pypi: lmfit | Projects | Ecosyste.ms: Papers

10.3389/fninf.2016.00008

PyRhO: A Multiscale Optogenetics Simulation Platform
Cited by: 20
Author(s): Benjamin D. Evans, Sarah Jarvis, Simon R. Schultz, Konstantin Nikolić
Software Mentions: 9
Published: almost 9 years ago

Maternal diabetes and obesity influence the fetal epigenome in a largely Hispanic population
Cited by: 18
Author(s): Heather E. Rizzo, Elia N. Escaname, Nicholas B. Alana, Elizabeth Lavender, Jonathan Gelfond, Roman Fernandez, Matthew A. Hibbs, Julie King, Nicholas Carr, Cynthia L. Blanco
Software Mentions: 9
Published: almost 5 years ago

10.1084/jem.20201833

ADAR and hnRNPC deficiency synergize in activating endogenous dsRNA-induced type I IFN responses
Cited by: 7
Author(s): Anna‐Maria Herzner, Zia Khan, Eric L. Van Nostrand, Sara M. Chan, Trinna Cuellar, Ronald Chen, Ximo Pechuan-Jorge, László G. Kömüves, Margaret Solon, Zora Modrušan, Benjamin Haley, G Yeo, Timothy W. Behrens, Matthew L. Albert
Software Mentions: 8
Published: over 3 years ago

10.1371/journal.pgen.1009385

Split versions of Cleave and Rescue selfish genetic elements for measured self limiting gene drive
Cited by: 19
Author(s): Georg Oberhofer, Tobin Ivy, Bruce A. Hay
Software Mentions: 7
Published: almost 4 years ago

10.1002/jcsm.12556

An epigenetic clock for human skeletal muscle
Cited by: 58
Author(s): Sarah Voisin, Nicholas R. Harvey, Larisa M. Haupt, Lyn R. Griffiths, Kevin J. Ashton, Vernon G. Coffey, Thomas Doering, Jamie-Lee M Thompson, Christian Benedict, Jonathan Cedernaes, Maléne E. Lindholm, Jeffrey M. Craig, David S. Rowlands, Adam P. Sharples, Steve Horvath, Nir Eynon
Software Mentions: 7
Published: almost 5 years ago

10.1186/s13058-019-1098-z

A subgroup of microRNAs defines PTEN-deficient, triple-negative breast cancer patients with poorest prognosis and alterations in RB1, MYC, and Wnt signaling
Cited by: 33
Author(s): Dong‐Yu Wang, Deena M.A. Gendoo, Yaacov Ben‐David, James R. Woodgett, Eldad Zacksenhaus
Software Mentions: 6
Published: almost 6 years ago

10.1371/journal.pone.0160716

FRETBursts: An Open Source Toolkit for Analysis of Freely-Diffusing Single-Molecule FRET
Cited by: 59
Author(s): Antonino Ingargiola, Eitan Lerner, SangYoon Chung, Shimon Weiss, Xavier Michalet
Software Mentions: 6
Published: over 8 years ago

10.1107/S2052252517006212

Healing X-ray scattering images
Cited by: 10
Author(s): Jiliang Liu, Julien Lhermitte, Ye Tian, Zheng Zhang, D. Yu, Kevin G. Yager
Software Mentions: 5
Published: over 7 years ago

10.1038/s41598-021-82067-w

Calcium calmodulin kinase II activity is required for cartilage homeostasis in osteoarthritis
Cited by: 11
Author(s): Giovanna Nalesso, Anne‐Sophie Thorup, S. Eldridge, Armando M. De Palma, Amanpreet Kaur, Kiran Peddireddi, Kevin Blighe, Sharmila Rana, B. Stott, Tonia L. Vincent, B.L. Thomas, Jessica Bertrand, J. Sherwood, Antonella Fioravanti, Costantino Pitzalis, Francesco Dell’Accio
Software Mentions: 5
Published: almost 4 years ago

10.1038/s41598-020-61649-0

Epigenome-wide association study for perceived discrimination among sub-Saharan African migrants in Europe - the RODAM study
Cited by: 6
Author(s): Loes C. van der Laan, Karlijn Meeks, Felix P Chilunga, Charles Agyemang, Andrea Venema, Marcel M.A.M. Mannens, Mohammad Hadi Zafarmand, Kerstin Klipstein‐Grobusch, Liam Smeeth, Adebowale Adeyemo, Peter Henneman
Software Mentions: 5
Published: almost 5 years ago

