pypi: Evolve | Projects | Ecosyste.ms: Papers

10.3389/fninf.2014.00076

Limits to high-speed simulations of spiking neural networks using general-purpose computers
Cited by: 50
Author(s): Friedemann Zenke, Wulfram Gerstner
Software Mentions: 5
Published: about 10 years ago

10.1093/gbe/evab154

Fine Mapping without Phenotyping: Identification of Selection Targets in Secondary Evolve and Resequence Experiments
Cited by: 3
Author(s): Anna Maria Langmüller, Marlies Dolezal, Christian Schlötterer
Software Mentions: 4
Published: over 3 years ago

10.1038/s41389-019-0159-6

EPHA2 mutations with oncogenic characteristics in squamous cell lung cancer and malignant pleural mesothelioma
Cited by: 18
Author(s): Yulong Tan, Saumya Srivastava, Brian Won, Rajani Kanteti, Qudsia Arif, Aliya N. Husain, Hubert Li, Wickii T. Vigneswaran, Ka Ming Pang, Prakash Kulkarni, Martin Sattler, Nagarajan Vaidehi, Isa Mambetsariev, Hedy L. Kindler, Deric L. Wheeler, Ravi Salgia
Software Mentions: 2
Published: about 5 years ago

10.1002/2211-5463.12516

Reduced colonic mucin degradation in breastfed infants colonized by Bifidobacterium longum subsp . infantis EVC001
Cited by: 36
Author(s): Sercan Karav, Giorgio Casaburi, Steven A. Frese
Software Mentions: 2
Published: about 6 years ago

10.7554/eLife.54216

Competition between kinesin-1 and myosin-V defines Drosophila posterior determination
Cited by: 33
Author(s): Wen Lü, Margot Lakonishok, Rong Liu, Neil Billington, Ashley Rich, Michael Glotzer, James R. Sellers, Vladimir I. Gelfand
Software Mentions: 2
Published: almost 5 years ago

10.7554/eLife.51185

Apolipoprotein L-1 renal risk variants form active channels at the plasma membrane driving cytotoxicity
Cited by: 36
Author(s): Joseph GIovinazzo, Russell Thomson, Nailya Khalizova, Patrick J. Zager, Nirav Malani, Enrique Rodríguez-Boulan, Jayne Raper, Ryan Schreiner
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-018-26840-4

Combinatorial Drug Testing in 3D Microtumors Derived from GBM Patient-Derived Xenografts Reveals Cytotoxic Synergy in Pharmacokinomics-informed Pathway Interactions
Cited by: 11
Author(s): Ashley Gilbert, Joshua C. Anderson, Christine W. Duarte, Rachael Shevin, Catherine P. Langford, Rajesh Kumar Singh, G. Yancey Gillespie, Christopher D. Willey
Software Mentions: 2
Published: over 6 years ago

10.7717/peerj.3639

A systematic review of differential rate of use of the word “evolve” across fields
Cited by: 0
Author(s): Nina Singh, Matthew T. Sit, Marissa K. Schutte, Gabriel E. Chan, Jeyson E. Aldana, Diana Cervantes, Clyde H. Himmelstein, Pamela J. Yeh
Software Mentions: 2
Published: over 7 years ago

10.3389/fpls.2015.00545

QueTAL: a suite of tools to classify and compare TAL effectors functionally and phylogenetically
Cited by: 33
Author(s): Álvaro L. Pérez‐Quintero, Léo Lamy, Jonathan Gordon, Aline Escalon, Sébastien Cunnac, Boris Szurek, Lionel Gagnevin
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-020-80583-9

Metagenomic insights of the infant microbiome community structure and function across multiple sites in the United States
Cited by: 32
Author(s): Giorgio Casaburi, Rebbeca M. Duar, Heather K. Brown, Ryan D. Mitchell, Sufyan Kazi, Stephanie Chew, Orla Cagney, Robin L. Flannery, Karl G. Sylvester, Steven A. Frese, Bethany M. Henrick, Sara M. Freeman
Software Mentions: 2
Published: almost 4 years ago

