cran: EpiEstim | Projects | Ecosyste.ms: Papers

10.1186/s12874-020-01121-9

COVID19-world: a shiny application to perform comprehensive country-specific data visualization for SARS-CoV-2 epidemic
Cited by: 19
Author(s): Cristian Tebé, Joan Valls, Pau Satorra, Aurelio Tobías
Software Mentions: 13
Published: almost 4 years ago

10.1016/j.epidem.2014.04.003

OutbreakTools: A new platform for disease outbreak analysis using the R software
Cited by: 37
Author(s): Thibaut Jombart, David M. Aanensen, Marc Baguelin, Paul Birrell, Simon Cauchemez, Anton Camacho, Caroline Colijn, Caitlin Collins, Anne Cori, Xavier Didelot, Christophe Fraser, Simon D. W. Frost, Niel Hens, Joseph Hugues, Michael Höhle, Lulla Opatowski, Andrew Rambaut, Oliver Ratmann, Samuel Soubeyrand, Marc A. Suchard, Jacco Wallinga, Rolf J. F. Ypma, Neil M. Ferguson
Software Mentions: 11
Published: over 10 years ago

10.1093/cid/ciaa1130

The First 100 Days of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Control in Vietnam
Cited by: 49
Author(s): Phạm Quang Thái, Maia A. Rabaa, Duong Huy Luong, Dang Quang Tan, Tran Dai Quang, Ha-Linh Quach, Ngoc-Anh Hoang, Phung Cong Dinh, Ngu Duy Nghia, Trần Anh Tú, La Ngoc Quang, Tran My Phuc, Vinh Q. Chau, Nguyễn Công Khanh, Đặng Đức Anh, Trần Như Dương, Guy Thwaites, H. Rogier van Doorn, Marc Choisy, Mary Chambers, Marc Choisy, Jeremy Day, Dong Huu Khanh Trinh, Dong Thi Hoai Tam, Joseph Donovan, Du Hong Duc, Ronald B. Geskus, Ho Quang Chanh, Hien Ho Van, Huong Dang Thao, Huynh Le Anh Huy, Huynh Ngan Ha, Huynh Trung Trieu, H Yen, Evelyne Kestelyn, Thomas Kesteman, Lam Anh Nguyet, Lam Minh Yen, Katrina Lawson, Le Kim Thanh, Le Nguyen Truc Nhu, Le Thanh Hoang Nhat, Le Thi Hoang Lan, Tan Le Van, Sonia Lewycka, Nguyen Bao Tran, Nguyen Minh Nguyet, Nguyen Than Ha Quyen, Nguyen Thanh Ngoc, Nguyen Thi Han Ny, Nguyễn Thị Thương, Nguyễn Thị Huyền Trang, Nguyen Thi Kim Tuyen, Nguyen Thi Ngọc Diep, Nguyen Thi Dung, Nguyễn Thị Thanh Tâm, Nguyen Thi Thu Hong, Nguyễn Thu Trang, Vinh Chau Nguyen Van, Nguyen Xuan Truong, Ninh Thi Thanh Van, Phan Nguyen Quoc Khanh, Phung Khanh Lam, Phung Le Kim Yen, Phung Tran Huy Nhat, Maia A. Rabaa, Thuong Nguyen Thuy Thuong, Guy Thwaites, Louise Thwaites, Tran My Phuc, Tran Tan Thanh, Trần Thị Bích Ngọc, Tran Tinh Hien, Doorn H Rogier van, Nuil Jennifer van, Vinh Q. Chau, Vu Thi Bich, Vu Thi Ty Hang, Sophie Yacoub
Software Mentions: 6
Published: about 4 years ago

10.1371/journal.pcbi.1007271

Quantifying the roles of vomiting, diarrhea, and residents vs. staff in norovirus transmission in U.S. nursing home outbreaks
Cited by: 3
Author(s): Carly Adams, D. K. Young, Paul A. Gastañaduy, Prabasaj Paul, Zach Marsh, Aron J. Hall, Benjamin A. Lopman
Software Mentions: 4
Published: over 4 years ago

