotes aloides L. (Hydrocharitaceae) Stands across EuropeCited by: 1
Author(s): Barbara Turner, Steffen Hameister, Andreas Hudler, Karl‐Georg Bernhardt
Software Mentions: 4
Published: over 3 years ago
10.1371/journal.pgen.1000419
Recombinational Landscape and Population Genomics of Caenorhabditis elegansCited by: 380
Author(s): Matthew V. Rockman, Leonid Kruglyak
Software Mentions: 4
Published: over 15 years ago
10.3390/insects12070618
Genetic Screening to Identify Candidate Resistance Alleles to Cry1F Corn in Fall Armyworm Using Targeted SequencingCited by: 10
Author(s): Katrina Schlum, Kurt Lamour, P. A. Tandy, Scott J. Emrich, Caroline Placidi De Bortoli, Tejas Rao, Diego M Viteri Dillon, Angela M. Linares‐Ramírez, Juan Luís Jurat-Fuentes
Software Mentions: 4
Published: over 3 years ago
10.1038/s41598-017-07847-9
Hybridization patterns in two contact zones of grass snakes reveal a new Central European snake speciesCited by: 54
Author(s): Carolin Kindler, Maxime Chèvre, Sylvain Ursenbacher, Wolfgang Böhme, Axel Hille, Daniel Jablonski, Melita Vamberger, Uwe Fritz
Software Mentions: 4
Published: over 7 years ago
10.1002/ece3.2819
Outlier analyses to test for local adaptation to breeding grounds in a migratory arctic seabirdCited by: 26
Author(s): Anna Tigano, Allison J. Shultz, Scott V. Edwards, Gregory J. Robertson, Vicki L. Friesen
Software Mentions: 4
Published: over 7 years ago
10.1002/ece3.2810
Testing the role of ancient and contemporary landscapes on structuring genetic variation in a specialist grasshopperCited by: 9
Author(s): Víctor Noguerales, Pedro J. Cordero, Joaquín Ortego
Software Mentions: 4
Published: over 7 years ago
10.1371/journal.pone.0140780
Variation in Complexity of Infection and Transmission Stability between Neighbouring Populations of Plasmodium vivax in Southern EthiopiaCited by: 31
Author(s): Sisay Getachew, Sheren To, Hidayat Trimarsanto, Kamala Thriemer, Taane G. Clark, Beyene Petros, Abraham Aseffa, Sarah Auburn
Software Mentions: 3
Published: about 9 years ago
10.1534/g3.119.400080
Variation in Filamentous Growth and Response to Quorum-Sensing Compounds in Environmental Isolates of<i>Saccharomyces cerevisiae</i>Cited by: 14
Author(s): B. Adam Lenhart, Brianna Meeks, Helen A. Murphy
Software Mentions: 3
Published: over 5 years ago
10.1186/s12862-020-01673-w
The roles of vicariance and isolation by distance in shaping biotic diversification across an ancient archipelago: evidence from a Seychelles caecilian amphibianCited by: 2
Author(s): Simon T. Maddock, Ronald A. Nussbaum, Julia J. Day, Leigh C. Latta, Mark P. Miller, Debra L. Fisk, Mark Wilkinson, Sara Rocha, David J. Gower, Michael E. Pfrender
Software Mentions: 3
Published: about 4 years ago
10.3389/fgene.2020.00218
Comparing the Performance of Microsatellites and RADseq in Population Genetic Studies: Analysis of Data for Pike (Esox lucius) and a Synthesis of Previous StudiesCited by: 64
Author(s): Johanna Sunde, Yeşerin Yıldırım, Petter Tibblin, Anders Forsman
Software Mentions: 3
Published: over 4 years ago
10.1111/eva.12067
Evolutionary dynamics of a rapidly receding southern range boundary in the threatened <scp>C</scp>alifornia <scp>R</scp>ed‐<scp>L</scp>egged <scp>F</scp>rog (<i><scp>R</scp>ana draytonii</i>)Cited by: 22
Author(s): Jonathan Q. Richmond, Kelly R. Barr, Adam R. Backlin, Amy G. Vandergast, Robert N. Fisher
Software Mentions: 3
Published: over 11 years ago
10.1038/s41598-019-43479-x
Populations of the coral species Montastraea cavernosa on the Belize Barrier Reef lack vertical connectivityCited by: 18
Author(s): Ryan J. Eckert, Michael S. Studivan, Joshua D. Voss
Software Mentions: 3
Published: over 5 years ago
10.1371/journal.pone.0186690
Phylogeography of the termite Macrotermes gilvus and insight into ancient dispersal corridors in Pleistocene Southeast AsiaCited by: 7
