pypi: map | Projects | Ecosyste.ms: Papers

10.1002/ece3.3240

feedrand animalnexus.ca: A paired R package and user-friendly Web application for transforming and visualizing animal movement data from static stations
Cited by: 9
Author(s): Steffi LaZerte, Matthew W. Reudink, Ken A. Otter, Jackson W. Kusack, Jacob Bailey, A. Woolverton, Mark Paetkau, Adriaan de Jong, David Hill
Software Mentions: 14
Published: about 7 years ago

10.12688/f1000research.15949.2

The Mega2R package: R tools for accessing and processing genetic data in common formats
Cited by: 0
Author(s): R. Baron, Justin R. Stickel, Daniel E. Weeks
Software Mentions: 12
Published: over 5 years ago

10.1107/S2059798319011471

Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix
Cited by: 3,483
Author(s): Dorothée Liebschner, Pavel V. Afonine, Matthew L. Baker, G. Bunkóczi, V.B. Chen, Tristan I. Croll, Bradley J. Hintze, Li Wei Hung, Swati Jain, Airlie J. McCoy, Nigel W. Moriarty, Robert D. Oeffner, Billy K. Poon, Michael G. Prisant, R.J. Read, Jane S. Richardson, David C. Richardson, Massimo Sammito, Oleg Sobolev, Duncan H. Stockwell, Thomas C. Terwilliger, Alexandre Urzhumtsev, Lizbeth L. Videau, Christopher J. Williams, Paul D. Adams
Software Mentions: 8
Published: about 5 years ago

10.1371/journal.pone.0239086

Geospatial analysis of the patterns of chemical exposures among biota in the Canadian Oil Sands Region
Cited by: 3
Author(s): Kristin M. Eccles, Bruce D. Pauli, Hing Man Chan
Software Mentions: 6
Published: about 4 years ago

10.1186/s13059-020-02160-7

Removing reference bias and improving indel calling in ancient DNA data analysis by mapping to a sequence variation graph
Cited by: 33
Author(s): Rui Martiniano, Erik Garrison, Eppie R. Jones, Andrea Manica, Richard Durbin
Software Mentions: 6
Published: about 4 years ago

10.1155/2020/5816763

Screening of T Cell-Related Long Noncoding RNA-MicroRNA-mRNA Regulatory Networks in Non-Small-Cell Lung Cancer
Cited by: 6
Author(s): Jinping Duan, Yuefen Pan, Yang Xi, Liping Zhong, Jia Yin, Jingying Xu, Zhuang Jing, Shuwen Han
Software Mentions: 6
Published: about 4 years ago

10.1111/eva.12567

Rapid evolution leads to differential population dynamics and top‐down control in resurrected Daphnia populations
Cited by: 14
Author(s): Eyerusalem Goitom, Laurens J. Kilsdonk, Kristien I. Brans, Mieke Jansen, Pieter Lemmens, Luc De Meester
Software Mentions: 6
Published: about 7 years ago

10.1016/j.cell.2021.07.018

TDP-43 condensation properties specify its RNA-binding and regulatory repertoire
Cited by: 99
Author(s): Martina Hallegger, Anob M. Chakrabarti, Flora Lee, Bo Lim Lee, Aram Gustav Amalietti, Hana M. Odeh, Katie E. Copley, Jack D. Rubien, Bede Portz, Klara Kuret, Ina Huppertz, Frédérique Rau, Rickie Patani, Nicolas L. Fawzi, James Shorter, Nicholas M. Luscombe, Jernej Ule
Software Mentions: 6
Published: about 3 years ago

10.1371/journal.pone.0234489

Application of network analysis and cluster analysis for better prevention and control of swine diseases in Argentina
Cited by: 11
Author(s): Jerome N. Baron, María Natalia Aznar, M. Monterubbianesi, Beatriz Martínez‐López
Software Mentions: 5
Published: over 4 years ago

10.7705/biomedica.4753

Análisis de la variabilidad genética de una muestra de la población de Bogotá: hacia la constitución de un mapa de haplotipos
Cited by: 2
Author(s): Juan David Caicedo, Alejandro Cáceres, Carlos E. Arboleda-Bustos, María Fernanda Mahecha, Jenny Ortega, Gonzalo Arboleda, Humberto Arboleda
Software Mentions: 5
Published: about 5 years ago

