Ecosyste.ms: Papers

10.1155/2014/687346

Models and Frameworks: A Synergistic Association for Developing Component-Based Applications
Cited by: 1
Author(s): Diego Alonso, Francisco Sánchez-Ledesma, Pedro Sánchez, Javier Pastor, Bárbara Álvarez
Software Mentions: 3
Published: almost 11 years ago

10.1186/1471-2105-9-507

MetaboMiner – semi-automated identification of metabolites from 2D NMR spectra of complex biofluids
Cited by: 169
Author(s): Jianguo Xia, Trent C. Bjorndahl, Peter Tang, David S. Wishart
Software Mentions: 3
Published: almost 16 years ago

10.1038/s41598-017-03121-0

Echo-Planar J-resolved Spectroscopic Imaging using Dual Read-outs: Implementation and Quantitation of Human Brain Metabolites
Cited by: 4
Author(s): Manoj K. Sarma, Rajakumar Nagarajan, Zohaib Iqbal, Paul M. Macey, M. Albert Thomas
Software Mentions: 3
Published: over 7 years ago

10.1155/2019/2728786

Purinergic Signaling Pathway in Human Olfactory Neuronal Precursor Cells
Cited by: 2
Author(s): Héctor Solís‐Chagoyán, Edgar Flores‐Soto, Marcela Valdés-Tovar, Montserrat G. Cercós, Eduardo Calixto, Luis M. Montaño, Carlos Barajas‐López, Bettina Sommer, Arnoldo Aquino‐Gálvez, Citlali Trueta, Gloria Benítez‐King
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0023582

Flanking Bases Influence the Nature of DNA Distortion by Platinum 1,2-Intrastrand (GG) Cross-Links
Cited by: 18
Author(s): Debadeep Bhattacharyya, Srinivas Ramachandran, Sanjai Sharma, Wimal Pathmasiri, Candice L. King, Irene Abraham, Gunnar Boysen, James A. Swenberg, Sharon L. Campbell, Nikolay V. Dokholyan, Stephen G. Chaney
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0019510

Insight into the Interaction of Metal Ions with TroA from Streptococcus suis
Cited by: 52
Author(s): Beiwen Zheng, Qiangmin Zhang, Jia Gao, Haitao Han, Ming Li, Jing-Ren Zhang, Jianxun Qi, Jinghua Yan, George F. Gao
Software Mentions: 2
Published: over 13 years ago

10.1038/srep33776

Helical unwinding and side-chain unlocking unravel the outward open conformation of the melibiose transporter
Cited by: 1
Author(s): Li-Ying Wang, Vidhya Ravi, Gérard Leblanc, Esteve Padrós, Josep Cladera, Àlex Perálvarez-Marín
Software Mentions: 2
Published: about 8 years ago

10.1051/parasite/2019079

Effects of cholesterol content on activity of P-glycoproteins and membrane physical state, and consequences for anthelmintic resistance in the nematode<i>Haemonchus contortus</i>
Cited by: 4
Author(s): Mickaël Riou, Fabrice Guégnard, Yves Le Vern, Isabelle Grasseau, Christine Koch, Élisabeth Blesbois, Dominique Kerbœuf
Software Mentions: 1
Published: almost 5 years ago

10.1007/s00424-016-1840-7

G protein-coupled estrogen receptor inhibits the P2Y receptor-mediated Ca2+ signaling pathway in human airway epithelia
Cited by: 7
Author(s): Yuan Hao, Alison W. Chow, Wing Ho Yip, Chi H. Li, Tai F. Wan, Benjamin Chun‐Kit Tong, Kmc Cheung, Wood Yee Chan, Yangchao Chen, Cheng Chen, Wing‐Hung Ko
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0038512

Folding Circular Permutants of IL-1β: Route Selection Driven by Functional Frustration
Cited by: 20
Author(s): Dominique T. Capraro, Shachi Gosavi, M. Roy, José N. Onuchic, Patricia A. Jennings
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0042948

Guanidine-HCl Dependent Structural Unfolding of M-Crystallin: Fluctuating Native State Like Topologies and Intermolecular Association
Cited by: 4
Author(s): Ravi Pratap Barnwal, Geetika Agarwal, Kandala V. R. Chary
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0121634

Dissecting out the Complex Ca2+-Mediated Phenylephrine-Induced Contractions of Mouse Aortic Segments
Cited by: 40
Author(s): Paul Fransen, Cor E. Van Hove, Arthur Leloup, Wim Martinet, Guido R.Y. De Meyer, Katrien Lemmens, Hidde Bult, Dorien M. Schrijvers
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0012872