10.1093/gbe/evz082

DNA Motifs Are Not General Predictors of Recombination in Two Drosophila Sister Species
Cited by: 22
Author(s): James Malcolm Howie, Rupert Mazzucco, Thomas Taus, Viola Nolte, Christian Schlötterer
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pgen.1006339

High-Throughput Identification of Adaptive Mutations in Experimentally Evolved Yeast Populations
Cited by: 71
Author(s): Célia Payen, Anna B. Sunshine, Giang T. Ong, Jamie L. Pogachar, Wei Zhao, Maitreya J. Dunham
Software Mentions: 2
Published: about 8 years ago

10.3389/fmed.2021.713312

Topical Application of the PI3Kβ-Selective Small Molecule Inhibitor TGX-221 Is an Effective Treatment Option for Experimental Epidermolysis Bullosa Acquisita
Cited by: 4
Author(s): Hannah Zillikens, Anika Kasprick, Colin Osterloh, Natalie Gross, Michael Radziewitz, Cindy Hass, Veronika Hartmann, Martina Behnen-Härer, Nancy Ernst, Katharina Boch, Gestur Vidarsson, Remco Visser, Tamás Laskay, Xinhua Yu, Frank Petersen, Ralf J. Ludwig, Katja Bieber
Software Mentions: 2
Published: about 3 years ago

10.3390/antibiotics10050486

Treatment of Pulmonary Disease of Cystic Fibrosis: A Comprehensive Review
Cited by: 12
Author(s): Rosa María Girón Moreno, Marta García‐Clemente, Layla Diab-Cáceres, Adrián Martínez-Vergara, Miguel Ángel Martínez‐García, Rosa Mar Gómez-Punter
Software Mentions: 2
Published: over 3 years ago

10.1038/s41388-020-1208-5

EGFRvIII upregulates DNA mismatch repair resulting in increased temozolomide sensitivity of MGMT promoter methylated glioblastoma
Cited by: 39
Author(s): Nina Struve, Zev A. Binder, Lucy F. Stead, Tim Brend, Stephen Bagley, Claire Faulkner, Leonie Ott, Justus Müller-Goebel, Anna-Sophie Weik, Konstantin Hoffer, L Krug, Thorsten Rieckmann, Lara Bußmann, Marvin Henze, Jennifer J.D. Morrissette, Kathreena M. Kurian, Ulrich Schüller, Cordula Petersen, Kai Rothkamm, Donald M O Rourke, Susan Short, Malte Kriegs
Software Mentions: 2
Published: almost 5 years ago

10.3390/cancers12030583

Pan Aurora Kinase Inhibitor: A Promising Targeted-Therapy in Dedifferentiated Liposarcomas With Differential Efficiency Depending on Sarcoma Molecular Profile
Cited by: 8
Author(s): Jean Camille Mattei, Corinne Bouvier‐Labit, Doriane Barets, Nicolas Macagno, Mathieu Chocry, Frédéric Chibon, Philippe Morando, Richard Alexandre Rochwerger, Florence Duffaud, Sylviane Olschwang, Sébastien Salas, Carine Jiguet-Jiglaire
Software Mentions: 1
Published: over 4 years ago

10.3390/cancers13040826

Targeting of CXCR4 by the Naturally Occurring CXCR4 Antagonist EPI-X4 in Waldenström’s Macroglobulinemia
Cited by: 12
Author(s): Lisa Kaiser, Mirja Harms, Daniel Sauter, Vijay P.S. Rawat, Mirco Glitscher, Eberhard Hildt, Daniel Tews, Zachary Hunter, Jan Münch, Christian Buske
Software Mentions: 1
Published: almost 4 years ago

10.3390/cancers11060762

Differential Kinase Activation in Peripheral Blood Mononuclear Cells from Non-Small-Cell Lung Cancer Patients Treated with Nivolumab
Cited by: 4
Author(s): Gaëlle Noé, Audrey Bellesœur, Lisa Golmard, Audrey Thomas-Schoemann, Pascaline Boudou‐Rouquette, Manuela Tiako Meyo, Alicja Puszkiel, Jennifer Arrondeau, Jérôme Alexandre, François Goldwasser, Benoı̂t Blanchet, Michel Vidal
Software Mentions: 1
Published: over 5 years ago