10.1107/S1600576715010092

TEMPy: a Python library for assessment of three-dimensional electron microscopy density fits
Cited by: 70
Author(s): Irene Farabella, Daven Vasishtan, Agnel Praveen Joseph, Arun Prasad Pandurangan, Harpal Sahota, Maya Topf
Software Mentions: 4
Published: over 9 years ago

10.1093/gigascience/giz060

BSA4Yeast: Web-based quantitative trait locus linkage analysis and bulk segregant analysis of yeast sequencing data
Cited by: 3
Author(s): Zhang Zhi, Paul P. Jung, Valentin Grouès, Patrick May, Carole L. Linster, Enrico Glaab
Software Mentions: 4
Published: over 5 years ago

10.1186/1476-072X-9-14

Web GIS in practice VIII: HTML5 and the canvas element for interactive online mapping
Cited by: 46
Author(s): Maged N. Kamel Boulos, Jeffrey Warren, Jianya Gong, Peng Yue
Software Mentions: 4
Published: almost 15 years ago

10.1186/s12859-017-1881-8

K-mer clustering algorithm using a MapReduce framework: application to the parallelization of the Inchworm module of Trinity
Cited by: 14
Author(s): Chang Sik Kim, Martyn Winn, Vipin Sachdeva, Kirk E. Jordan
Software Mentions: 4
Published: about 7 years ago

10.1534/g3.116.028324

Histone H1 Limits DNA Methylation in Neurospora crassa
Cited by: 18
Author(s): Michael Seymour, Lexiang Ji, Alex M. Santos, Masayuki Kamei, Takahiko Sasaki, Evelina Y. Basenko, Robert J. Schmitz, Xiaoyu Zhang, Zachary A. Lewis
Software Mentions: 4
Published: over 8 years ago

10.1038/s41598-018-30477-8

Magnetic map navigation in a migratory songbird requires trigeminal input
Cited by: 34
Author(s): A. Yu. Pakhomov, Анна Анашина, Dominik Heyers, Dmitry Kobylkov, Henrik Mouritsen, Nikita Chernetsov
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0218149

RFQAmodel: Random Forest Quality Assessment to identify a predicted protein structure in the correct fold
Cited by: 3
Author(s): Clare E. West, Saulo H. P. de Oliveira, Charlotte Deane
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0219486

Caenorhabditis elegans hub genes that respond to amyloid beta are homologs of genes involved in human Alzheimer’s disease
Cited by: 14
Author(s): Rasoul Godini, Roger Pocock, Hossein Fallahi
Software Mentions: 3
Published: over 5 years ago

10.1002/ece3.3918

A new strategy to infer circularity applied to four new complete frog mitogenomes
Cited by: 14
Author(s): Denis Jacob Machado, Daniel Janies, Cory Brouwer, Taran Grant
Software Mentions: 3
Published: over 6 years ago

10.1038/srep41502

Conversion from long-term cultivated wheat field to Jerusalem artichoke plantation changed soil fungal communities
Cited by: 8
Author(s): Xingang Zhou, Jianhui Zhang, Danmei Gao, Huan Gao, Meiyu Guo, Li Li, Zhao MengLiang, Fengzhi Wu
Software Mentions: 3
Published: almost 8 years ago

10.1038/srep44804

Renal Medulla is More Sensitive to Cisplatin than Cortex Revealed by Untargeted Mass Spectrometry-Based Metabolomics in Rats
Cited by: 29
Author(s): Pei Zhang, Jiaqing Chen, Wanqiu Huang, Wei Li, Yin Huang, Zunjian Zhang, Fengguo Xu
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pcbi.1007411

Detecting distant-homology protein structures by aligning deep neural-network based contact maps
Cited by: 42
Author(s): Wei Zheng, Qiqige Wuyun, Yang Li, S. M. Mortuza, Chengxin Zhang, Robin Pearce, Jishou Ruan, Yang Zhang
Software Mentions: 2
Published: about 5 years ago

10.1002/ece3.5397

Does past evolutionary history under different mating regimes influence the demographic dynamics of interspecific competition?
Cited by: 6
Author(s): Daisuke Kyogoku, Michio Kondo, Teiji Sota
Software Mentions: 2
Published: over 5 years ago