Light Chain Separated from the Rest of the Type A Botulinum Neurotoxin Molecule Is the Most Catalytically Active Form
Cited by: 19
Author(s): Nizamettin Gul, Leonard A. Smith, S. Ashraf Ahmed
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0030109

NMR Derived Model of GTPase Effector Domain (GED) Self Association: Relevance to Dynamin Assembly
Cited by: 1
Author(s): Swagata Chakraborty, Supriya Pratihar, Ramakrishna V. Hosur
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0057062

Functional Rescue of a Kidney Anion Exchanger 1 Trafficking Mutant in Renal Epithelial Cells
Cited by: 12
Author(s): Carmen Chu, Jennifer C. King, Mattia Berrini, R. Todd Alexander, Emmanuelle Cordat
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0060940

A Comparative Study of Interaction of Tetracycline with Several Proteins Using Time Resolved Anisotropy, Phosphorescence, Docking and FRET
Cited by: 28
Author(s): Manini Mukherjee, Pinki Saha Sardar, Shyamal Kr Ghorai, Swarna Kamal Samanta, Atanu Singha Roy, Swagata Dasgupta, Sanjib Ghosh
Software Mentions: 1
Published: over 11 years ago

10.1038/cddiscovery.2015.37

DIDS (4,4'-Diisothiocyanatostilbene-2,2'-disulfonate) directly inhibits caspase activity in HeLa cell lysates
Cited by: 18
Author(s): Edaena Benítez-Rangel, MC López-Méndez, Lucı́a Garcı́a, Agustı́n Guerrero-Hernández
Software Mentions: 1
Published: about 9 years ago

10.1007/s00330-020-07502-4

Intra-tumoural lipid composition and lymphovascular invasion in breast cancer via non-invasive magnetic resonance spectroscopy
Cited by: 15
Author(s): Sai Man Cheung, Ehab Husain, Vasiliki Mallikourti, Yazan Masannat, Steven Darryll Heys, Jiabao He
Software Mentions: 1
Published: almost 4 years ago

10.3389/fnmol.2012.00094

Mapping local structural perturbations in the native state of stefin B (cystatin B) under amyloid forming conditions
Cited by: 6
Author(s): Robert Paramore, Gareth J. Morgan, Peter J. Davis, Carrie-anne Sharma, Andrea M. Hounslow, Ajda Taler‐Verčič, Eva Žerovnik, Jonathan P. Waltho, Matthew J. Cliff, Rosemary A. Staniforth
Software Mentions: 1
Published: almost 13 years ago

10.3389/fphar.2019.00037

Polypeptide Nanogels With Different Functional Cores Promote Chemotherapy of Lung Carcinoma
Cited by: 4
Author(s): Kai Niu, Nan Li, Yunming Yao, Chunjie Guo, Yuanyuan Ge, Jianmeng Wang
Software Mentions: 1
Published: almost 6 years ago

10.3389/fphar.2017.00756

The AMP-Dependent Protein Kinase (AMPK) Activator A-769662 Causes Arterial Relaxation by Reducing Cytosolic Free Calcium Independently of an Increase in AMPK Phosphorylation
Cited by: 9
Author(s): Yi Huang, Corey A. Smith, Grace Chen, Bharti Sharma, Amy S. Miner, R. Wayne Barbee, Paul H. Ratz
Software Mentions: 1
Published: about 7 years ago

10.3389/fphys.2020.00282

Contractile Behavior of Mouse Aorta Depends on SERCA2 Isoform Distribution: Effects of Replacing SERCA2a by SERCA2b
Cited by: 4
Author(s): Paul Fransen, Jialin Chen, Peter Vangheluwe, Pieter-Jan Guns
Software Mentions: 1
Published: over 4 years ago

10.3389/fphys.2013.00399

Loss of the AE3 Cl−/HCO−3 exchanger in mice affects rate-dependent inotropy and stress-related AKT signaling in heart
Cited by: 10
Author(s): Vikram Prasad, John N. Lorenz, Valerie M. Lasko, Michelle L. Nieman, Nabeel J. Al Moamen, Gary E. Shull
Software Mentions: 1
Published: almost 12 years ago

10.1111/jcmm.12554

<scp>CXCR</scp> 4 attenuates cardiomyocytes mitochondrial dysfunction to resist ischaemia‐reperfusion injury
Cited by: 15
Author(s): Wenfeng Cai, Kai Kang, Wei Huang, Jialiang Liang, Yuliang Feng, Guansheng Liu, Dehua Chang, Zhiyuan Wen, Christian Paul, Meifeng Xu, Ronald W. Millard, Yigang Wang
Software Mentions: 1
Published: over 9 years ago