10.3390/cancers12061607

Overcoming Platinum and PARP-Inhibitor Resistance in Ovarian Cancer
Cited by: 94
Author(s): Michelle McMullen, Katherine Karakasis, Ainhoa Madariaga, Amit M. Oza
Software Mentions: 1
Published: over 4 years ago

10.3390/cells10020430

Knockdown of AKT3 Activates HER2 and DDR Kinases in Bone-Seeking Breast Cancer Cells, Promotes Metastasis In Vivo and Attenuates the TGFβ/CTGF Axis
Cited by: 11
Author(s): Nico Hinz, Anke Baranowsky, Michael P. Horn, Malte Kriegs, Freya Sibbertsen, Daniel J Smit, Philippe Clézardin, Tobias Lange, Thorsten Schinke, Manfred Jücker
Software Mentions: 1
Published: almost 4 years ago

10.1111/eva.12149

Using genomics to characterize evolutionary potential for conservation of wild populations
Cited by: 199
Author(s): Katherine A. Harrisson, Alexandra Pavlova, Marina Telonis‐Scott, Paul Sunnucks
Software Mentions: 1
Published: over 10 years ago

10.3389/fcell.2019.00382

Precise Personalized Medicine in Gynecology Cancer and Infertility
Cited by: 11
Author(s): Pu-Yao Zhang, Yuanzheng Yang
Software Mentions: 1
Published: almost 5 years ago

10.3389/fimmu.2019.00482

TLR10 Senses HIV-1 Proteins and Significantly Enhances HIV-1 Infection
Cited by: 60
Author(s): Bethany M. Henrick, Xiao‐Dan Yao, Muhammad Atif Zahoor, Alash’le Abimiku, Sophia Osawe, Kenneth L. Rosenthal
Software Mentions: 1
Published: over 5 years ago

10.3389/fninf.2013.00035

An efficient, scalable, and adaptable framework for solving generic systems of level-set PDEs
Cited by: 4
Author(s): Kishore Mosaliganti, Arnaud Gelas, Sean G. Megason
Software Mentions: 1
Published: almost 12 years ago

10.3389/fnut.2021.651721

Bovine Colostrum and Its Potential for Human Health and Nutrition
Cited by: 45
Author(s): Ayşenur Arslan, Merve Kaplan, Hatice Duman, Ayşe Bayraktar, Melih Ertürk, Bethany M. Henrick, Steven A. Frese, Sercan Karav
Software Mentions: 1
Published: over 3 years ago

10.1186/1742-4690-7-105

Two distinct variants of simian foamy virus in naturally infected mandrills (Mandrillus sphinx)and cross-species transmission to humans
Cited by: 32
Author(s): Augustin Mouinga‐Ondémé, Edouard Betsem, Mélanie Caron, Maria Makuwa, Bettina Sallé, Noémie Renault, Ali Saı̈b, Paul Telfer, Preston A. Marx, Antoine Gessain, Mirdad Kazanji
Software Mentions: 1
Published: almost 14 years ago

10.1186/s13049-019-0639-x

Meeting Abstracts: London Trauma Conference, London Cardiac Arrest Symposium, London Pre-hospital Care Conference 2018
Cited by: 0
Author(s):
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-017-09078-4

Differential responsiveness of MET inhibition in non-small-cell lung cancer with altered CBL
Cited by: 13
Author(s): Yulong Tan, Tamara Mirzapoiazova, Brian Won, Li Zhu, Minu K. Srivastava, Everett E. Vokes, Aliya N. Husain, Surinder K. Batra, Sherven Sharma, Ravi Salgia
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-11223-y

Lattice light sheet imaging of membrane nanotubes between human breast cancer cells in culture and in brain metastases
Cited by: 16
Author(s): Ian Parker, Katrina Evans, Kyle L. Ellefsen, Devon A. Lawson, Ian F. Smith
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-020-57676-6