10.7554/eLife.43415

Precise excitation-inhibition balance controls gain and timing in the hippocampus
Cited by: 67
Author(s): Aanchal Bhatia, Sahil Moza, Upinder S. Bhalla
Software Mentions: 5
Published: over 5 years ago

10.3390/jpm7020003

Accuracy in Wrist-Worn, Sensor-Based Measurements of Heart Rate and Energy Expenditure in a Diverse Cohort
Cited by: 402
Author(s): Anna Shcherbina, C. Mikael Mattsson, Daryl Waggott, Heidi Salisbury, Jeffrey W. Christle, Trevor Hastie, Matthew T. Wheeler, Euan A. Ashley
Software Mentions: 5
Published: over 7 years ago

10.15252/msb.20167456

A photoconversion model for full spectral programming and multiplexing of optogenetic systems
Cited by: 29
Author(s): Evan J. Olson, Constantine N. Tzouanas, Jeffrey J. Tabor
Software Mentions: 4
Published: over 7 years ago

10.1186/s12935-020-01281-0

Long noncoding RNAs as potential biomarkers in retinoblastoma: a systematic review and meta-analysis
Cited by: 8
Author(s): Jiali Wu, Dashi Qian, Xiaodong Sun
Software Mentions: 4
Published: over 4 years ago

10.1016/j.ymeth.2017.09.010

Optimized processing and analysis of conventional confocal microscopy generated scanning FCS data
Cited by: 30
Author(s): Dominic Waithe, Falk Schneider, Jakub Chojnacki, Mathias P. Clausen, Dilip Shrestha, Jorge Bernardino de la Serna, Christian Eggeling
Software Mentions: 4
Published: over 6 years ago

10.3390/molecules24142557

Systematic Assessment of Burst Impurity in Confocal-Based Single-Molecule Fluorescence Detection Using Brownian Motion Simulations
Cited by: 10
Author(s): Dolev Hagai, Eitan Lerner
Software Mentions: 4
Published: over 5 years ago

10.3389/fneur.2020.00370

Dopamine Buffering Capacity Imaging: A Pharmacodynamic fMRI Method for Staging Parkinson Disease
Cited by: 5
Author(s): Kevin J. Black, Haley Acevedo, Jonathan M. Koller
Software Mentions: 4
Published: over 4 years ago

10.1107/S1600576718009500

Serial electron crystallography for structure determination and phase analysis of nanocrystalline materials
Cited by: 45
Author(s): Stef Smeets, Xiaodong Zou, Wei Wan
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0237304

A fractal kinetics SI model can explain the dynamics of COVID-19 epidemics
Cited by: 13
Author(s): Kosmas Kosmidis, Panos Macheras
Software Mentions: 3
Published: over 4 years ago

10.1186/s12859-020-3513-y

ICEKAT: an interactive online tool for calculating initial rates from continuous enzyme kinetic traces
Cited by: 25
Author(s): Michael D. Olp, Kelsey S. Kalous, Brian C. Smith
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0194938

Widespread domain-like perturbations of DNA methylation in whole blood of Down syndrome neonates
Cited by: 22
Author(s): Peter Henneman, Arjan Bouman, Adri N. Mul, Lia Knegt, Anne-Marie van der Kevie-Kersemaekers, Nitash Zwaveling-Soonawala, Hanne Meijers-Heijboer, A S Paul van Trotsenburg, Marcel M.A.M. Mannens
Software Mentions: 3
Published: over 6 years ago

10.1186/s12864-015-2169-x

Genome-wide mapping of Hif-1α binding sites in zebrafish
Cited by: 29
Author(s): David Greenald, Justin Jeyakani, Bernd Pelster, Ian Sealy, Sinnakaruppan Mathavan, Fredericus J. van Eeden
Software Mentions: 3
Published: about 9 years ago