10.1080/14756366.2019.1608981

Evaluation of the published kinase inhibitor set to identify multiple inhibitors of bacterial ATP-dependent mur ligases
Cited by: 9
Author(s): Martina Hrast, Kaja Rožman, Iza Ogris, Veronika Škedelj, Delphine Patin, Matej Sova, Hélène Barreteau, Stanislav Gobec, Simona Golič Grdadolnik, Anamarija Zega
Software Mentions: 1
Published: almost 6 years ago

10.3390/polym8040165

Stereocomplex-Reinforced PEGylated Polylactide Micelle for Optimized Drug Delivery
Cited by: 17
Author(s): Chong Feng, Meihua Piao, Di Li
Software Mentions: 1
Published: over 8 years ago

10.3390/polym8020036

l-Cystine-Crosslinked Polypeptide Nanogel as a Reduction-Responsive Excipient for Prostate Cancer Chemotherapy
Cited by: 22
Author(s): Liang He, Di Li, Zhongtang Wang, Weiguo Xu, Jixue Wang, Hui Guo, Handong Wang, Jianxun Ding
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep18906

DSF Guided Refolding As A Novel Method Of Protein Production
Cited by: 23
Author(s): Amadeo B. Biter, Andres H. de la Peña, Roopa Thapar, Jean Z. Lin, Kevin J. Phillips
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-019-39430-9

The kidney anion exchanger 1 affects tight junction properties via claudin-4
Cited by: 10
Author(s): Rawad Lashhab, Alina C. Rumley, Denis Arutyunov, Midhat Rizvi, Charlotte You, Henrik Dimke, Nicolas Touret, Richard Zimmermann, Martin Jung, Xing-Zhen Chen, Todd Alexander, Emmanuelle Cordat
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-47824-y

The lipid-dependent structure and function of LacY can be recapitulated and analyzed in phospholipid-containing detergent micelles
Cited by: 6
Author(s): Heidi Vitrac, Venkata Mallampalli, Mikhail Bogdanov, William Dowhan
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-52637-0

Computational and NMR studies of RNA duplexes with an internal pseudouridine-adenosine base pair
Cited by: 23
Author(s): Indrajit Deb, Łukasz Popenda, Joanna Sarzyńska, Magdalena Małgowska, Ansuman Lahiri, Zofia Gdaniec, Ryszard Kierzek
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-54933-1

Two New Fucose-α (1–2)-Glycans Assigned In The Healthy Human Brain Taking The Number To Seven
Cited by: 9
Author(s): Nathan Tosh, Scott Quadrelli, Graham J. Galloway, Carolyn E. Mountford
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-66903-z

Age, Sex and Overall Health, Measured As Frailty, Modify Myofilament Proteins in Hearts From Naturally Aging Mice
Cited by: 12
Author(s): Alice E. Kane, Elise S Bisset, Kaitlyn Keller, Anjali Ghimire, W. Glen Pyle, Susan E. Howlett
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-77949-4

Nonreciprocal elasticity and the realization of static and dynamic nonreciprocity
Cited by: 5
Author(s): Mohamed Shaat
Software Mentions: 1
Published: almost 4 years ago

10.1155/2013/536350

Involvement of MAPKs and PLC Pathways in Modulation of Pacemaking Activity by So-Cheong-Ryong-Tang in Interstitial Cells of Cajal from Murine Small Intestine
Cited by: 5
Author(s): Min-Woo Hwang, Hee Jung Lee, Ho Joon Song, Byung Joo Kim
Software Mentions: 1
Published: almost 12 years ago

10.3390/s110606214

Interfacial Chemistry and the Design of Solid-Phase Nucleic Acid Hybridization Assays Using Immobilized Quantum Dots as Donors in Fluorescence Resonance Energy Transfer
Cited by: 37
Author(s): W. Russ Algar, Ulrich J. Krull
Software Mentions: 1
Published: over 13 years ago

10.1038/s41398-018-0365-6

Post-traumatic stress disorder affects fucose-α(1–2)-glycans in the human brain: preliminary findings of neuro deregulation using in vivo two-dimensional neuro MR spectroscopy
Cited by: 5
Author(s): Scott Quadrelli, Nathan Tosh, Aaron Urquhart, Katie Trickey, Rosanna Tremewan, Graham J. Galloway, Lisa Rich, Rodney Arthur Lea, Peter Malycha, Carolyn E. Mountford
Software Mentions: 1
Published: almost 6 years ago

10.1016/j.jmb.2009.09.025

The Human α-Lactalbumin Molten Globule: Comparison of Structural Preferences at pH 2 and pH 7
Cited by: 34
Author(s): Heike I. Rösner, Christina Redfield
Software Mentions: 1
Published: about 15 years ago