Profiling of human lymphocytes reveals a specific network of protein kinases modulated by endurance training status
Cited by: 15
Author(s): Katharina Alack, Astrid Weiß, Karsten Krüger, Mona Höret, Ralph T. Schermuly, Torsten Frech, Martin Eggert, Frank-Christoph Mooren
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-69751-z

Marine alkaloid monanchoxymycalin C: a new specific activator of JNK1/2 kinase with anticancer properties
Cited by: 8
Author(s): Sergey A. Dyshlovoy, Moritz Kaune, Malte Kriegs, Jessica Hauschild, Tobias Busenbender, Larisa K. Shubina, Tatyana N. Makarieva, Konstantin Hoffer, Carsten Bokemeyer, Markus Graefen, Valentin A. Stonik, Gunhild von Amsberg
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-021-90391-4

Author Correction: Metagenomic insights of the infant microbiome community structure and function across multiple sites in the United States
Cited by: 1
Author(s): Giorgio Casaburi, Rebbeca M. Duar, Heather K. Brown, Ryan D. Mitchell, Sufyan Kazi, Stephanie Chew, Orla Cagney, Robin L. Flannery, Karl G. Sylvester, Steven A. Frese, Bethany M. Henrick, Sara M. Freeman
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-021-97188-5

A life cycle assessment of reprocessing face masks during the Covid-19 pandemic
Cited by: 29
Author(s): Bart van Straten, Sharina Ligtelijn, L.Y.A. Droog, Esther Putman, Jenny Dankelman, Nicolaas H. Sperna Weiland, Tim Horeman
Software Mentions: 1
Published: about 3 years ago

10.3390/s150613778

Solving Energy-Aware Real-Time Tasks Scheduling Problem with Shuffled Frog Leaping Algorithm on Heterogeneous Platforms
Cited by: 27
Author(s): Weizhe Zhang, Enci Bai, Hui He, Albert M. K. Cheng
Software Mentions: 1
Published: over 9 years ago

10.1128/mSystems.00166-17

Vive la Persistence: Engineering Human Microbiomes in the 21st Century
Cited by: 2
Author(s): Katrine Whiteson
Software Mentions: 1
Published: over 6 years ago

10.1155/2019/3598123

Neurodisability with Severe Restriction of Mobility Is Associated with Reduced Serum Creatinine Values
Cited by: 0
Author(s): Chun Geun Lim, M. J. Phillips, Liam Watson, Michael Eisenhut
Software Mentions: 1
Published: over 5 years ago

10.1515/jib-2019-0070

A Lock Free Approach To Parallelize The Cellular Potts Model: Application To Ductal Carcinoma In Situ
Cited by: 3
Author(s): Antonio J. Tomeu, Alberto Salguero
Software Mentions: 1
Published: over 4 years ago

10.3390/ijms21228679

Kinome Array Profiling of Patient-Derived Pancreatic Ductal Adenocarcinoma Identifies Differentially Active Protein Tyrosine Kinases
Cited by: 21
Author(s): Justin Creeden, Khaled Alganem, Ali Sajid Imami, F. Charles Brunicardi, Shi‐He Liu, Rammohan Shukla, Tushar Tomar, Faris Naji, Robert E. McCullumsmith
Software Mentions: 1
Published: about 4 years ago

10.3390/ijms22031502

Therapeutic Potential of Regorafenib—A Multikinase Inhibitor in Pulmonary Hypertension
Cited by: 4
Author(s): Swathi Veeroju, Baktybek Kojonazarov, Astrid Weiß, Hossein Ardeschir Ghofrani, Norbert Weißmann, Friedrich Grimminger, Werner Seeger, Tatyana Novoyatleva, Ralph T. Schermuly
Software Mentions: 1
Published: almost 4 years ago

