pypi: poretools | Projects | Ecosyste.ms: Papers

10.1093/bioinformatics/bty149

NanoPack: visualizing and processing long-read sequencing data
Cited by: 1,423
Author(s): Wouter De Coster, Svenn D’Hert, Darrin T. Schultz, Marc Cruts, Christine Van Broeckhoven
Software Mentions: 18
Published: over 6 years ago

10.1038/sdata.2016.25

Extensive sequencing of seven human genomes to characterize benchmark reference materials
Cited by: 535
Author(s): Justin M. Zook, David Catoe, Jennifer McDaniel, Lindsay K. Vang, Noah Spies, Arend Sidow, Ziming Weng, Yuling Liu, Christopher E. Mason, Noah Alexander, Elizabeth Hénaff, Alexa B. R. McIntyre, Dhruva Chandramohan, Feng Chen, Erich B. Jaeger, Ali Moshrefi, Khoa Pham, William Stedman, Tiffany Y. Liang, Michael Saghbini, Željko Džakula, Alex Hastie, Han Cao, Gintaras Deikus, Eric E. Schadt, Robert Sebra, Ali Kashif Bashir, Rebecca Truty, Christopher Chang, Natali Gulbahce, Keyan Zhao, Srinka Ghosh, Fiona Hyland, Yutao Fu, Mark Chaisson, Chunlin Xiao, Jonathan Trow, Stephen T. Sherry, Alexander Wait Zaranek, Madeleine Ball, Jason Bobe, Preston W. Estep, George M. Church, Patrick Marks, Sofia Kyriazopoulou-Panagiotopoulou, Grace Zheng, Michael Schnall-Levin, Heather Ordonez, Patrice A Mudivarti, Kristina Giorda, Ying Sheng, Karoline Bjarnesdatter Rypdal, Marc Salit
Software Mentions: 6
Published: over 8 years ago

10.1186/s13059-015-0677-2

Rapid draft sequencing and real-time nanopore sequencing in a hospital outbreak of Salmonella
Cited by: 262
Author(s): Joshua Quick, Philip Ashton, Szymon T. Calus, C Chatt, Savita Gossain, Jeremy Hawker, Satheesh Nair, Keith Neal, K. Nye, Tansy Peters, Elizabeth de Pinna, Esther Robinson, Keith Struthers, Mark A. Webber, Andrew J. Catto, Timothy J. Dallman, Peter M. Hawkey, Nicholas J. Loman
Software Mentions: 5
Published: over 9 years ago

10.1371/journal.pone.0216471

NanoR: A user-friendly R package to analyze and compare nanopore sequencing data
Cited by: 17
Author(s): Davide Bolognini, Niccolò Bartalucci, Alessandra Mingrino, Alessandro M. Vannucchi, Alberto Magi
Software Mentions: 5
Published: over 5 years ago

10.1093/jac/dkz526

Genomic dynamics of species and mobile genetic elements in a prolonged blaIMP-4-associated carbapenemase outbreak in an Australian hospital
Cited by: 28
Author(s): Assaf Gordon, Hang Phan, Samuel Lipworth, Elaine Cheong, Thomas Gottlieb, Sophie George, Tim Peto, Amy J Mathers, A Sarah Walker, Derrick W. Crook, Nicole Stoesser
Software Mentions: 5
Published: over 4 years ago

10.12688/f1000research.11022.3

Picopore: A tool for reducing the storage size of Oxford Nanopore Technologies datasets without loss of functionality
Cited by: 3
Author(s): Scott Gigante
Software Mentions: 5
Published: almost 7 years ago

10.1186/s13059-020-02013-3

FORK-seq: replication landscape of the Saccharomyces cerevisiae genome by nanopore sequencing
Cited by: 33
Author(s): Magali Hennion, Jean‐Michel Arbona, Laurent Lacroix, Corinne Cruaud, Bertrand Theulot, Benoît Le Tallec, Florence Proux, Xia Wu, Elizaveta Novikova, Stéfan Engelen, Arnaud Lemainque, Benjamin Audit, Olivier Hyrien
Software Mentions: 4
Published: over 4 years ago

10.1186/s12915-020-00927-9

Rapid protein evolution, organellar reductions, and invasive intronic elements in the marine aerobic parasite dinoflagellate Amoebophrya spp
Cited by: 29
Author(s): Sarah Farhat, Phuong Thi Le, Ehsan Kayal, Benjamin Noël, Estelle Bigeard, Matthieu Le Corre, Florian Maumus, Isabelle Florent, Adriana Alberti, Jean‐Marc Aury, Tristan Barbeyron, Ruibo Cai, Corinne Da Silva, Benjamin Istace, Karine Labadie, Dominique Marie, Jonathan Mercier, Tsinda Rukwavu, Jeremy Szymczak, Thierry Tonon, Catharina Alves‐de‐Souza, Pierre Rouzé, Yves Van de Peer, Patrick Wincker, Stéphane Rombauts, Betina M. Porcel, Laure Guillou
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0217600

Exploration of antibiotic resistance risks in a veterinary teaching hospital with Oxford Nanopore long read sequencing
Cited by: 15
Author(s): Kanishka Indiwari Kamathewatta, Rhys N. Bushell, Neil D. Young, Mark Stevenson, Helen Billman‐Jacobe, Glenn F. Browning, Marc S. Marenda
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0216709

Reading canonical and modified nucleobases in 16S ribosomal RNA using nanopore native RNA sequencing
Cited by: 126
Author(s): Andrew Smith, Miten Jain, Logan Mulroney, Daniel R. Garalde, Mark Akeson
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-018-26259-x

Nanopore sequencing technology: a new route for the fast detection of unauthorized GMO
Cited by: 22
Author(s): Marie‐Alice Fraiture, Assia Saltykova, Stefan Hoffman, Raf Winand, Dieter Deforce, Kevin Vanneste, Sigrid C. J. De Keersmaecker
Software Mentions: 4
Published: over 6 years ago

10.12688/f1000research.10571.2

Comprehensive comparison of Pacific Biosciences and Oxford Nanopore Technologies and their applications to transcriptome analysis
Cited by: 332
Author(s): Jason L. Weirather, Mariateresa de Cesare, Yunhao Wang, Paolo Piazza, Vittorio Sebastiano, Xiu‐Jie Wang, David Buck, Kin Fai Au
Software Mentions: 4
Published: about 7 years ago

10.1007/s00401-017-1743-5

Same-day genomic and epigenomic diagnosis of brain tumors using real-time nanopore sequencing
Cited by: 120
Author(s): Philipp Euskirchen, Franck Bielle, Karim Labreche, Wigard P. Kloosterman, Shai Rosenberg, Maïlys Daniau, Charlotte Schmitt, Julien Masliah‐Planchon, Franck Bourdeaut, Caroline Dehais, Yannick Marie, Jean‐Yves Delattre, Ahmed Idbaïh
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pgen.1007819

The complex architecture and epigenomic impact of plant T-DNA insertions
Cited by: 98
Author(s): Florian Jupe, Angeline Rivkin, Todd P. Michael, Mark Zander, S. Timothy Motley, Justin P. Sandoval, R. Keith Slotkin, Huaming Chen, Rosa Castanon, Joseph R. Nery, Joseph R. Ecker
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-018-23641-7

Unbiased Strain-Typing of Arbovirus Directly from Mosquitoes Using Nanopore Sequencing: A Field-forward Biosurveillance Protocol
Cited by: 43
Author(s): Joseph A. Russell, Brittany Campos, Jennifer Stone, Erik M. Blosser, Nathan D. Burkett‐Cadena, Jonathan L. Jacobs
Software Mentions: 3
Published: over 6 years ago

10.3389/fmicb.2019.00212

Nasal Resistome Development in Infants With Cystic Fibrosis in the First Year of Life
Cited by: 9
Author(s): Aurélie Allemann, Julia G. Kraemer, Insa Korten, Kathryn Ramsey, Carmen Casaulta, Daniel Wüthrich, Alban Ramette, Andrea Endimiani, Philipp Latzin, Markus Hilty
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2019.01446

Pan-Genomic and Polymorphic Driven Prediction of Antibiotic Resistance in Elizabethkingia
Cited by: 13
Author(s): Bryan Naidenov, Alexander Lim, Karyn Willyerd, Nathanial Torres, William L. Johnson, Hong Jin Hwang, Peter R. Hoyt, John E. Gustafson, Charles Chen
Software Mentions: 3
Published: about 5 years ago

10.3389/fgene.2019.00253

Analysis of Transcriptome and Epitranscriptome in Plants Using PacBio Iso-Seq and Nanopore-Based Direct RNA Sequencing
Cited by: 100
Author(s): Liangzhen Zhao, Hangxiao Zhang, Markus V. Kohnen, Kasavajhala V. S. K. Prasad, Lianfeng Gu, Anireddy S. N. Reddy
Software Mentions: 3
Published: over 5 years ago

10.1186/s40168-019-0703-9

NanoARG: a web service for detecting and contextualizing antimicrobial resistance genes from nanopore-derived metagenomes
Cited by: 62
Author(s): Gustavo Arango-Argoty, Dongjuan Dai, Amy Pruden, Peter J. Vikesland, Lenwood S. Heath, Liqing Zhang
Software Mentions: 3
Published: over 5 years ago

10.1038/sdata.2018.235

De novo assembly and annotation of three Leptosphaeria genomes using Oxford Nanopore MinION sequencing
Cited by: 50
Author(s): Fabien Dutreux, Corinne Da Silva, Léo d'Agata, Arnaud Couloux, Benjamin Istace, Nicolas Lapalu, Arnaud Lemainque, Juliette Linglin, Benjamin Noël, Patrick Wincker, Corinne Cruaud, Thierry Rouxel, Marie‐Hélène Balesdent, Jean‐Marc Aury
Software Mentions: 2
Published: almost 6 years ago

10.1007/s00401-017-1714-x

Deleterious ABCA7 mutations and transcript rescue mechanisms in early onset Alzheimer’s disease
Cited by: 49
Author(s): Arne De Roeck, Tobi Van den Bossche, Julie van der Zee, Jan Verheijen, Wouter De Coster, Jasper Van Dongen, Lubina Dillen, Yalda Baradaran-Heravi, Bavo Heeman, Raquel Sánchez‐Valle, Albert Lladó, Benedetta Nacmias, Sandro Sorbi, Ellen Gelpí, Oriol Grau‐Rivera, Estrella Gómez‐Tortosa, Pau Pástor, Sara Ortega‐Cubero, María A. Pastor, Caroline Graff, Håkan Thonberg, Luisa Benussi, Roberta Ghidoni, Giuliano Binetti, Alexandre de Mendonça, Madalena Martins, Barbara Borroni, Alessandro Padovani, Maria Rosário Almeida, Isabel Santana, Janine Diehl‐Schmid, Panagiotis Alexopoulos, Jordi Clarimón, Alberto Lleó, Juan Fortea, Magda Tsolaki, Maria Koutroumani, Radoslav Matěj, Zdeněk Rohan, Peter De Deyn, Sebastiaan Engelborghs, Patrick Cras, Christine Van Broeckhoven, Kristel Sleegers
Software Mentions: 2
Published: over 7 years ago

10.1186/s12864-021-07791-z

Sequoia: an interactive visual analytics platform for interpretation and feature extraction from nanopore sequencing datasets
Cited by: 2
Author(s): Ratanond Koonchanok, Swapna Vidhur Daulatabad, Quoseena Mir, Khairi Reda, Sarath Chandra Janga
Software Mentions: 2
Published: about 3 years ago

10.1186/s12864-015-1519-z

Genome assembly using Nanopore-guided long and error-free DNA reads
Cited by: 162
Author(s): Mohammed‐Amin Madoui, Stéfan Engelen, Corinne Cruaud, Caroline Belser, Laurie Bertrand, Adriana Alberti, Arnaud Lemainque, Patrick Wincker, Jean‐Marc Aury
Software Mentions: 2
Published: over 9 years ago

10.1093/bioinformatics/btv540

NanoOK: multi-reference alignment analysis of nanopore sequencing data, quality and error profiles
Cited by: 46
Author(s): Richard M. Leggett, Darren Heavens, Mario Cáccamo, Matt Clark, Robert P. Davey
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0184741

On site DNA barcoding by nanopore sequencing
Cited by: 92
Author(s): Michele Menegon, Chiara Cantaloni, Ana Rodríguez-Prieto, Cesare Centomo, Ahmed Abdelfattah, Marzia Rossato, Massimo Bernardi, Luciano Xumerle, Simon P. Loader, Massimo Delledonne
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0219961

Rapid metagenomics analysis of EMS vehicles for monitoring pathogen load using nanopore DNA sequencing
Cited by: 8
Author(s): Taylor Sheahan, Rhys Hakstol, Senthilkumar Kailasam, Graeme D. Glaister, Andrew J. Hudson, Hans-Joachim Wieden
Software Mentions: 2
Published: about 5 years ago

10.12688/f1000research.11354.1

MinION Analysis and Reference Consortium: Phase 2 data release and analysis of R9.0 chemistry
Cited by: 104
Author(s): Miten Jain, John R. Tyson, Matthew Loose, Camilla L. C. Ip, David Eccles, Justin O’Grady, Sunir Malla, Richard M. Leggett, Ola Wallerman, Hans J. Jansen, Vadim Zalunin, Ewan Birney, Bonnie L. Brown, Terrance P. Snutch, Hugh E. Olsen, MinION Analysis
Software Mentions: 2
Published: over 7 years ago

10.1186/s13059-015-0849-0

Circlator: automated circularization of genome assemblies using long sequencing reads
Cited by: 715
Author(s): Martin Hunt, Nishadi De Silva, Thomas D. Otto, Julian Parkhill, Jacqueline A. Keane, Simon R. Harris
Software Mentions: 2
Published: almost 9 years ago

10.1186/s13742-016-0111-z

Species-level resolution of 16S rRNA gene amplicons sequenced through the MinION™ portable nanopore sequencer
Cited by: 172
Author(s): Alfonso Benı́tez-Páez, Kevin J. Portune, Yolanda Sanz
Software Mentions: 2
Published: over 8 years ago

10.1186/s13742-016-0140-7

INC-Seq: accurate single molecule reads using nanopore sequencing
Cited by: 127
Author(s): Chenhao Li, Kern Rei Chng, Esther J. H. Boey, Amanda Hui Qi Ng, Andreas Wilm, Niranjan Nagarajan
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.ppat.1006365

Parallel ClickSeq and Nanopore sequencing elucidates the rapid evolution of defective-interfering RNAs in Flock House virus
Cited by: 54
Author(s): Elizabeth Jaworski, Andrew Routh
Software Mentions: 2
Published: over 7 years ago

10.1038/srep29681

Analysis of the mouse gut microbiome using full-length 16S rRNA amplicon sequencing
Cited by: 162
Author(s): Jisoo Shin, Sooin Lee, Min‐Jeong Go, Sang Yup Lee, Sun Chang Kim, Chul‐Ho Lee, Byung-Kwan Cho
Software Mentions: 2
Published: about 8 years ago

10.1038/s41598-018-23342-1

Identification of potential regulatory mutations using multi-omics analysis and haplotyping of lung adenocarcinoma cell lines
Cited by: 8
Author(s): Sarun Sereewattanawoot, Ayako Suzuki, Masahide Seki, Yoshitaka Sakamoto, Takashi Kohno, Sumio Sugano, Katsuya Tsuchihara, Yutaka Suzuki
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-018-23634-6

Elucidation of the bacterial communities associated with the harmful microalgae Alexandrium tamarense and Cochlodinium polykrikoides using nanopore sequencing
Cited by: 42
Author(s): HyeonSeok Shin, Eun‐Ju Lee, Jisoo Shin, So-Ra Ko, Hyung-Seok Oh, Chi‐Yong Ahn, Hee‐Mock Oh, Byung-Kwan Cho, Suhyung Cho
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-018-29334-5

Evaluation of Oxford Nanopore’s MinION Sequencing Device for Microbial Whole Genome Sequencing Applications
Cited by: 183
Author(s): Andrea D. Tyler, Laura Mataseje, Chantel Urfano, Lisa Schmidt, Kym Antonation, Michael R. Mulvey, Cindi R. Corbett
Software Mentions: 2
Published: about 6 years ago

10.1128/mSystems.00171-16

Lifestyle and Horizontal Gene Transfer-Mediated Evolution of Mucispirillum schaedleri, a Core Member of the Murine Gut Microbiota
Cited by: 130
Author(s): Alexander Loy, Carina Pfann, Michaela Steinberger, Buck Hanson, Simone Herp, Sandrine Brugiroux, João Carlos Gomes-Neto, Mark V. Boekschoten, Clarissa Schwab, Tim Urich, Amanda E. Ramer‐Tait, Thomas Rattei, Bärbel Stecher, David Berry
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-019-43463-5

MinION sequencing technology to characterize unauthorized GM petunia plants circulating on the European Union market
Cited by: 12
Author(s): Marie‐Alice Fraiture, Gabriella Ujhelyi, Jaroslava Ovesná, Dirk Van Geel, Sigrid C. J. De Keersmaecker, Assia Saltykova, Nina Papazova, Nancy Roosens
Software Mentions: 1
Published: over 5 years ago

10.1093/ve/veab058

Human genomics of the humoral immune response against polyomaviruses
Cited by: 5
Author(s): Flavia Hodel, Amanda Y Chong, Petar Šćepanović, Zhi Ming Xu, Olivier Naret, Christian W Thorball, Sina Rüeger, Pedro Marques‐Vidal, Péter Vollenweider, Martin Begemann, Hannelore Ehrenreich, Nicole Brenner, Noemi Bender, Tim Waterboer, Alexander J. Mentzer, Adrian V. S. Hill, Christian Hammer, Jacques Fellay
Software Mentions: 1
Published: over 3 years ago

10.1099/mgen.0.000118

Resolving plasmid structures in Enterobacteriaceae using the MinION nanopore sequencer: assessment of MinION and MinION/Illumina hybrid data assembly approaches
Cited by: 62
Author(s): Sophie George, Louise Pankhurst, Alasdair T. M. Hubbard, Antonia Votintseva, Nicole Stoesser, Anna E. Sheppard, Amy J Mathers, Rachel Norris, Indre Navickaite, Chloe Eaton, Zamin Iqbal, Derrick W. Crook, Hang Phan
Software Mentions: 1
Published: over 7 years ago

10.1186/2047-217X-3-22

A reference bacterial genome dataset generated on the MinION™ portable single-molecule nanopore sequencer
Cited by: 208
Author(s): Joshua Quick, Aaron R. Quinlan, Nicholas J. Loman
Software Mentions: 1
Published: almost 10 years ago

10.1128/mBio.00583-18

Extensive Gene Amplification as a Mechanism for Piperacillin-Tazobactam Resistance in Escherichia coli
Cited by: 49
Author(s): Lisa M. Schechter, David Creely, Cherilyn D. Garner, Dee Shortridge, Hoan Nguyen, Lei Chen, Blake Hanson, Erica Sodergren, George M. Weinstock, W. Michael Dunne, Alex van Belkum, Shana R. Leopold
Software Mentions: 1
Published: over 6 years ago

10.1093/bioinformatics/btx136

poRe GUIs for parallel and real-time processing of MinION sequence data
Cited by: 8
Author(s): Robert D. Stewart, Michael Watson
Software Mentions: 1
Published: over 7 years ago

10.1093/gigascience/giw018

de novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer
Cited by: 117
Author(s): Benjamin Istace, Anne Friedrich, Léo d'Agata, Sébastien Faye, Emilie Payen, Odette Beluche, Claudia Caradec, Sabrina Davidas, Corinne Cruaud, Gianni Liti, Arnaud Lemainque, Stéfan Engelen, Patrick Wincker, Joseph Schacherer, Jean‐Marc Aury
Software Mentions: 1
Published: over 7 years ago

10.1093/gigascience/giab027

A chromosome-level reference genome of the hazelnut, <i>Corylus heterophylla</i> Fisch
Cited by: 11
Author(s): Tengteng Zhao, Wenxu Ma, Zhen Yang, Lisong Liang, Xin Chen, Guixi Wang, Qinghua Ma, Lujun Wang
Software Mentions: 1
Published: over 3 years ago

10.1097/MD.0000000000022641

Detection of an unusual G8P[8] rotavirus in a Rotarix-vaccinated child with acute gastroenteritis using Nanopore MinION sequencing
Cited by: 2
Author(s): Jong-Hwa Kim, Dae Yong Yi, Inseok Lim, Alan C. Ward, Wonyong Kim
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12864-017-3753-z

Detection of active transposable elements in Arabidopsis thaliana using Oxford Nanopore Sequencing technology
Cited by: 38
Author(s): Émilie Debladis, Christel Llauro, Marie-Christine Carpentier, Marie Mirouze, Olivier Panaud
Software Mentions: 1
Published: about 7 years ago

10.1093/bioinformatics/btu555

Poretools: a toolkit for analyzing nanopore sequence data
Cited by: 378
Author(s): Nicholas J. Loman, Aaron R. Quinlan
Software Mentions: 1
Published: about 10 years ago

10.1093/bioinformatics/btu590

poRe: an R package for the visualization and analysis of nanopore sequencing data
Cited by: 84
Author(s): Michael Watson, Marian Thomson, Judith Risse, Richard Talbot, Javier Santoyo-López, Karim Gharbi, Mark Blaxter
Software Mentions: 1
Published: about 10 years ago

10.1038/srep28625

Characterization, correction and de novo assembly of an Oxford Nanopore genomic dataset from Agrobacterium tumefaciens
Cited by: 28
Author(s): Stéphane Deschamps, Joann Mudge, Connor Cameron, Thiruvarangan Ramaraj, Ajith Anand, Kevin Fengler, Kevin Hayes, Víctor Llaca, Todd J. Jones, Gregory D. May
Software Mentions: 1
Published: about 8 years ago

10.7554/eLife.35453

Long read sequencing reveals poxvirus evolution through rapid homogenization of gene arrays
Cited by: 18
Author(s): Thomas A Sasani, Kelsey R. Cone, Aaron R. Quinlan, Nels C. Elde
Software Mentions: 1
Published: about 6 years ago

10.1038/srep35617

Diversity of antibiotic-resistance genes in Canadian isolates of Aeromonas salmonicida subsp. salmonicida: dominance of pSN254b and discovery of pAsa8
Cited by: 48
Author(s): Mélanie V. Trudel, Antony T. Vincent, Sabrina A. Attéré, Myriam Labbé, Nicolas Derôme, Alexander I. Culley, Steve J. Charette
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-017-13712-6