10.7554/eLife.13429

Kinetics of initiating polypeptide elongation in an IRES-dependent system
Cited by: 24
Author(s): Haibo Zhang, Martin Ng, Yuanwei Chen, Barry S. Cooperman
Software Mentions: 1
Published: over 8 years ago

10.7554/eLife.08146

A dynamic RNA loop in an IRES affects multiple steps of elongation factor-mediated translation initiation
Cited by: 22
Author(s): Marisa D Ruehle, Haibo Zhang, Ryan M. Sheridan, Subhasish Mitra, Yuanwei Chen, Ruben L. Gonzalez, Barry S. Cooperman, Jeffrey S. Kieft
Software Mentions: 1
Published: about 9 years ago

10.3390/ijms17060941

Voltage-Activated Calcium Channels as Functional Markers of Mature Neurons in Human Olfactory Neuroepithelial Cells: Implications for the Study of Neurodevelopment in Neuropsychiatric Disorders
Cited by: 6
Author(s): Héctor Solís‐Chagoyán, Edgar Flores‐Soto, Jorge Reyes‐García, Marcela Valdés-Tovar, Eduardo Calixto, Luis M. Montaño, Gloria Benítez‐King
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms21207566

Characterization of Asparagine Deamidation in Immunodominant Myelin Oligodendrocyte Glycoprotein Peptide Potential Immunotherapy for the Treatment of Multiple Sclerosis
Cited by: 5
Author(s): Maria-Eleni Androutsou, Agathi Nteli, Areti Gkika, Maria Avloniti, Anastasia Dagkonaki, Lesley Probert, Theodore Tselios, Simona Golič Grdadolnik
Software Mentions: 1
Published: about 4 years ago

10.1186/1742-2094-5-37

Neuro-inflammation induced by lipopolysaccharide causes cognitive impairment through enhancement of beta-amyloid generation
Cited by: 603
Author(s): Jae Woong Lee, Yong Kyung Lee, Dong Yeon Yuk, Dong Young Choi, Sang Bae Ban, Ki Wan Oh, Jin Tae Hong
Software Mentions: 1
Published: about 16 years ago

10.1186/1742-2094-9-35

Inhibitory effect of 4-O-methylhonokiol on lipopolysaccharide-induced neuroinflammation, amyloidogenesis and memory impairment via inhibition of nuclear factor-kappaB in vitro and in vivo models
Cited by: 116
Author(s): Young-Jung Lee, Dong‐Young Choi, Im Seop Choi, Ki Ho Kim, Young Hee Kim, Hwan Mook Kim, Kiho Lee, Won Gil Cho, Jea Kyung Jung, Sang Bae Han, Jin-Yi Han, Sang-Yoon Nam, Young Won Yun, Jae Hwang Jeong, Ki‐Wan Oh, Jin Tae Hong
Software Mentions: 1
Published: almost 13 years ago

10.1186/1742-2094-11-118

Inhibitory effect of ent-Sauchinone on amyloidogenesis via inhibition of STAT3-mediated NF-κB activation in cultured astrocytes and microglial BV-2 cells
Cited by: 35
Author(s): Seung-Ho Song, Yu Yeon Jung, Chul Ju Hwang, Hee Peom Lee, Chang Hyun Sok, Joo Hwan Kim, Sang Min Lee, Hyun Ok Seo, Byung Kook Hyun, Dong Young Choi, Sang Bae Han, Young Wan Ham, Bang Yeon Hwang, Jin Tae Hong
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12974-015-0344-2

Bee venom ameliorates lipopolysaccharide-induced memory loss by preventing NF-kappaB pathway
Cited by: 50
Author(s): Sun Mi Gu, Mi Hee Park, Chul Ju Hwang, Ho Sueb Song, Ung Soo Lee, Sang Bae Han, Ki Wan Oh, Young Wan Ham, Min Jong Song, Dong Ju Son, Jin Tae Hong
Software Mentions: 1
Published: over 9 years ago

10.1186/1742-2094-8-132

Inhibitory effect of a tyrosine-fructose Maillard reaction product, 2,4-bis(p-hydroxyphenyl)-2-butenal on amyloid-β generation and inflammatory reactions via inhibition of NF-κB and STAT3 activation in cultured astrocytes and microglial BV-2 cells
Cited by: 39
Author(s): Young-Jung Lee, Dong‐Young Choi, Im Seup Choi, Jin-Yi Han, Heon‐Sang Jeong, Sang Bae Han, Ki‐Wan Oh, Jin Tae Hong
Software Mentions: 1
Published: about 13 years ago