10.3390/ijms22189939

Microcystin-LR (MC-LR) Triggers Inflammatory Responses in Macrophages
Cited by: 4
Author(s): Robin C. Su, Joshua D. Breidenbach, Khaled Alganem, Fatimah K. Khalaf, Benjamin W. French, Prabhatchandra Dube, Deepak Malhotra, Robert E. McCullumsmith, John B. Presloid, R. Mark Wooten, David J. Kennedy, Steven T. Haller
Software Mentions: 1
Published: about 3 years ago

10.1007/s40620-020-00715-2

Fibroblast growth factor 23: are we ready to use it in clinical practice?
Cited by: 21
Author(s): Annet Bouma-de Krijger, Marc G. Vervloet
Software Mentions: 1
Published: over 4 years ago

10.1186/s13048-018-0385-0

Sialylation of EGFR by the ST6Gal-I sialyltransferase promotes EGFR activation and resistance to gefitinib-mediated cell death
Cited by: 81
Author(s): Colleen M. Britain, Andrew T. Holdbrooks, Joshua C. Anderson, Christopher D. Willey, Susan L. Bellis
Software Mentions: 1
Published: almost 7 years ago

10.18632/oncotarget.11686

Clinical and kinomic analysis identifies peripheral blood mononuclear cells as a potential pharmacodynamic biomarker in metastatic renal cell carcinoma patients treated with sunitinib
Cited by: 12
Author(s): Gaëlle Noé, Audrey Bellesœur, Audrey Thomas-Schoemann, Savithri Rangarajan, Faris Naji, Alicja Puszkiel, Olivier Huillard, Nathaniel Edward Bennett Saidu, Lisa Golmard, Jérôme Alexandre, François Goldwasser, Benoı̂t Blanchet, Michel Vidal
Software Mentions: 1
Published: about 8 years ago

10.18632/oncotarget.16352

Kinomic profiling identifies focal adhesion kinase 1 as a therapeutic target in advanced clear cell renal cell carcinoma
Cited by: 10
Author(s): Arindam Ghosh, Christopher D. Willey, Joshua C. Anderson, Karim Welaya, Dongquan Chen, Amitkumar Mehta, Pooja Ghatalia, Ankit Madan, Gurudatta Naik, Sunil Sudarshan, Guru Sonpavde
Software Mentions: 1
Published: over 7 years ago

10.18632/oncotarget.22764

Coregulator profiling of the glucocorticoid receptor in lymphoid malignancies
Cited by: 13
Author(s): Dorien Clarisse, Jonathan Thommis, Karlien Van Wesemael, René Houtman, Dariusz Ratman, Jan Tavernier, Fritz Offner, Ilse Beck, Karolien De Bosscher
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41405-020-00044-3

Analysis of the critical dose of radiation therapy in the incidence of Osteoradionecrosis in head and neck cancer patients: a case series
Cited by: 9
Author(s): Zain Iqbal, Panayiotis A. Kyzas
Software Mentions: 1
Published: about 4 years ago

10.1186/1471-2105-9-541

GeNESiS: gene network evolution simulation software
Cited by: 10
Author(s): Anton Kratz, Masaru Tomita, Arun V. Krishnan
Software Mentions: 1
Published: almost 16 years ago

10.1186/s12885-018-4712-z

Rational development of synergistic combinations of chemotherapy and molecular targeted agents for colorectal cancer treatment
Cited by: 14
Author(s): Diego Tosi, Esther Pérez-Gracia, Salima Atis, Nadia Vié, Eve Combès, Mélissa Gabanou, Christel Larbouret, Marta Jarlier, Caroline Mollévi, Adeline Torro, Maguy Del Rio, Pierre Martineau, Céline Gongora
Software Mentions: 1
Published: over 6 years ago

10.1186/s12885-016-2600-y

Pro-survival responses to the dual inhibition of anti-apoptotic Bcl-2 family proteins and mTOR-mediated signaling in hypoxic colorectal carcinoma cells
Cited by: 6
Author(s): Karianne Risberg, Kathrine Røe Redalen, Linda Sønstevold, Tonje Bjørnetrø, Janne Sølvernes, Anne Hansen Ree
Software Mentions: 1
Published: over 8 years ago

