Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: seqmagick
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/seqmagick
Sequence Manipulation Utilities
6 versions
Latest release: over 1 year ago
718 downloads last month
Papers Mentioning seqmagick 8
10.1371/journal.pone.0163962
SeqKit: A Cross-Platform and Ultrafast Toolkit for FASTA/Q File ManipulationCited by: 1,226
Author(s): Wei Shen, Shuai Le, Yan Li, Fuquan Hu
Software Mentions: 7
Published: about 8 years ago
10.1093/bioinformatics/btw088
fqtools: an efficient software suite for modern FASTQ file manipulationCited by: 21
Author(s): Alastair Droop
Software Mentions: 5
Published: over 8 years ago
10.1186/s13059-015-0677-2
Rapid draft sequencing and real-time nanopore sequencing in a hospital outbreak of SalmonellaCited by: 262
Author(s): Joshua Quick, Philip Ashton, Szymon T. Calus, C Chatt, Savita Gossain, Jeremy Hawker, Satheesh Nair, Keith Neal, K. Nye, Tansy Peters, Elizabeth de Pinna, Esther Robinson, Keith Struthers, Mark A. Webber, Andrew J. Catto, Timothy J. Dallman, Peter M. Hawkey, Nicholas J. Loman
Software Mentions: 5
Published: over 9 years ago
10.1038/s41396-018-0343-2
Divergent methyl-coenzyme M reductase genes in a deep-subseafloor ArchaeoglobiCited by: 74
Author(s): Joel A. Boyd, Sean P. Jungbluth, Andy O. Leu, Paul N. Evans, Ben J. Woodcroft, Grayson L. Chadwick, Victoria J. Orphan, Jan P. Amend, Michael S. Rappé, Gene W. Tyson
Software Mentions: 4
Published: almost 6 years ago
10.3390/v13081424
Application of Oxford Nanopore Technology to Plant Virus DetectionCited by: 32
Author(s): L. W. Liefting, David W. Waite, Jeremy R. Thompson
Software Mentions: 4
Published: over 3 years ago
10.3389/fmicb.2019.02558
Glacial Runoff Promotes Deep Burial of Sulfur Cycling-Associated Microorganisms in Marine SedimentsCited by: 14
Author(s): Claus Pelikan, Marion Jaussi, Kenneth Wasmund, Marit‐Solveig Seidenkrantz, Christof Pearce, Zou Zou A. Kuzyk, Craig W. Herbold, Hans Røy, Kasper Urup Kjeldsen, Alexander Loy
Software Mentions: 4
Published: about 5 years ago
10.1371/journal.ppat.1005225
Non-Human Primates Harbor Diverse Mammalian and Avian Astroviruses Including Those Associated with Human InfectionsCited by: 63
Author(s): Erik A. Karlsson, Christopher T Small, Pamela Freiden, MM Feeroz, F. A. Matsen, San Sorn, Md. Rakib Hasan, David Wang, Lisa Jones‐Engel, Stacey Schultz‐Cherry
Software Mentions: 3
Published: almost 9 years ago
10.3389/fpls.2019.00293
Phylogenetic Distribution and Diversity of Bacterial Pseudo-Orthocaspases Underline Their Putative Role in PhotosynthesisCited by: 17
Author(s): Marina Klemenčič, Johannes Asplund-Samuelsson, Marko Dolinar, Christiane Funk
Software Mentions: 3
Published: over 5 years ago