cran: BAT | Projects | Ecosyste.ms: Papers

10.1186/s13104-016-2171-7

The effect of DNA extraction methodology on gut microbiota research applications
Cited by: 54
Author(s): Konstantinos Gerasimidis, Martin Bertz, Christopher Quince, K. T. Brunner, Alanna E. Bruce, Emilie Combet, Szymon T. Calus, Nicholas J. Loman, Umer Zeeshan Ijaz
Software Mentions: 8
Published: over 8 years ago

10.1038/s41598-018-26332-5

Cross-shelf investigation of coral reef cryptic benthic organisms reveals diversity patterns of the hidden majority
Cited by: 47
Author(s): John K. Pearman, Matthieu Leray, Rodrigo Villalobos, Ryuji J. Machida, Michael L. Berumen, Nancy Knowlton, Susana Carvalho
Software Mentions: 8
Published: over 6 years ago

10.1038/s41598-020-60575-5

Dung beetles response to livestock management in three different regional contexts
Cited by: 8
Author(s): Celeste Beatriz Guerra Alonso, Gustavo A. Zurita, M. Isabel Bellocq
Software Mentions: 7
Published: over 4 years ago

10.1186/s40246-015-0050-2

A survey of computational tools for downstream analysis of proteomic and other omic datasets
Cited by: 17
Author(s): Anis Karimpour-Fard, L. Elaine Epperson, Lawrence Hunter
Software Mentions: 7
Published: about 9 years ago

10.1186/s12859-020-3470-5

wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data
Cited by: 8
Author(s): Marius Wöste, Elsa Leitão, Sandra Laurentino, Bernhard Horsthemke, Sven Rahmann, Christopher Schröder
Software Mentions: 5
Published: over 4 years ago

10.1002/ece3.7952

Functional diversity of avian communities increases with canopy height: From individual behavior to continental‐scale patterns
Cited by: 5
Author(s): Vladimír Remeš, Eva Remešová, Nicholas R. Friedman, Beata Matysioková, Lucia Rubáčová
Software Mentions: 5
Published: over 3 years ago

10.1098/rsos.202093

Habitat filtering differentially modulates phylogenetic and functional diversity relationships between predatory arthropods
Cited by: 4
Author(s): Aurélien Ridel, Denis Lafage, Pierre Devogel, Thomas Lacoue-Labarthe, Julien Pétillon
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pone.0219493

Taxonomic and functional diversity of insect herbivore assemblages associated with the canopy-dominant trees of the Azorean native forest
Cited by: 14
Author(s): Carla Rego, Mário Boieiro, François Rigal, Sérvio Pontes Ribeiro, Pedro Cardoso, Paulo A. V. Borges
Software Mentions: 4
Published: over 5 years ago

10.1007/s00248-020-01576-9

Biodiversity Loss Threatens the Current Functional Similarity of Beta Diversity in Benthic Diatom Communities
Cited by: 8
Author(s): Leena Virta, Janne Soininen, Alf Norkko
Software Mentions: 4
Published: about 4 years ago

10.1038/s41598-018-30318-8

Development and Validation of the Computerised Adaptive Beat Alignment Test (CA-BAT)
Cited by: 32
Author(s): Peter M. C. Harrison, Daniel Müllensiefen
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0164198

Wild Herbivore Grazing Enhances Insect Diversity over Livestock Grazing in an African Grassland System
Cited by: 25
Author(s): James S. Pryke, Francois Roets, Michael J. Samways
Software Mentions: 3
Published: about 8 years ago

10.1371/journal.pone.0158170

Taxonomic and Phylogenetic Determinants of Functional Composition of Bolivian Bat Assemblages
Cited by: 16
Author(s): Luís F. Aguirre, Flavia Montaño‐Centellas, María Mercedes Gavilánez, Richard D. Stevens
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0228561

Completing Linnaeus’s inventory of the Swedish insect fauna: Only 5,000 species left?
Cited by: 22
Author(s): Fredrik Ronquist, Mattias Forshage, Sibylle Häggqvist, Dave Karlsson, Rasmus Hovmöller, Johannes Bergsten, Kevin C. Holston, Tom Britton, Johan Abenius, B. Andersson, Peter Neerup Buhl, Carl-Cedric Coulianos, Arne Fjellberg, Carl‐Axel Gertsson, Sven Hellqvist, Mathias Jaschhof, Jostein Kjærandsen, Seraina Klopfstein, Sverre Kobro, Andrew D. Liston, Rudolf Meier, Marc A. A. Pollet, Matthias Riedel, Jindřích Roháček, Meike M. Schuppenhauer, Julia Stigenberg, Ingemar Struwe, Taeger Andreas, Sven-Olof Ulefors, Oleksandr Varga, Phil Withers, Ulf Gärdenfors
Software Mentions: 3
Published: over 4 years ago

10.1038/s41598-020-80769-1

Automation of absolute protein-ligand binding free energy calculations for docking refinement and compound evaluation
Cited by: 41
Author(s): Germano Heinzelmann, