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An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.1186/s13059-015-0677-2

https://doi.org/10.1186/s13059-015-0677-2

Rapid draft sequencing and real-time nanopore sequencing in a hospital outbreak of Salmonella

Cited by: 262
Author(s): Joshua Quick, Philip Ashton, Szymon T. Calus, C Chatt, Savita Gossain, Jeremy Hawker, Satheesh Nair, Keith Neal, K. Nye, Tansy Peters, Elizabeth de Pinna, Esther Robinson, Keith Struthers, Mark A. Webber, Andrew J. Catto, Timothy J. Dallman, Peter M. Hawkey, Nicholas J. Loman
Published: about 10 years ago

Software Mentions 5

cran: seqmagick
Sequence Manipulation Utilities
Papers that mentioned: 8
Very Likely Science (100)
pypi: MetaPhlAn
MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea and Eukaryotes) from metagenomic shotgun sequencing data (i.e. not 16S) with species-level. With the newly added StrainPhlAn module, it is now possible to perform accurate strain-level microbial profiling.
Papers that mentioned: 306
Very Likely Science (100)
pypi: poretools
A toolset for working with nanopore sequencing data
Papers that mentioned: 62
Very Likely Science (90)
pypi: seqmagick
Tools for converting and modifying sequence files from the command-line
Papers that mentioned: 8
Very Likely Science (100)
pypi: taxtastic
Tools for taxonomic naming and annotation
Papers that mentioned: 1
Very Likely Science (100)