10.3390/v12070708

Early Phase of the COVID-19 Outbreak in Hungary and Post-Lockdown Scenarios
Cited by: 45
Author(s): Gergely Röst, F. Bartha, Norbert Bogya, Péter Boldog, Attila Dénes, Tamás Ferenci, Krisztina Horváth, Attila Juhász, Csilla Nagy, Tamás Tekeli, Zsolt Vizi, Beatrix Oroszi
Software Mentions: 3
Published: about 4 years ago

10.12688/wellcomeopenres.15843.2

Evidence of initial success for China exiting COVID-19 social distancing policy after achieving containment
Cited by: 61
Author(s): Kylie E. C. Ainslie, Caroline E. Walters, Han Fu, Sangeeta Bhatia, Haowei Wang, Xiaoyue Xi, Marc Baguelin, Samir Bhatt, Adhiratha Boonyasiri, Olivia Boyd, Lorenzo Cattarino, Constanze Ciavarella, Zulma M. Cucunubá, Gina Cuomo-Dannenburg, Amy Dighe, Ilaria Dorigatti, S Van Elsland, R Fitzjohn, Katy A. M. Gaythorpe, Azra C Ghani, Will Green, Arran Hamlet, Wes Hinsley, Natsuko Imai, David A. Jorgensen, Edward Knock, Daniel J Laydon, Gemma Nedjati-Gilani, Lucy Okell, Igor Siveroni, Hayley Thompson, H. Juliette T. Unwin, Robert Verity, Michaela Vollmer, Patrick Walker, Yuanrong Wang, Oliver J Watson, Charles Whittaker, Peter Winskill, Christl A. Donnelly, Neil Ferguson, Steven Riley
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.pone.0249037

A statistical analysis of the novel coronavirus (COVID-19) in Italy and Spain
Cited by: 46
Author(s): Jeffrey Chu
Software Mentions: 3
Published: over 3 years ago

10.3390/ijerph18094655

Relationship of Test Positivity Rates with COVID-19 Epidemic Dynamics
Cited by: 22
Author(s): Yuki Furuse, Yura K. Ko, Kota Ninomiya, Motoi Suzuki, Hitoshi Oshitani
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pcbi.1009211

A mechanistic and data-driven reconstruction of the time-varying reproduction number: Application to the COVID-19 epidemic
Cited by: 8
Author(s): Bernard Cazelles, Clara Champagne, Benjamin Nguyen-Van-Yen, Catherine Comiskey, Elisabeta Vergu, Benjamín Roche
Software Mentions: 3
Published: about 3 years ago

10.1371/journal.pbio.3000796

Repurposing the orphan drug nitisinone to control the transmission of African trypanosomiasis
Cited by: 12
Author(s): Marcos Sterkel, Lee R. Haines, Aitor Casas-Sánchez, Vincent O. Adung’a, Raquel J. Vionette-Amaral, Shannon Quek, Clair Rose, Mariana Silva dos Santos, Natalia García Escude, Hanafy M. Ismail, Mark J. I. Paine, Seth M. Barribeau, Simon C. Wagstaff, James I. MacRae, Daniel Masiga, Laith Yakob, Pedro L. Oliveira, Álvaro Acosta-Serrano
Software Mentions: 2
Published: over 3 years ago

10.3390/ijerph17093054

Early Transmission Dynamics of Novel Coronavirus (COVID-19) in Nigeria
Cited by: 70
Author(s): Oyelola A. Adegboye, Adeshina I. Adekunle, Ezra Gayawan
Software Mentions: 2
Published: over 4 years ago

10.4178/epih.e2020047

Time variant reproductive number of COVID-19 in Seoul, Korea
Cited by: 3
Author(s): Seong Geun Moon, Yeon Kyung Kim, Woo Sik Son, Jong Hoon Kim, Jungsoon Choi, Baeg Ju Na, Boyoung Park, Bo Youl Choi
Software Mentions: 2
Published: about 4 years ago