Author(s): G Veera Singham, Ahmad Sofiman Othman, Chow‐Yang Lee
Software Mentions: 3
Published: almost 7 years ago
10.1111/mec.12740
The impact of translocations on neutral and functional genetic diversity within and among populations of the Seychelles warblerCited by: 43
Author(s): David Wright, Lewis G. Spurgin, Nigel Collar, Jan Komdeur, Terry Burke, David S. Richardson
Software Mentions: 2
Published: over 10 years ago
10.1186/s13071-019-3630-5
Possible transmission of Sarcoptes scabiei between herbivorous Japanese serows and omnivorous Caniformia in Japan: a cryptic transmission and persistence?Cited by: 9
Author(s): Ryota Matsuyama, Toshihiro Yabusaki, Natsuko Senjyu, Tsukasa Okano, Minoru Baba, Tomoka Tsuji-Matsukane, Masahiro Yokoyama, Nobuhide Kido, Teruki Kadosaka, Takuya Kato, Masatsugu Suzuki, Makoto Asano
Software Mentions: 2
Published: over 5 years ago
10.3390/cells8040377
Genetic Diversity and Differentiation at Structurally Varying MHC Haplotypes and Microsatellites in Bottlenecked Populations of Endangered Crested IbisCited by: 16
Author(s): Hong Li, Tong Zhou, Qiu‐Hong Wan, Sheng‐Guo Fang
Software Mentions: 2
Published: over 5 years ago
10.7717/peerj.1019
Population structure among octocoral adults and recruits identifies scale dependent patterns of population isolation in The BahamasCited by: 12
Author(s): Howard R. Lasker, Isabel Porto-Hannes
Software Mentions: 2
Published: over 9 years ago
10.1111/eva.12160
Loss of genetic integrity in wild lake trout populations following stocking: insights from an exhaustive study of 72 lakes from <scp>Q</scp>uébec, <scp>C</scp>anadaCited by: 73
Author(s): Éliane Valiquette, Charles Perrier, Isabel Thibault, Louis Bernatchez
Software Mentions: 2
Published: over 10 years ago
10.1002/ece3.5219
Yellow perch genetic structure and habitat use among connected habitats in eastern Lake MichiganCited by: 8
Author(s): Gregory M. Chorak, Carl R. Ruetz, Ryan A. Thum, Charlyn Partridge, David J. Janetski, Tomas O. Höök, David F. Clapp
Software Mentions: 2
Published: over 5 years ago
10.1186/1471-2164-12-622
Comparison of measures of marker informativeness for ancestry and admixture mappingCited by: 65
Author(s): Lili Ding, Howard W. Wiener, Tilahun Abebe, Mekbib Altaye, Rodney C.P. Go, Carolyn M. Kercsmar, G.A. Grabowski, Lisa J. Martin, Gurjit K. Khurana Hershey, Ranajit Chakorborty, Tesfaye M. Baye
Software Mentions: 2
Published: almost 13 years ago
10.1186/s12862-015-0392-3
Semi-permeable species boundaries in Iberian barbels (Barbus and Luciobarbus, Cyprinidae)Cited by: 22
Author(s): Hugo F. Gante, Ignacio Doadrio, Maria Judite Alves, Thomas E. Dowling
Software Mentions: 2
Published: over 9 years ago
10.1186/1475-2875-8-75
Ecological and genetic relationships of the Forest-M form among chromosomal and molecular forms of the malaria vector Anopheles gambiae sensu strictoCited by: 37
Author(s): Lee Y, Anthony J. Cornel, Claudio Meneses, Abdrahamane Fofana, A. G. Andrianarivo, Rory D. McAbee, Étienne Fondjo, Sékou F. Traorè, Gregory C. Lanzaro
Software Mentions: 2
Published: over 15 years ago
10.1371/journal.pone.0004668
A Genome Wide Survey of SNP Variation Reveals the Genetic Structure of Sheep BreedsCited by: 279
Author(s): James W. Kijas, David Townley, Brian P. Dalrymple, Michael P. Heaton, J F Maddox, Annette McGrath, Peter Wilson, Roxann Ingersoll, Russell McCulloch, Sean McWilliam, Dave Tang, John C. McEwan, Noelle E. Cockett, V. H. Oddy, F. W. Nicholas, Herman W. Raadsma
Software Mentions: 2
Published: over 15 years ago
10.1186/s11568-014-0005-z
A genome wide pattern of population structure and admixture in peninsular Malaysia MalaysCited by: 15
Author(s): Wan Isa Hatin, Ab Rajab Nur-Shafawati, Ali Etemad, Wenfei Jin, Pengfei Qin, Shuhua Xu, Li Jin, Soon Guan Tan, Pornprot Limprasert, Merican Amir Feisal, Mohammed Rizman‐Idid, Bin Alwi Zilfalil
Software Mentions: 2
Published: about 10 years ago
