Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1016/j.cell.2021.07.018

https://doi.org/10.1016/j.cell.2021.07.018

TDP-43 condensation properties specify its RNA-binding and regulatory repertoire

Cited by: 99
Author(s): Martina Hallegger, Anob M. Chakrabarti, Flora Lee, Bo Lim Lee, Aram Gustav Amalietti, Hana M. Odeh, Katie E. Copley, Jack D. Rubien, Bede Portz, Klara Kuret, Ina Huppertz, Frédérique Rau, Rickie Patani, Nicolas L. Fawzi, James Shorter, Nicholas M. Luscombe, Jernej Ule
Published: about 3 years ago

Software Mentions 6

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: DRIMSeq
Differential transcript usage and tuQTL analyses with Dirichlet-multinomial model in RNA-seq
Papers that mentioned: 17
bioconductor: tximport
Import and summarize transcript-level estimates for transcript- and gene-level analysis
Papers that mentioned: 367
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: map
map applies a command to files/folders at a certain path.
Papers that mentioned: 56
pypi: QuantStudio
Quant Studio
Papers that mentioned: 1,164