10.3390/ijerph18073834

Predicting the Dynamics of the COVID-19 Pandemic in the United States Using Graph Theory-Based Neural Networks
Cited by: 20
Author(s): Mohammad Reza Davahli, Krzysztof Fiok, Waldemar Karwowski, Awad M. Aljuaid, Redha Taı̈ar
Software Mentions: 2
Published: over 3 years ago

10.1093/infdis/jiy500

The Epidemiology of Cholera in Zanzibar: Implications for the Zanzibar Comprehensive Cholera Elimination Plan
Cited by: 9
Author(s): Qifang Bi, Fadhil Mohammed Abdalla, Salma Masauni, Rita Reyburn, M Msambazi, Carole Déglise, Lorenz von Seidlein, Jacqueline Deen, Mohamed Saleh Jiddawi, David M. Olson, Nemes Iriya, Jamala Adam Taib, Justin Lessler, Ghirmay Redae Andemichael, Andrew S. Azman
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pcbi.1008409

Practical considerations for measuring the effective reproductive number, Rt
Cited by: 313
Author(s): Katelyn M. Gostic, Lauren McGough, Edward B. Baskerville, Sam Abbott, Keya Joshi, Christine Tedijanto, Rebecca Kahn, René Niehus, James A. Hay, Pablo Salazar, Joel Hellewell, Sophie Meakin, James D. Munday, Nikos I. Bosse, Katharine Sherrat, Robin N Thompson, Laura F. White, Jana S. Huisman, Jérémie Scire, Sebastian Bonhoeffer, Tanja Stadler, Jacco Wallinga, Sebastian Funk, Marc Lipsitch, Sarah Cobey
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pcbi.1007990

Using information theory to optimise epidemic models for real-time prediction and estimation
Cited by: 40
Author(s): Kris V Parag, Christl A. Donnelly
Software Mentions: 2
Published: about 4 years ago

10.1111/irv.12467

Estimating and modelling the transmissibility of Middle East Respiratory Syndrome CoronaVirus during the 2015 outbreak in the Republic of Korea
Cited by: 23
Author(s): Xu‐Sheng Zhang, Richard Pebody, André Charlett, Daniela De Angelis, Paul Birrell, Hunseok Kang, Marc Baguelin, Yoon Hong Choi
Software Mentions: 2
Published: about 7 years ago

10.1001/jamanetworkopen.2020.16099

Association of Social Distancing, Population Density, and Temperature With the Instantaneous Reproduction Number of SARS-CoV-2 in Counties Across the United States
Cited by: 106
Author(s): David M. Rubin, Jing Huang, Brian T. Fisher, Antonio Gasparrini, Vicky Tam, Lihai Song, Xi Wang, Jason Kaufman, Kate Fitzpatrick, Arushi Jain, Heather Griffis, Koby Crammer, Jeffrey S. Morris, Gregory E. Tasian
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pcbi.1008679

Estimating the time-varying reproduction number of COVID-19 with a state-space method
Cited by: 23
Author(s): Shinsuke Koyama, Taiki Horie, Shigeru Shinomoto
Software Mentions: 2
Published: over 3 years ago

10.1186/s12879-021-06522-9

Transmission dynamics of SARS-CoV-2 in a mid-size city of China
Cited by: 5
Author(s): Hongjun Zhao, Xiaoxiao Lu, Wenhui Lun, Tiegang Li, Boqi Rao, Dedong Wang, Di Wu, Fuman Qiu, Zhicong Yang, Jiachun Lü
Software Mentions: 2
Published: about 3 years ago

10.1371/journal.pntd.0009418

The epidemiology of Mayaro virus in the Americas: A systematic review and key parameter estimates for outbreak modelling
Cited by: 21
Author(s): Edgar-Yaset Caicedo, Kelly Charniga, Amanecer Rueda, Ilaria Dorigatti, Yardany Rafael Méndez, Arran Hamlet, Jean-Paul Carrera, Zulma M. Cucunubá
Software Mentions: 2
Published: over 3 years ago