10.7717/peerj.8196

DNA methylation profiling in recurrent miscarriage
Cited by: 3
Author(s): Li Pi, Zhaofeng Zhang, Yu Gu, Xinyue Wang, Jianmei Wang, Jianhua Xu, Junwei Liu, Xuan Zhang, Jing Du
Software Mentions: 2
Published: almost 5 years ago

10.3897/zookeys.783.26862

Two new species of Hydromedusae from Queensland, Australia (Hydrozoa, Leptothecata)
Cited by: 1
Author(s): Julian Uribe-Palomino, Sarah A. Pausina, Lisa‐Ann Gershwin
Software Mentions: 2
Published: about 6 years ago

10.1111/eva.12787

Tracking genetic invasions: Genome‐wide single nucleotide polymorphisms reveal the source of pyrethroid‐resistantAedes aegypti(yellow fever mosquito) incursions at international ports
Cited by: 37
Author(s): Thomas L. Schmidt, Anthony R. van Rooyen, Jessica Chung, Nancy M. Endersby‐Harshman, Philippa C. Griffin, Angus Sly, Ary A. Hoffmann, Andrew R. Weeks
Software Mentions: 2
Published: over 5 years ago

10.1002/1878-0261.12414

Targeting<scp>HER</scp>2 in patient‐derived xenograft ovarian cancer models sensitizes tumors to chemotherapy
Cited by: 22
Author(s): Frances Harris, Piyan Zhang, Lin Yang, Xiaonan Hou, Konstantinos Leventakos, S. John Weroha, George Vasmatzis, Irina V. Kovtun
Software Mentions: 2
Published: almost 6 years ago

10.3389/fpls.2016.01958

Global Scale Transcriptional Profiling of Two Contrasting Barley Genotypes Exposed to Moderate Drought Conditions: Contribution of Leaves and Crowns to Water Shortage Coping Strategies
Cited by: 12
Author(s): Pavel Svoboda, Anna Janská, Vojtěch Spiwok, Ilja Tom Prášil, Klára Kosová, Pavel Vítámvás, Jaroslava Ovesná
Software Mentions: 2
Published: almost 8 years ago

10.1186/1742-9994-7-14

Molluscan mega-hemocyanin: an ancient oxygen carrier tuned by a ~550 kDa polypeptide
Cited by: 28
Author(s): Bernhard Lieb, Wolfgang Gebauer, Christos Gatsogiannis, Frank Depoix, Nadja Hellmann, M. G. Harasewych, Ellen E. Strong, Jürgen Markl
Software Mentions: 2
Published: over 14 years ago

10.26508/lsa.202000823

CryoEM structure ofDrosophilaflight muscle thick filaments at 7 Å resolution
Cited by: 20
Author(s): Nadia Daneshparvar, David Taylor, Thomas S. O’Leary, Hamidreza Rahmani, Fatemeh Abbasiyeganeh, Michael J. Previs, Kenneth A. Taylor
Software Mentions: 2
Published: over 4 years ago

10.1007/s12263-015-0470-6

Network-based integration of molecular and physiological data elucidates regulatory mechanisms underlying adaptation to high-fat diet
Cited by: 7
Author(s): Davina Derous, Thomas Kelder, Evert M. van Schothorst, Marjan van Erk, Anja Voigt, К. Schimrigk, Jaap Keijer, Marijana Radonjić
Software Mentions: 2
Published: over 9 years ago

10.1186/1471-2105-13-2

ABrowse - a customizable next-generation genome browser framework
Cited by: 18
Author(s): Lei Kong, Jun Wang, Shuqi Zhao, Xiaocheng Gu, Jianxun Luo, Ge Gao
Software Mentions: 2
Published: almost 13 years ago

10.18632/aging.103982

Global burden and trend of acute lymphoblastic leukemia from 1990 to 2017
Cited by: 20
Author(s): Ming Yi, Linghui Zhou, An‐Ping Li, Suxia Luo, Zeyu Wu
Software Mentions: 2
Published: about 4 years ago

10.1186/s13326-019-0199-z

Integrating terminologies into standard SQL: a new approach for research on routine data
Cited by: 6
Author(s): André Sander, Roland R. Wauer
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-018-25912-9