10.1186/1742-2094-10-2

Anti-inflammatory and anti-amyloidogenic effects of a small molecule, 2,4-bis(p-hydroxyphenyl)-2-butenal in Tg2576 Alzheimer’s disease mice model
Cited by: 36
Author(s): Peng Jin, Jina Kim, Dong‐Young Choi, Young-Jung Lee, Heon Sang Jung, Jin Tae Hong
Software Mentions: 1
Published: almost 12 years ago

10.18632/oncotarget.19818

KRICT-9 inhibits neuroinflammation, amyloidogenesis and memory loss in Alzheimer’s disease models
Cited by: 8
Author(s): Doyeon Lee, Chul Ju Hwang, Ji Yeon Choi, Mi Hee Park, Min Song, Ki Wan Oh, Sang Bae Han, Woo Kyu Park, Hee Yeong Cho, Sung Yun Cho, Hye Byn Park, Min Jong Song, Jin Tae Hong
Software Mentions: 1
Published: over 7 years ago

10.1186/s13195-015-0094-5

Changes in the neurochemistry of athletes with repetitive brain trauma: preliminary results using localized correlated spectroscopy
Cited by: 65
Author(s): Alexander P. Lin, Saadallah Ramadan, Robert A. Stern, Hayden C. Box, Christopher J. Nowinski, Brian D. Ross, Carolyn E. Mountford
Software Mentions: 1
Published: over 9 years ago

10.3390/jpm11060502

Impaired Right Ventricular Calcium Cycling Is an Early Risk Factor in R14del-Phospholamban Arrhythmias
Cited by: 9
Author(s): Kobra Haghighi, George Gardner, Elizabeth Vafiadaki, Mohit Kumar, Lisa C Green, Jianyong Ma, Jeffrey S Crocker, Sheryl E. Koch, Demetrios A. Arvanitis, Phillip Bidwell, Jack Rubinstein, Rutger R van de Leur, Pieter A. Doevendans, Fadi G. Akar, Michael Tranter, Hong Sheng Wang, Sakthivel Sadayappan, Deeptankar DeMazumder, Despina Sanoudou, Roger J. Hajjar, Francesca Stillitano, Evangelia G. Kranias
Software Mentions: 1
Published: over 3 years ago

10.1007/s12272-021-01340-8

Amyloidogenic, neuroinflammatory and memory dysfunction effects of HIV-1 gp120
Cited by: 4
Author(s): Young-Jung Lee, In Jun Yeo, Dong Young Choi, Jaesuk Yun, Dong Ju Son, Sang‐Bae Han, Jin Tae Hong
Software Mentions: 1
Published: over 3 years ago

10.1186/1472-6807-9-63

Structural and functional characteristics of xenavidin, the first frog avidin from Xenopus tropicalis
Cited by: 28
Author(s): Juha Määttä, Satu H. Helppolainen, Vesa P. Hytönen, Mark S. Johnson, Markku S. Kulomaa, Tomi T. Airenne, Henri R. Nordlund
Software Mentions: 1
Published: about 15 years ago

10.1042/BJ20140232

Differential conformational dynamics in the closely homologous FK506-binding domains of FKBP51 and FKBP52
Cited by: 21
Author(s): Sourajit M. Mustafi, David M. LeMaster, Griselda Hernández
Software Mentions: 1
Published: over 10 years ago

10.1002/bip.21615

Measuring thermodynamic details of DNA hybridization using fluorescence
Cited by: 67
Author(s): Yong You, Andrey V. Tataurov, Richard Owczarzy
Software Mentions: 1
Published: over 13 years ago

10.3390/ma8010216

Cholesterol-Enhanced Polylactide-Based Stereocomplex Micelle for Effective Delivery of Doxorubicin
Cited by: 28
Author(s): Jixue Wang, Weiguo Xu, Jianxun Ding, Shengfan Lu, Xiaoqing Wang, Handong Wang, Xuesi Chen
Software Mentions: 1
Published: almost 10 years ago

10.1007/s12035-014-8853-z

Memory Impairment in Estrogen Receptor α Knockout Mice Through Accumulation of Amyloid-β Peptides
Cited by: 25
Author(s): Chul Ju Hwang, Hyung-Mun Yun, Kyung-Ran Park, Ju Kyung Song, Hyun Ok Seo, Byung Kook Hyun, Dong Young Choi, Hwan‐Soo Yoo, Ki‐Wan Oh, Dae Yeon Hwang, Sang‐Bae Han, Jin Tae Hong
Software Mentions: 1
Published: over 10 years ago