Nanopore-based single molecule sequencing of the D4Z4 array responsible for facioscapulohumeral muscular dystrophy
Cited by: 34
Author(s): Satomi Mitsuhashi, So Nakagawa, Mahoko Takahashi Ueda, Tadashi Imanishi, Martin C. Frith, Hiroaki Mitsuhashi
Software Mentions: 1
Published: almost 7 years ago

10.12688/f1000research.6037.2

Long read nanopore sequencing for detection of HLA and CYP2D6 variants and haplotypes
Cited by: 93
Author(s): Ron Ammar, Tara Paton, Dax Torti, Adam Shlien, Gary D. Bader
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-18910-w

Cryptic transmission of ST405 Escherichia coli carrying bla NDM-4 in hospital
Cited by: 16
Author(s): Xiaoxia Zhang, Yu Feng, Weilong Zhou, Alan McNally, Zhiyong Zong
Software Mentions: 1
Published: over 6 years ago

10.12688/f1000research.12414.2

First de novo draft genome sequence of Oryza coarctata, the only halophytic species in the genus Oryza
Cited by: 12
Author(s): Tapan Kumar Mondal, Hukam C. Rawal, Kishor Gaikwad, Tilak Raj Sharma, Nagendra Singh
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0198135

Whole genome sequence and comparative analysis of Borrelia burgdorferi MM1
Cited by: 8
Author(s): Neda Jabbari, Gustavo Glusman, Lena M. Joesch-Cohen, Panga Jaipal Reddy, Robert L. Moritz, Leroy Hood, Christopher Lausted
Software Mentions: 1
Published: over 6 years ago

10.3389/fgene.2018.00152

Multiplexed Nanopore Sequencing of HLA-B Locus in Māori and Pacific Island Samples
Cited by: 15
Author(s): Kim N. T. Ton, Simone L. Cree, Sabine Gronert-Sum, Tony R. Merriman, Lisa K. Stamp, Martin A. Kennedy
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2015.00766

MinION nanopore sequencing of an influenza genome
Cited by: 61
Author(s): Jing Wang, Nicole E. Moore, Yi‐Mo Deng, David Eccles, Richard J. Hall
Software Mentions: 1
Published: over 9 years ago

10.7717/peerj.1441

Assessing the utility of the Oxford Nanopore MinION for snake venom gland cDNA sequencing
Cited by: 35
Author(s): Adam D Hargreaves, John F. Mulley
Software Mentions: 1
Published: almost 9 years ago

10.3390/v11040317

Development of a Versatile, Near Full Genome Amplification and Sequencing Approach for a Broad Variety of HIV-1 Group M Variants
Cited by: 10
Author(s): Andrew N. Banin, Michael Tuen, Jude Bimela, Marcel Tongo, Paul Zappile, Alireza Khodadadi‐Jamayran, Aubin Nanfack, Josephine Meli, Xiaohong Wang, Dora Mbanya, Jeanne Ngogang, Adriana Heguy, Phillipe N. Nyambi, Charles Fokunang, Ralf Duerr
Software Mentions: 1
Published: over 5 years ago

10.1128/genomeA.01275-16

Draft Genome Sequence of Robinsoniella peoriensis 6600698, a Confounder of Clostridium difficile Diagnosis
Cited by: 1
Author(s): Chrissy h. Roberts, Helen Alexandra Shaw, Natalie Ferguson, Mark Holland, Brendan W. Wren, Richard A. Stabler
Software Mentions: 1
Published: over 7 years ago

10.1128/genomeA.01184-17

Complete Genome Sequence of <i>Kluyvera intestini</i> sp. nov., Isolated from the Stomach of a Patient with Gastric Cancer
Cited by: 14
Author(s): George Tetz, Maria Vecherkovskaya, Paul Zappile, Igor Dolgalev, Aristotelis Tsirigos, Adriana Heguy, Victor Tetz
Software Mentions: 1
Published: almost 7 years ago

Projects: pypi: poretools

Papers Mentioning poretools 62