10.3389/fcell.2020.602493

The Identification of Plasma Exosomal miR-423-3p as a Potential Predictive Biomarker for Prostate Cancer Castration-Resistance Development by Plasma Exosomal miRNA Sequencing
Cited by: 29
Author(s): Tianyu Guo, Yang Wang, Jing Jia, Xueying Mao, Elżbieta Stankiewicz, Glenda Scandura, Edwina Burke, Lei Xu, Jacek Marzec, Caitlin R. Davies, Jiaying Lu, Prabhakar Rajan, Alistair Grey, K. H. Tipples, John Hines, Sakunthala C. Kudahetti, Tim Oliver, Thomas Powles, Constantine Alifrangis, Manish Kohli, Greg Shaw, Wen Wang, Na Feng, Jonathan Shamash, Daniel M. Berney, Liang Wang, Yong‐Jie Lu
Software Mentions: 3
Published: almost 4 years ago

10.1038/s41598-020-60768-y

Complex approach for analysis of snake venom α-neurotoxins binding to HAP, the high-affinity peptide
Cited by: 9
Author(s): Denis S. Kudryavtsev, Valentin М. Tabakmakher, Gleb S. Budylin, N. S. Egorova, Roman G. Efremov, Igor A. Ivanov, Svetlana Yu. Belukhina, Artjom V. Jegorov, Igor E. Kasheverov, Elena V. Kryukova, Irina V. Shelukhina, Evgeny A. Shirshin, Nadezhda G. Zhdanova, Maxim N. Zhmak, Victor I. Tsetlin
Software Mentions: 3
Published: almost 5 years ago

10.1111/ppl.13086

Blue light induces major changes in the gene expression profile of the cyanobacterium<scp><i>Synechocystis</i></scp>sp. PCC 6803
Cited by: 14
Author(s): Veerle M. Luimstra, J. Merijn Schuurmans, Klaas J. Hellingwerf, H.C.P. Matthijs, Jef Huisman
Software Mentions: 3
Published: almost 5 years ago

10.3390/ijms22063129

Functional Characterisation of Three Glycine N-Acyltransferase Variants and the Effect on Glycine Conjugation to Benzoyl–CoA
Cited by: 3
Author(s): Johann M. Rohwer, Chantelle Schutte, Rencia van der Sluis
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0135426

MCF-7 Human Breast Cancer Cells Form Differentiated Microtissues in Scaffold-Free Hydrogels
Cited by: 62
Author(s): Marguerite M. Vantangoli, Samantha J. Madnick, Susan M. Huse, Paula Weston, Kim Boekelheide
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0252019

Dynamical SPQEIR model assesses the effectiveness of non-pharmaceutical interventions against COVID-19 epidemic outbreaks
Cited by: 8
Author(s): Daniele Proverbio, Françoise Kemp, Stefano Magni, Andreas Husch, Atte Aalto, Laurent Mombaerts, Alexander Skupin, Jorge Gonçalves, Jose Ameijeiras–Alonso, Christophe Ley
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0245771

Association between population distribution and urban GDP scaling
Cited by: 15
Author(s): Haroldo V. Ribeiro, Milena Oehlers, Ana I. Moreno-Monroy, Jürgen P. Kropp, Diego Rybski
Software Mentions: 2
Published: almost 4 years ago

10.3390/s21186170

Accurate Reference Gas Mixtures Containing Tritiated Molecules: Their Production and Raman-Based Analysis
Cited by: 5
Author(s): S. Niemes, Helmut H. Telle, B. Bornschein, Lucian Fasselt, Robin Größle, F. Priester, M. Schlösser, M. Sturm, S. Welte, G. P. Zeller
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0134474

Deconvolution of Complex 1D NMR Spectra Using Objective Model Selection
Cited by: 15
Author(s): Travis S. Hughes, Henry D. Wilson, Ian Mitchelle S. de Vera, D.J. Kojetin
Software Mentions: 2
Published: over 9 years ago

10.3390/ma9080649

The Sulphur Poisoning Behaviour of Gadolinia Doped Ceria Model Systems in Reducing Atmospheres
Cited by: 21
Author(s): Matthias P. Gerstl, Andreas Nenning, Riza Iskandar, Veronika A. Rojek-Wöckner, Martin Bram, Herbert Hutter, Alexander Karl Opitz
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0114806

Molecular and Cellular Effects of In Vitro Shockwave Treatment on Lymphatic Endothelial Cells
Cited by: 22
Author(s): Sabrina Rohringer, Wolfgang Holnthoner, Matthias Hackl, Anna Weihs, Dominik Rünzler, Susanna Skalicky, Michael Karbiener, Marcel Scheideler, Johannes Pröll, Christian Gabriel, Bernhard Schweighofer, Marion Gröger, Andreas Spittler, Johannes Grillari, Heinz Redl
Software Mentions: 2
Published: about 10 years ago