A finely resolved phylogeny of Y chromosome Hg J illuminates the processes of Phoenician and Greek colonizations in the Mediterranean
Cited by: 9
Author(s): Andrea Finocchio, Beniamino Trombetta, Francesco Messina, Eugenia D’Atanasio, Nejat Akar, Aphrodite Loutradis, Emmanuel I. Michalodimitrakis, Fulvio Cruciani, Andrea Novelletto
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pgen.1008993

The Arabidopsis PHD-finger protein EDM2 has multiple roles in balancing NLR immune receptor gene expression
Cited by: 28
Author(s): Yan Liu, Xueqing Maggie Lu, Josquin Daron, Songqin Pan, Jianqiang Wang, Wei Wang, Tokuji Tsuchiya, Eric B. Holub, John M. McDowell, R. Keith Slotkin, Karine G. Le Roch, Thomas Eulgem
Software Mentions: 2
Published: about 4 years ago

10.1107/S205979832001061X

Density modification of cryo-EM maps
Cited by: 24
Author(s): Thomas C. Terwilliger, Oleg V. Sobolev, Pavel V. Afonine, Paul D. Adams, Randy J. Read
Software Mentions: 2
Published: about 4 years ago

10.1107/S2059798319009094

LAT1 (SLC7A5) and CD98hc (SLC3A2) complex dynamics revealed by single-particle cryo-EM
Cited by: 14
Author(s): George N. Chiduza, Rachel M. Johnson, Gareth S. A. Wright, S.V. Antonyuk, Stephen P. Muench, S.S. Hasnain
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-39475-w

Mixed stock analysis of juvenile green turtles aggregating at two foraging grounds in Fiji reveals major contribution from the American Samoa Management Unit
Cited by: 11
Author(s): Susanna Piovano, A. Batibasaga, Ana Ciriyawa, Erin L. LaCasella, Peter H. Dutton
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-016-3200-6

Comparative transcriptome profiling of two Brassica napus cultivars under chromium toxicity and its alleviation by reduced glutathione
Cited by: 68
Author(s): Rafaqat Ali Gill, Basharat Ali, Peng Cui, Enhui Shen, Muhammad Ahsan Farooq, Faisal Islam, Shafaqat Ali, Bizeng Mao, Weijun Zhou
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-019-49409-1

Exome Sequencing Reveals Immune Genes as Susceptibility Modifiers in Individuals with α1-Antitrypsin Deficiency
Cited by: 5
Author(s): Chiara Rigobello, Simonetta Baraldo, Mariaenrica Tinè, Ilaria Ferrarotti, Angelo Guido Corsico, Erica Bazzan, Graziella Turato, Elisabetta Balestro, Davide Biondini, Giorgio Valle, Marina Saetta, Manuel G. Cosio
Software Mentions: 1
Published: about 5 years ago

10.1016/j.dci.2020.103850

Molecular cloning and characterisation of chicken IL-18 binding protein
Cited by: 1
Author(s): Mark S. Gibson, Angela Steyn, David Kealy, Bernd Kaspers, Mark Fife
Software Mentions: 1
Published: almost 4 years ago

10.1007/s00125-017-4248-9

MicroRNA-184 is a downstream effector of albuminuria driving renal fibrosis in rats with diabetic nephropathy
Cited by: 51
Author(s): Cristina Zanchi, Daniela Macconi, Piera Trionfini, Susanna Tomasoni, Daniela Rottoli, Monica Locatelli, Michael Rudnicki, Jo Vandesompele, Pieter Mestdagh, Giuseppe Remuzzi, Ariela Benigni, Carla Zoja
Software Mentions: 1
Published: over 7 years ago

10.1186/s13550-016-0200-0

Impact of attenuation correction on clinical [18F]FDG brain PET in combined PET/MRI
Cited by: 12
Author(s): Peter Werner, Michael Rullmann, Anke Bresch, Solveig Tiepolt, Thies H. Jochimsen, Donald Lobsien, Matthias L. Schroeter, Osama Sabri, Henryk Barthel
Software Mentions: 1
Published: over 8 years ago

10.3390/s19163622

Pressure-Pair-Based Floor Localization System Using Barometric Sensors on Smartphones
Cited by: 4
Author(s): Chungheon Yi, Wonik Choi, Youngbae Jeon, Ling Liu
Software Mentions: 1
Published: over 5 years ago

