Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: seqmagick

https://packages.ecosyste.ms/registries/pypi.org/packages/seqmagick

Tools for converting and modifying sequence files from the command-line
12 versions
Latest release: almost 2 years ago
156 downloads last month

Papers Mentioning seqmagick 8

10.1371/journal.pone.0163962

SeqKit: A Cross-Platform and Ultrafast Toolkit for FASTA/Q File Manipulation
Cited by: 1,226
Author(s): Wei Shen, Shuai Le, Yan Li, Fuquan Hu
Software Mentions: 7
Published: about 8 years ago

10.1093/bioinformatics/btw088

fqtools: an efficient software suite for modern FASTQ file manipulation
Cited by: 21
Author(s): Alastair Droop
Software Mentions: 5
Published: almost 9 years ago

Rapid draft sequencing and real-time nanopore sequencing in a hospital outbreak of Salmonella
Cited by: 262
Author(s): Joshua Quick, Philip Ashton, Szymon T. Calus, C Chatt, Savita Gossain, Jeremy Hawker, Satheesh Nair, Keith Neal, K. Nye, Tansy Peters, Elizabeth de Pinna, Esther Robinson, Keith Struthers, Mark A. Webber, Andrew J. Catto, Timothy J. Dallman, Peter M. Hawkey, Nicholas J. Loman
Software Mentions: 5
Published: over 9 years ago

10.1038/s41396-018-0343-2

Divergent methyl-coenzyme M reductase genes in a deep-subseafloor Archaeoglobi
Cited by: 74
Author(s): Joel A. Boyd, Sean P. Jungbluth, Andy O. Leu, Paul N. Evans, Ben J. Woodcroft, Grayson L. Chadwick, Victoria J. Orphan, Jan P. Amend, Michael S. Rappé, Gene W. Tyson
Software Mentions: 4
Published: almost 6 years ago

10.3390/v13081424

Application of Oxford Nanopore Technology to Plant Virus Detection
Cited by: 32
Author(s): L. W. Liefting, David W. Waite, Jeremy R. Thompson
Software Mentions: 4
Published: over 3 years ago

10.3389/fmicb.2019.02558

Glacial Runoff Promotes Deep Burial of Sulfur Cycling-Associated Microorganisms in Marine Sediments
Cited by: 14
Author(s): Claus Pelikan, Marion Jaussi, Kenneth Wasmund, Marit‐Solveig Seidenkrantz, Christof Pearce, Zou Zou A. Kuzyk, Craig W. Herbold, Hans Røy, Kasper Urup Kjeldsen, Alexander Loy
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.ppat.1005225

Non-Human Primates Harbor Diverse Mammalian and Avian Astroviruses Including Those Associated with Human Infections
Cited by: 63
Author(s): Erik A. Karlsson, Christopher T Small, Pamela Freiden, MM Feeroz, F. A. Matsen, San Sorn, Md. Rakib Hasan, David Wang, Lisa Jones‐Engel, Stacey Schultz‐Cherry
Software Mentions: 3
Published: about 9 years ago

10.3389/fpls.2019.00293

Phylogenetic Distribution and Diversity of Bacterial Pseudo-Orthocaspases Underline Their Putative Role in Photosynthesis
Cited by: 17
Author(s): Marina Klemenčič, Johannes Asplund-Samuelsson, Marko Dolinar, Christiane Funk
Software Mentions: 3
Published: almost 6 years ago