10.7554/eLife.67510

A developmental framework linking neurogenesis and circuit formation in the Drosophila CNS
Cited by: 30
Author(s): Brandon Mark, Sen-Lin Lai, Aref Arzan Zarin, Laurina Manning, Heather Q Pollington, Ashok Litwin-Kumar, Albert Cardona, James W. Truman, Chris Q. Doe
Software Mentions: 2
Published: over 3 years ago

10.1007/s11306-015-0827-2

LC–MS-based absolute metabolite quantification: application to metabolic flux measurement in trypanosomes
Cited by: 33
Author(s): Dong-Hyun Kim, Fiona Achcar, Rainer Breitling, Karl Burgess, Michael P. Barrett
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.67092

The discriminatory power of the T cell receptor
Cited by: 41
Author(s): Johannes Pettmann, Anna Huhn, Enas Abu-Shah, Mikhail A. Kutuzov, Daniel B. Wilson, Michael L. Dustin, Simon J. Davis, P. Anton van der Merwe, Omer Dushek
Software Mentions: 1
Published: over 3 years ago

10.7554/eLife.38298

Functional instability allows access to DNA in longer transcription Activator-Like effector (TALE) arrays
Cited by: 9
Author(s): Kathryn Geiger-Schuller, Jaba Mitra, Taekjip Ha, Doug Barrick
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pcbi.1000103

Dynamics of Immune Escape during HIV/SIV Infection
Cited by: 128
Author(s): Christian L. Althaus, Rob J. de Boer
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pbio.3000298

Neutrality in the Metaorganism
Cited by: 57
Author(s): Michael Sieber, Lucía Pita, Nancy Weiland‐Bräuer, Philipp Dirksen, Jun Wang, Benedikt M Mortzfeld, Sören Franzenburg, Ruth A. Schmitz, John F. Baines, Sebastian Fraune, Ute Hentschel, Hinrich Schulenburg, Thomas C. G. Bosch, Arne Traulsen
Software Mentions: 1
Published: over 5 years ago

10.1111/tpj.12862

Cytokinin is required for escape but not release from auxin mediated apical dominance
Cited by: 119
Author(s): Dörte Müller, Tanya Waldie, Kaori Miyawaki, Jennifer P.C. To, Charles W. Melnyk, Joseph J. Kieber, Tatsuo Kakimoto, Ottoline Leyser
Software Mentions: 1
Published: over 9 years ago

10.7717/peerj.4716

FluxPyt: a Python-based free and open-source software for 13C-metabolic flux analyses
Cited by: 8
Author(s): Trunil Desai, Shireesh Srivastava
Software Mentions: 1
Published: over 6 years ago

10.3389/fninf.2016.00022

Python Executable Script for Estimating Two Effective Parameters to Individualize Brain-Computer Interfaces: Individual Alpha Frequency and Neurophysiological Predictor
Cited by: 5
Author(s): Luz María Alonso-Valerdi
Software Mentions: 1
Published: over 8 years ago

10.3389/fphys.2020.00965

The Free Achilles Tendon Is Shorter, Stiffer, Has Larger Cross-Sectional Area and Longer T2* Relaxation Time in Trained Middle-Distance Runners Compared to Healthy Controls
Cited by: 12
Author(s): Daniel Devaprakash, Steven Obst, David G. Lloyd, Rod Barrett, Ben Kennedy, Iain Ball, Kahlee L Adams, Tyler J. Collings, Giorgio Davico, Adam Hunter, Nicole Vlahovich, David Pease, Claudio Pizzolato
Software Mentions: 1
Published: over 4 years ago

10.1107/S1600576719012159

<i>FXD-CSD-GUI</i>: a graphical user interface for the X-ray-diffraction-based determination of crystallite size distributions
Cited by: 1
Author(s): Sigmund H. Neher, Helmut Klein, Werner F. Kuhs
Software Mentions: 1
Published: about 5 years ago

10.3390/molecules25040848

Ultrafast Backbone Protonation in Channelrhodopsin-1 Captured by Polarization Resolved Fs Vis-pump—IR-Probe Spectroscopy and Computational Methods
Cited by: 6
Author(s): Till Stensitzki, Suliman Adam, Ramona Schlesinger, Igor Schapiro, Karsten Heyne
Software Mentions: 1
Published: almost 5 years ago