10.3390/ijerph16245046

The Temporal and Spatial Evolution of Marathons in China from 2010 to 2018
Cited by: 12
Author(s): Yang Zuo, Liye Zou, Mu Zhang, Lee Smith, Lin Yang, Paul D. Loprinzi, Zhanbing Ren
Software Mentions: 1
Published: almost 5 years ago

10.1186/2041-1480-3-1

An ontology-based exploration of the concepts and relationships in the activities and participation component of the international classification of functioning, disability and health
Cited by: 22
Author(s): Vincenzo Della Mea, Andrea Simoncello
Software Mentions: 1
Published: almost 13 years ago

10.1016/j.celrep.2019.05.075

Two-Step Activation Mechanism of the ClpB Disaggregase for Sequential Substrate Threading by the Main ATPase Motor
Cited by: 40
Author(s): Célia Deville, Kamila B. Franke, Axel Mogk, Bernd Bukau, Helen R. Saibil
Software Mentions: 1
Published: over 5 years ago

10.1038/s41597-020-0562-z

A global dataset of surface water and groundwater salinity measurements from 1980–2019
Cited by: 38
Author(s): Josefin Thorslund, Michelle T. H. van Vliet
Software Mentions: 1
Published: over 4 years ago

10.3390/ijerph18189782

Exploring Spatial Variations in the Relationships between Landscape Functions and Human Activities in Suburban Rural Communities: A Case Study in Jiangning District, China
Cited by: 6
Author(s): Jie Zheng, Guodong Chen, Tiantian Zhang, Mingjing Ding, Binglin Liu, Hao Wang
Software Mentions: 1
Published: about 3 years ago

10.1186/2045-8118-9-20

Diffusion tensor imaging in elderly patients with idiopathic normal pressure hydrocephalus or Parkinson’s disease: diagnosis of gait abnormalities
Cited by: 34
Author(s): Kohei Marumoto, Tetsuo Koyama, Masashi Hosomi, Norihiko Kodama, Hiroji Miyake, Kazuhisa Domen
Software Mentions: 1
Published: almost 13 years ago

10.3389/fnhum.2016.00663

A Reduction in Delay Discounting by Using Episodic Future Imagination and the Association with Episodic Memory Capacity
Cited by: 20
Author(s): Xiaochen Hu, Helena Kleinschmidt, JA Martin, Ying Han, Manuela Thelen, Dix Meiberth, Frank Jessen, Bernd Weber
Software Mentions: 1
Published: almost 8 years ago

10.18632/oncotarget.24517

Etoposide-induced DNA damage affects multiple cellular pathways in addition to DNA damage response
Cited by: 12
Author(s): Fengxiang Wei, Hao Peng, Xiangzhong Zhang, Haiyan Hu, Dan Jiang, Aihua Yin, Liang Wen, Lihong Zheng, Jeffrey He, Wenjuan Mei, Hui Zeng, Damu Tang
Software Mentions: 1
Published: almost 7 years ago

10.3389/fpls.2017.01259

Global Gene Expression Analysis Reveals Crosstalk between Response Mechanisms to Cold and Drought Stresses in Cassava Seedlings
Cited by: 37
Author(s): Shuxia Li, Xiang Yu, Zhihao Cheng, Xiaoling Yu, Meiying Ruan, Wenbin Li, Ming Peng
Software Mentions: 1
Published: over 7 years ago

10.3389/fpsyg.2018.01689

Dietary Behavior: An Interdisciplinary Conceptual Analysis and Taxonomy
Cited by: 52
Author(s): F. Marijn Stok, Britta Renner, Julia Allan, Heiner Boeing, Regina Ensenauer, Sylvie Issanchou, Eva Kiesswetter, Nanna Lien, Mario Mazzocchi, Pablo Monsivais, Marta Stelmach-Mardas, Dorothee Volkert, Stefan Hoffmann
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0148679

Creative Activities in Music – A Genome-Wide Linkage Analysis
Cited by: 22
Author(s): Jaana Oikkonen, Tuire Kuusi, P. Peltonen, Pirre Raijas, Liisa Ukkola-Vuoti, Kai Karma, Päivi Onkamo, Irma Järvelä
Software Mentions: 1
Published: over 8 years ago

Projects: pypi: map

Papers Mentioning map 56