10.1186/s12889-021-10950-2

Differential impact of non-pharmaceutical public health interventions on COVID-19 epidemics in the United States
Cited by: 18
Author(s): Xiaoshuang Liu, Xing Xu, Guanqiao Li, Xian Xu, Ying Sun, Fei Wang, Xuanling Shi, Xiang Li, Guotong Xie, Linqi Zhang
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-92000-w

A multi-method approach to modeling COVID-19 disease dynamics in the United States
Cited by: 12
Author(s): Abdelmajid Soulaymani, Cameron Mineo, Jeffrey Kriseman, Pedro Kremer, Lauren Neal, John Larson
Software Mentions: 2
Published: over 3 years ago

10.1101/2020.06.18.20134858

Practical considerations for measuring the effective reproductive number, <i>R<sub>t</sub></i>
Cited by: 60
Author(s): Katelyn M. Gostic, Lauren McGough, Edward B. Baskerville, Sam Abbott, Keya Joshi, Christine Tedijanto, Rebecca Kahn, René Niehus, James A. Hay, Pablo Salazar, Joel Hellewell, Sophie Meakin, James D. Munday, Nikos I. Bosse, Katharine Sherrat, Robin N Thompson, Laura F. White, Jana S. Huisman, Jérémie Scire, Sebastian Bonhoeffer, Tanja Stadler, Jacco Wallinga, Sebastian Funk, Marc Lipsitch, Sarah Cobey
Software Mentions: 2
Published: about 4 years ago

10.1073/pnas.2012241117

Do face masks help? is not the question
Cited by: 4
Author(s): Qin Xiang Ng, Michelle Lee Zhi Qing De Deyn, Wee Song Yeo
Software Mentions: 1
Published: almost 4 years ago

10.21203/rs.3.rs-378425/v1

Quantifying The Relationship Between Lockdowns, Mobility, and Effective Reproduction Number (Rt) During The COVID-19 Pandemic in The Greater Toronto Area
Cited by: 1
Author(s): Christopher Dainton, Alexander Hay
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-021-88309-1

COVID-19 non-pharmaceutical intervention portfolio effectiveness and risk communication predominance
Cited by: 33
Author(s): Louis Yat Hin Chan, Baoyin Yuan, Matteo Convertino
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-021-92253-5

Inter-provincial disparity of COVID-19 transmission and control in Nepal
Cited by: 5
Author(s): Buddhi Pantha, Subas Acharya, Hem Raj Joshi, Naveen K. Vaidya
Software Mentions: 1
Published: about 3 years ago

10.1093/sysbio/syaa035

Adaptive Estimation for Epidemic Renewal and Phylogenetic Skyline Models
Cited by: 27
Author(s): Kris V Parag, Christl A. Donnelly
Software Mentions: 1
Published: over 4 years ago

10.1101/2021.04.23.21255958

Estimation of local time-varying reproduction numbers in noisy surveillance data
Cited by: 1
Author(s): Wei Li, Katia Bulekova, Brian Gregor, Laura F. White, Kolaczyk Ed
Software Mentions: 1
Published: over 3 years ago

10.2196/22678

Transmission Dynamics of the COVID-19 Epidemic at the District Level in India: Prospective Observational Study
Cited by: 11
Author(s): Suman Saurabh, Mahendra Kumar Verma, Vaishali Gautam, Nitesh Kumar, Akhil Dhanesh Goel, Manoj Kumar Gupta, Pankaj Bhardwaj, Sanjeev Misra
Software Mentions: 1
Published: almost 4 years ago

10.2196/21340

Social Media as an Early Proxy for Social Distancing Indicated by the COVID-19 Reproduction Number: Observational Study
Cited by: 14
Author(s): Joseph Younis, Harvy Freitag, Jeremy S Ruthberg, Jonathan P Romanes, Craig Nielsen, Neil Mehta
Software Mentions: 1
Published: almost 4 years ago

10.3390/ijerph18062826

Reduction of Human Mobility Matters during Early COVID-19 Outbreaks: Evidence from India, Japan and China
Cited by: 2
Author(s): Zhehao Ren, Ruiyun Li, Tao Zhang, Bin Chen, Wang Che, Miao Li, Shuang Song, Xiao Ying, Bo Xu, Zhaoyang Liu, Chong Shen, Dabo Guan, Lin Hou, Ke Deng, Yuqi Bai, Peng Gong, Bing Xu
Software Mentions: 1
Published: over 3 years ago