10.1186/s13321-021-00544-w

Automated fragment formula annotation for electron ionisation, high resolution mass spectrometry: application to atmospheric measurements of halocarbons
Cited by: 2
Author(s): Myriam Guillevic, Aurore Guillevic, Martin K. Vollmer, Paul Schlauri, Matthias Hill, Lukas Emmenegger, Stefan Reimann
Software Mentions: 1
Published: about 3 years ago

10.1126/sciadv.aax2445

Ultrafast x-ray diffraction study of melt-front dynamics in polycrystalline thin films
Cited by: 17
Author(s): Tadesse Assefa, Yue Cao, Soham Banerjee, Sung-Won Kim, Dong-Jin Kim, Heemin Lee, Sunam Kim, Jae Hyuk Lee, Sang‐Youn Park, Intae Eom, Jaeku Park, Daewoong Nam, Sang Soo Kim, Sae Hwan Chun, H.J. Hyun, Kyung Sook Kim, Pavol Juhás, Emil S. Božin, Ming Lu, Changyong Song, Hyun-Jung Kim, Simon J. L. Billinge, Ian Robinson
Software Mentions: 1
Published: almost 5 years ago

10.1038/srep26249

Uncovering three-dimensional gradients in fibrillar orientation in an impact-resistant biological armour
Cited by: 26
Author(s): Y. Zhang, Oskar Paris, Nicholas J. Terrill, Himadri S. Gupta
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-017-13646-z

Prediction of Treatment Response for Combined Chemo- and Radiation Therapy for Non-Small Cell Lung Cancer Patients Using a Bio-Mathematical Model
Cited by: 52
Author(s): Changran Geng, Harald Paganetti, Clemens Grassberger
Software Mentions: 1
Published: about 7 years ago

10.3390/molecules201017807

Glucuronoyl Esterase Screening and Characterization Assays Utilizing Commercially Available Benzyl Glucuronic Acid Ester
Cited by: 19
Author(s): Hampus Sunner, Maria-Despoina Charavgi, Lisbeth Olsson, Evangelos Topakas, Paul Christakopoulos
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-021-84165-1

Power law behaviour in the saturation regime of fatality curves of the COVID-19 pandemic
Cited by: 32
Author(s): Giovani L. Vasconcelos, A. M. S. Macêdo, Gerson C. Duarte-Filho, Arthur A. Brum, Raydonal Ospina, Francisco A. G. Almeida
Software Mentions: 1
Published: almost 4 years ago

10.1186/2040-2392-5-10

Protein signatures of oxidative stress response in a patient specific cell line model for autism
Cited by: 22
Author(s): Andreas G. Chiocchetti, Denise Haslinger, Maximilian Boesch, Thomas R. Karl, Stefan Wiemann, Christine M. Freitag, Fritz Poustka, Burghardt Scheibe, Johann Bauer, Helmut Hintner, Michael Breitenbach, Josef Kellermann, Friedrich Lottspeich, Sabine M. Klauck, Hannelore Breitenbach-Koller
Software Mentions: 1
Published: almost 11 years ago

10.1038/s41598-021-88204-9

Fleeing lockdown and its impact on the size of epidemic outbreaks in the source and target regions – a COVID-19 lesson
Cited by: 6
Author(s): Maria Vittoria Barbarossa, Norbert Bogya, Attila Dénes, Gergely Röst, Hridya Vinod Varma, Zsolt Vizi
Software Mentions: 1
Published: over 3 years ago

10.1063/4.0000003

Secondary structure effects on internal proton transfer in poly-peptides
Cited by: 1
Author(s): Mathilde Bouakil, Fabien Chirot, Marion Girod, Philippe Dugourd, Luke MacAleese
Software Mentions: 1
Published: almost 5 years ago

10.3390/mps2030060

A UV/Vis Spectroscopy-Based Assay for Monitoring of Transformations Between Nucleosides and Nucleobases
Cited by: 20
Author(s): Felix Kaspar, Robert T. Giessmann, Niels Krausch, Peter Neubauer, Anke Wagner, Matthias Gimpel
Software Mentions: 1
Published: over 5 years ago

Projects: pypi: lmfit

Papers Mentioning lmfit 55