10.1186/s12887-017-0886-9

Safety and tolerability of Bifidobacterium longum subspecies infantis EVC001 supplementation in healthy term breastfed infants: a phase I clinical trial
Cited by: 37
Author(s): Jennifer T. Smilowitz, Jackelyn Moya, Melissa A. Breck, Chelsea Cook, Annette Fineberg, Kathleen Angkustsiri, Mark A. Underwood
Software Mentions: 1
Published: over 7 years ago

10.1186/s12918-017-0439-8

Gene expression profiles and signaling mechanisms in α2B-adrenoceptor-evoked proliferation of vascular smooth muscle cells
Cited by: 14
Author(s): Anna Huhtinen, Vesa Hongisto, Asta Laiho, Eliisa Löyttyniemi, Dirk Pijnenburg, Mika Scheinin
Software Mentions: 1
Published: over 7 years ago

10.1002/mrc.4642

SpinDynamica: Symbolic and numerical magnetic resonance in a Mathematica environment
Cited by: 90
Author(s): Christian Bengs, Malcolm H. Levitt
Software Mentions: 1
Published: about 7 years ago

10.1111/mcn.12914

Neonatal weight loss and gain patterns in caesarean section born infants: integrative systematic review
Cited by: 10
Author(s): Niamh Kelly, Jessica V. Keane, Rachel Gallimore, Debra Bick, Rachel M. Tribe
Software Mentions: 1
Published: almost 5 years ago

10.1093/molbev/msv136

Whole-Genome Resequencing of Experimental Populations Reveals Polygenic Basis of Egg-Size Variation inDrosophila melanogaster
Cited by: 67
Author(s): Aashish R. Jha, Cecelia M. Miles, Nodia R. Lippert, Christopher D. Brown, Kevin P. White, Martin Kreitman
Software Mentions: 1
Published: over 9 years ago

10.1186/s13041-021-00786-7

Activation of acid‐sensing ion channels by carbon dioxide regulates amygdala synaptic protein degradation in memory reconsolidation
Cited by: 4
Author(s): Boren Lin, Khaled Alganem, Sinead M. O’Donovan, Zhixin Jin, Farzaneh Sadat Naghavi, Olivia A. Miller, Tyler C Ortyl, Ye Chun Ruan, Robert E. McCullumsmith, Jianyang Du
Software Mentions: 1
Published: over 3 years ago

10.1111/mec.14992

Shifting the paradigm in Evolve and Resequence studies: From analysis of single nucleotide polymorphisms to selected haplotype blocks
Cited by: 17
Author(s): Neda Barghi, Christian Schlötterer
Software Mentions: 1
Published: almost 6 years ago

10.1097/pq9.0000000000000247

Use of a Pediatric Admission Booklet Significantly Improves the Comprehensiveness of Admission Documentation: A Quality Improvement Project
Cited by: 1
Author(s): Andrew Beverstock, Carianne Lewis, David Bruce, James R. Barnes, Alison Kelly
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0139267

High Throughput Kinomic Profiling of Human Clear Cell Renal Cell Carcinoma Identifies Kinase Activity Dependent Molecular Subtypes
Cited by: 33
Author(s): Joshua C. Anderson, Christopher D. Willey, Amitkumar Mehta, Karim Welaya, Dongquan Chen, Christine W. Duarte, Pooja Ghatalia, Waleed Arafat, Ankit Madan, Sunil Sudarshan, Gurudatta Naik, William E. Grizzle, Toni K. Choueiri, Guru Sonpavde
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0181912

Large-scale reduction of tyrosine kinase activities in human monocytes stimulated in vitro with N. meningitidis
Cited by: 2
Author(s): Unni Gopinathan, Kathrine Røe Redalen, Anne-Marie Siebke Trøseid, Peter Kierulf, Petter Brandtzæg, Anne Hansen Ree, Jens Petter Berg, Reidun Øvstebø
Software Mentions: 1
Published: almost 7 years ago

Projects: pypi: Evolve

Papers Mentioning Evolve 59