10.1371/journal.pone.0114162
The World's Most Isolated and Distinct Whale Population? Humpback Whales of the Arabian SeaCited by: 38
Author(s): Cristina Pomilla, Ana Rita Amaral, Tim Collins, Gianna Minton, Ken P. Findlay, Matthew S. Leslie, Louisa S. Ponnampalam, R.M. Baldwin, Howard C. Rosenbaum
Software Mentions: 2
Published: almost 10 years ago
10.3390/genes10100779
Conservation Genetic Assessment of Savannah Elephants (Loxodonta africana) in the Greater Kruger Biosphere, South AfricaCited by: 2
Author(s): Teresa L. Santos, Carlos Fernandes, Michelle Henley, Deborah A. Dawson, Hannah S. Mumby
Software Mentions: 2
Published: about 5 years ago
10.1371/journal.pone.0029684
Straightforward Inference of Ancestry and Admixture Proportions through Ancestry-Informative Insertion Deletion MultiplexingCited by: 206
Author(s): Rui Pereira, C. Phillips, Nádia Pinto, Caroline Santos, Sidney Emanuel Batista dos Santos, António Amorim, Ángel Carracedo, Leonor Gusmão
Software Mentions: 2
Published: almost 13 years ago
10.1038/s41598-021-90937-6
Global historic pandemics caused by the FAM-1 genotype of Phytophthora infestans on six continentsCited by: 12
Author(s): Amanda Saville, Jean Beagle Ristaino
Software Mentions: 1
Published: over 3 years ago
10.1186/1475-2875-11-68
Genetic diversity and population structure of genes encoding vaccine candidate antigens of Plasmodium vivaxCited by: 44
Author(s): Stella M. Chenet, L. Lorena Tapia, Ananías A. Escalante, Salomón Durand, Carmen Lucas, David Bacon
Software Mentions: 1
Published: over 12 years ago
10.1186/s12936-018-2234-4
Decreasing proportion of Anopheles darlingi biting outdoors between long-lasting insecticidal net distributions in peri-Iquitos, Amazonian PeruCited by: 32
Author(s): Catharine Prussing, Marta Moreno, Marlon P. Saavedra, Sara A. Bickersmith, Dionicia Gamboa, Freddy Alava, Carl D. Schlichting, Kevin J. Emerson, Joseph M. Vinetz, Jan E. Conn
Software Mentions: 1
Published: almost 7 years ago
10.1186/1475-2875-11-412
Local population structure of Plasmodium: impact on malaria control and eliminationCited by: 75
Author(s): Stella M. Chenet, Kristan A. Schneider, Leopoldo Villegas, Ananías A. Escalante
Software Mentions: 1
Published: almost 12 years ago
10.1186/s12936-020-03247-z
Malaria in Venezuela: changes in the complexity of infection reflects the increment in transmission intensityCited by: 23
Author(s): M. Andreína Pacheco, David A. Forero‐Peña, Kristan A. Schneider, Melynar Chavero, Ángel F. Gamardo, Luisamy Figuera, Esha R. Kadakia, María Eugenia Grillet, Joseli Oliveira-Ferreira, Ananías A. Escalante
Software Mentions: 1
Published: over 4 years ago
10.1186/s13071-017-2201-x
Genetic diversity of Glossina fuscipes fuscipes along the shores of Lake Victoria in Tanzania and Kenya: implications for managementCited by: 5
Author(s): Oliver Manangwa, Gamba Nkwengulila, Johnson O. Ouma, Furaha Mramba, Imna Malele, Kirsten Dion, Mark Sistrom, Farrah Khan, Serap Aksoy, Adalgisa Caccone
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pntd.0007310
Limited differentiation among Plasmodium vivax populations from the northwest and to the south Pacific Coast of Colombia: A malaria corridor?Cited by: 19
Author(s): M. Andreína Pacheco, Kristan A. Schneider, Nora Céspedes, Sócrates Herrera, Myriam Arévalo‐Herrera, Ananías A. Escalante
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pntd.0004355
Multiplicity of Infection and Disease Severity in Plasmodium vivaxCited by: 44
Author(s): M. Andreína Pacheco, Mary Lopez-Perez, Andrés F. Vallejo, Myriam Arévalo‐Herrera, Ananías A. Escalante
Software Mentions: 1
Published: almost 9 years ago
10.1371/journal.pone.0166124
Molecular Epidemiology of P. vivax in Iran: High Diversity and Complex Sub-Structure Using Neutral Markers, but No Evidence of Y976F Mutation at pvmdr1Cited by: 17