10.3390/ijerph18063273

Measuring Time-Varying Effective Reproduction Numbers for COVID-19 and Their Relationship with Movement Control Order in Malaysia
Cited by: 8
Author(s): Kamarul Imran Musa, Wan Nor Arifin, Mohd Hafiz Mohd, Mohammad Subhi Jamiluddin, Noor Hazlina Ahmad, Xin Wee Chen, Tengku Muhammad Hanis, Awang Bulgiba
Software Mentions: 1
Published: over 3 years ago

10.3390/ijerph18105358

Health Sufficiency Indicators for Pandemic Monitoring
Cited by: 4
Author(s): Javier M. Moguerza, Salvador Perelló Oliver, Isaac Martín de Diego, Víctor Aceña, Carmen Lancho, Carmen Lancho, César González-Fernández
Software Mentions: 1
Published: over 3 years ago

10.2196/24389

Adaptive Susceptible-Infectious-Removed Model for Continuous Estimation of the COVID-19 Infection Rate and Reproduction Number in the United States: Modeling Study
Cited by: 12
Author(s): Mark B. Shapiro, Fazle Karim, Guido Muscioni, Abel Saju Augustine
Software Mentions: 1
Published: over 3 years ago

10.1007/s15010-020-01420-9

SARS-CoV-2 and Europe: timing of containment measures for outbreak control
Cited by: 23
Author(s): Chenyu Li, Paola Romagnani, Albrecht von Brunn, Hans‐Joachim Anders
Software Mentions: 1
Published: over 4 years ago

10.1186/s12879-021-06204-6

Transmission dynamics and control of two epidemic waves of SARS-CoV-2 in South Korea
Cited by: 33
Author(s): Sukhyun Ryu, Sheikh Taslim Ali, Eunbi Noh, Dasom Kim, Eric H. Y. Lau, Benjamin J. Cowling
Software Mentions: 1
Published: over 3 years ago

10.1186/s12879-020-05577-4

Estimating transmission dynamics and serial interval of the first wave of COVID-19 infections under different control measures: a statistical analysis in Tunisia from February 29 to May 5, 2020
Cited by: 18
Author(s): Khouloud Talmoudi, Mouna Safer, Hejer Letaief, Aicha Hchaichi, Chahida Harizi, Sonia Dhaouadi, Sondes Derouiche, Ilhem Bouaziz, Donia Gharbi, Nourhene Najar, Molka Osman, Ines Cherif, Rym Mlallekh, Oumaima Ben-Ayed, Yosr Ayedi, Leila Bouabid, Souha Bougatef, Nissaf Bouafif ép Ben-Alaya, Mohamed Kouni Chahed
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12916-021-02016-2

Using syndromic measures of mortality to capture the dynamics of COVID-19 in Java, Indonesia, in the context of vaccination rollout
Cited by: 7
Author(s): Bimandra A Djaafara, Charles Whittaker, Oliver Watson, Robert Verity, Nicholas F. Brazeau, Widyastuti, Dwi Oktavia, Verry Adrian, Ngabila Salama, Sangeeta Bhatia, Pierre Nouvellet, Ellie Sherrard-Smith, Thomas S Churcher, Henry Surendra, Rosa N Lina, Lenny L. Ekawati, Karina D Lestari, Adhi Andrianto, Guy Thwaites, J. Kevin Baird, Azra C Ghani, Iqbal Elyazar, Patrick Walker
Software Mentions: 1
Published: about 3 years ago

