Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.12688/f1000research.15949.2

https://doi.org/10.12688/f1000research.15949.2

The Mega2R package: R tools for accessing and processing genetic data in common formats

Cited by: 0
Author(s): R. Baron, Justin R. Stickel, Daniel E. Weeks
Published: over 5 years ago

Software Mentions 12

bioconductor: GENESIS
GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzing genetic data from samples with population structure and/or relatedness
Papers that mentioned: 243
bioconductor: SeqArray
Data Management of Large-Scale Whole-Genome Sequence Variant Calls
Papers that mentioned: 8
bioconductor: SeqVarTools
Tools for variant data
Papers that mentioned: 4
bioconductor: SNPRelate
Parallel Computing Toolset for Relatedness and Principal Component Analysis of SNP Data
Papers that mentioned: 204
bioconductor: VariantAnnotation
Annotation of Genetic Variants
Papers that mentioned: 47
cran: Mega2R
Accessing and Processing a 'Mega2' Genetic Database
Papers that mentioned: 1
cran: pedgene
Gene-Level Variant Association Tests for Pedigree Data
Papers that mentioned: 2
cran: Rcpp
Seamless R and C++ Integration
Papers that mentioned: 152
cran: seqminer
Efficiently Read Sequence Data (VCF Format, BCF Format, METAL Format and BGEN Format) into R
Papers that mentioned: 4
cran: SKAT
SNP-Set (Sequence) Kernel Association Test
Papers that mentioned: 407
pypi: BitBucket
Papers that mentioned: 40
pypi: map
map applies a command to files/folders at a certain path.
Papers that mentioned: 56