Author(s): Yaghoob Hamedi, Khojasteh Sharifi‐Sarasiabi, Farzaneh Dehghan, Reza Safari, Sheren To, Irene Handayuni, Hidayat Trimarsanto, Ric N. Price, Sarah Auburn
Software Mentions: 1
Published: about 8 years ago
10.1371/journal.pone.0035601
Test of Colonisation Scenarios Reveals Complex Invasion History of the Red Tomato Spider Mite Tetranychus evansiCited by: 62
Author(s): Angham Boubou, Alain Migeon, George Roderick, Philippe Auger, Jean–Marie Cornuet, Sara Magalhães, María Navajas
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0082553
Plasmodium vivax Population Structure and Transmission Dynamics in Sabah MalaysiaCited by: 44
Author(s): Noor Rain Abdullah, Bridget E. Barber, Timothy William, Nor Azrina Norahmad, Umi Rubiah Satsu, Prem Kumar Muniandy, Zakiah Ismail, Matthew J. Grigg, Jenarun Jelip, Kim A. Piera, Lorenz von Seidlein, Tsin Wen Yeo, Nicholas M. Anstey, Ric N. Price, Sarah Auburn
Software Mentions: 1
Published: almost 11 years ago
10.1371/journal.pone.0151514
Further Evidence of Increasing Diversity of Plasmodium vivax in the Republic of Korea in Recent YearsCited by: 13
Author(s): Jung-Yeon Kim, Youn‐Kyoung Goo, Young-Gun Zo, So‐Young Ji, Hidayat Trimarsanto, Sheren To, Taane G. Clark, Ric N. Price, Sarah Auburn
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0165430
Hybrid Origins of Carex rostrata var. borealis and C. stenolepis, Two Problematic Taxa in Carex Section Vesicariae (Cyperaceae)Cited by: 6
Author(s): A. Tiril M. Pedersen, Michael Nowak, Anne K. Brysting, Reidar Elven, Charlotte Sletten Bjorå
Software Mentions: 1
Published: about 8 years ago
10.1371/journal.pone.0161971
Patterns of Gene Flow between Crop and Wild Carrot, Daucus carota (Apiaceae) in the United StatesCited by: 14
Author(s): Jennifer R. Mandel, Adam J. Ramsey, Massimo Iorizzo, Philipp W. Simon
Software Mentions: 1
Published: about 8 years ago
10.1002/ece3.2212
Cyto‐nuclear discordance suggests complex evolutionary history in the cave‐dwelling salamander, E urycea lucifugaCited by: 5
Author(s): Hilary A. Edgington, Colleen M. Ingram, Douglas R. Taylor
Software Mentions: 1
Published: over 8 years ago
10.1002/ece3.3767
Introgression of exotic <i>Cervus</i> (<i>nippon</i> and <i>canadensis</i>) into red deer (<i>Cervus elaphus</i>) populations in Scotland and the English Lake DistrictCited by: 29
Author(s): Stephanie L. Smith, Helen Senn, Sílvia Pérez‐Espona, Megan T. Wyman, Elizabeth Heap, Josephine M. Pemberton
Software Mentions: 1
Published: almost 7 years ago
10.1111/eva.12416
Ancestry and adaptive evolution of anadromous, resident, and adfluvial rainbow trout (<i>Oncorhynchus mykiss</i>) in the San Francisco bay area: application of adaptive genomic variation to conservation in a highly impacted landscapeCited by: 55
Author(s): Maëva Leitwein, John Carlos Garza, Devon E. Pearse
Software Mentions: 1
Published: about 8 years ago
10.3389/fgene.2013.00098
An overview of STRUCTURE: applications, parameter settings, and supporting softwareCited by: 379
Author(s): Liliana Porras-Hurtado, Y. Ruiz, C. Santos, C. Phillips, Ángel Carracedo, Marı́a Victoria Lareu
Software Mentions: 1
Published: almost 12 years ago
10.1534/g3.120.400886
Long-Term Reciprocal Gene Flow in Wild and Domestic Geese Reveals Complex Domestication HistoryCited by: 12
Author(s): Markku Heikkinen, Minna Ruokonen, Thomas A. White, Michelle Alexander, İslam Gündüz, Keith Dobney, Jouni Aspi, Jeremy B. Searle, Tanja Pyhäjärvi
Software Mentions: 1
Published: about 4 years ago
10.1016/j.ygeno.2021.07.003
An evaluation of the species and subspecies of the genus Salmonella with whole genome sequence data: Proposal of type strains and epithets for novel S. enterica subspecies VII, VIII, IX, X and XICited by: 17
Author(s): Madison E. Pearce, Gemma Langridge, Ana C. Lauer, Kathie Grant, Martin Maiden, Marie Anne Chattaway
Software Mentions: 1
Published: about 3 years ago