10.1186/s12916-020-01791-8

Response to COVID-19 in South Korea and implications for lifting stringent interventions
Cited by: 127
Author(s): Amy Dighe, Lorenzo Cattarino, Gina Cuomo-Dannenburg, Janetta Skarp, Natsuko Imai, Sangeeta Bhatia, Katy A. M. Gaythorpe, Kylie E. C. Ainslie, Marc Baguelin, Samir Bhatt, Adhiratha Boonyasiri, Nicholas F. Brazeau, Laura V Cooper, Helen Coupland, Zulma M. Cucunubá, Ilaria Dorigatti, Oliver Eales, S Van Elsland, Richard G. FitzJohn, William D. Green, David Haw, Wes Hinsley, Edward Knock, Daniel J. Laydon, Thomas A. Mellan, Swapnil Mishra, Gemma Nedjati-Gilani, Pierre Nouvellet, Margarita Pons-Salort, Hayley Thompson, H. Juliette T. Unwin, Robert Verity, Michaela Vollmer, Caroline E. Walters, Oliver J Watson, Charles Whittaker, Lilith K Whittles, Azra C Ghani, Christl A. Donnelly, Neil Ferguson, Steven Riley
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12916-020-01574-1

Dynamics of conflict during the Ebola outbreak in the Democratic Republic of the Congo 2018–2019
Cited by: 17
Author(s): Moritz U. G. Kraemer, David M. Pigott, Sarah C. Hill, Samantha Vanderslott, Robert C. Reiner, Stephanie Stasse, John S. Brownstein, Bernardo Gutierrez, Francis Dennig, Simon I. Hay, G. R. William Wint, Oliver G. Pybus, Márcia C. Castro, Patrick Vinck, Phuong Pham, Eric J. Nilles, Simon Cauchemez
Software Mentions: 1
Published: over 4 years ago

10.1186/s12889-021-11684-x

Quantifying the relationship between lockdowns, mobility, and effective reproduction number (Rt) during the COVID-19 pandemic in the Greater Toronto Area
Cited by: 6
Author(s): Christopher Dainton, Alexander Hay
Software Mentions: 1
Published: about 3 years ago

10.1186/s12985-020-01411-0

Estimation of the basic reproduction number (R0) for the novel coronavirus disease in Sri Lanka
Cited by: 36
Author(s): Samath D Dharmaratne, Supun Sudaraka, Ishanya Ayeshini Abeyagunawardena, Kasun Manchanayake, M. Kothalawala, Wasantha Gunathunga
Software Mentions: 1
Published: almost 4 years ago

10.7717/peerj.9879

Estimating the impact of mobility patterns on COVID-19 infection rates in 11 European countries
Cited by: 38
Author(s): Patrick Bryant, Arne Elofsson
Software Mentions: 1
Published: about 4 years ago

10.7717/peerj.10992

Sensitivity analysis of the infection transmissibility in the UK during the COVID-19 pandemic
Cited by: 4
Author(s): Pardis Biglarbeigi, Kok Yew Ng, Dewar Finlay, Raymond Bond, Min Jing, James McLaughlin
Software Mentions: 1
Published: over 3 years ago

10.1098/rstb.2020.0280

Estimates of regional infectivity of COVID-19 in the United Kingdom following imposition of social distancing measures
Cited by: 10
Author(s): Robert Challen, Krasimira Tsaneva-Atanasova, Martin Pitt, Thomas L. Edwards, Luke Gompels, Lucas Lacasa, Ellen Brooks-Pollock, León Danon
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pcbi.1008684

Dynamics of COVID-19 under social distancing measures are driven by transmission network structure
Cited by: 60
Author(s): Anjalika Nande, Ben Adlam, Justin Sheen, Michael Z. Levy, Alison L. Hill
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pcbi.1009210

Bayesian back-calculation and nowcasting for line list data during the COVID-19 pandemic
Cited by: 18
Author(s): Tenglong Li, Laura F. White
Software Mentions: 1
Published: about 3 years ago

10.1371/journal.pcbi.1009347

Improved estimation of time-varying reproduction numbers at low case incidence and between epidemic waves
Cited by: 40
Author(s): Kris V Parag
Software Mentions: 1
Published: about 3 years ago

10.1371/journal.pone.0253925

Optimizing COVID-19 vaccine distribution across the United States using deterministic and stochastic recurrent neural networks
Cited by: 12
Author(s): Mohammad Reza Davahli, Waldemar Karwowski, Krzysztof Fiok
Software Mentions: 1
Published: about 3 years ago

10.1371/journal.pone.0255873

Impact of physical distancing policy on reducing transmission of SARS-CoV-2 globally: Perspective from government’s response and residents’ compliance
Cited by: 23
Author(s): Ping-Chen Chung, Ta‐Chien Chan
Software Mentions: 1
Published: about 3 years ago

10.1093/cid/ciaa1599

A Comparative Analysis of Statistical Methods to Estimate the Reproduction Number in Emerging Epidemics, With Implications for the Current Coronavirus Disease 2019 (COVID-19) Pandemic
Cited by: 25
Author(s): Megan O’Driscoll, Carole Harry, Christl A. Donnelly, Anne Cori, Ilaria Dorigatti
Software Mentions: 1
Published: almost 4 years ago

10.1017/dmp.2021.78

SARS-CoV-2 Transmission in Alberta, British Columbia, and Ontario, Canada, December 25, 2019, to December 1, 2020
Cited by: 5
Author(s): Isaac Chun Hai Fung, Yuen Wai Hung, Sylvia K. Ofori, Kamalich Muniz-Rodriguez, Po Ying Lai, Gerardo Chowell
Software Mentions: 1
Published: over 3 years ago

10.1017/exp.2021.4

Weather variability and transmissibility of COVID-19: a time series analysis based on effective reproductive number
Cited by: 7
Author(s): Xiaohan Si, Hilary Bambrick, Yuzhou Zhang, Jian Cheng, Hannah McClymont, Michael B. Bonsall, Wenbiao Hu
Software Mentions: 1
Published: over 3 years ago

10.3389/fdata.2020.00026

Novel Criteria for When and How to Exit a COVID-19 Pandemic Lockdown
Cited by: 4
Author(s): Chenyu Li, Paola Romagnani, Hans‐Joachim Anders
Software Mentions: 1
Published: about 4 years ago

10.3389/fpubh.2020.577431

Serial Interval and Generation Interval for Imported and Local Infectors, Respectively, Estimated Using Reported Contact-Tracing Data of COVID-19 in China
Cited by: 21
Author(s): Menghui Li, Kai Li, Yukun Song, Wang Ming, Jinshan Wu
Software Mentions: 1
Published: over 3 years ago

10.4269/ajtmh.20-0771

Epidemiological Investigation of the First 135 COVID-19 Cases in Brunei: Implications for Surveillance, Control, and Travel Restrictions
Cited by: 23
Author(s): Justin Wong, Liling Chaw, Wee Chian Koh, Mohammad Fathi Alikhan, Sirajul Adli Jamaludin, Wan Wen Patricia Poh, Lin Naing
Software Mentions: 1
Published: almost 4 years ago

10.1200/GO.20.00156

Mortality and Advanced Support Requirement for Patients With Cancer With COVID-19: A Mathematical Dynamic Model for Latin America
Cited by: 10
Author(s): Alejandro Ruíz-Patiño, Óscar Arrieta, Luis Eduardo Pino, Christian Rolfo, Luisa Ricaurte, Gonzálo Recondo, Zyanya-Lucia Zatarain-Barron, Luis Corrales, Claudio Martín, Feliciano Barrón, Carlos Vargas, Hernán Carranza, Jorge Otero, July Rodríguez, Carolina Sotelo, Lucia Viola, Alessandro Russo, R. Rosell, Andrés Felipe Cardona
Software Mentions: 1
Published: almost 4 years ago

10.1073/pnas.2011548118

Forward-looking serial intervals correctly link epidemic growth to reproduction numbers
Cited by: 46
Author(s): Sang Woo Park, Kaiyuan Sun, David Champredon, Michael Li, Benjamin M. Bolker, David J. D. Earn, Joshua S. Weitz, Bryan T. Grenfell, Jonathan Dushoff
Software Mentions: 1
Published: over 3 years ago

Projects: cran: EpiEstim

Papers Mentioning EpiEstim 60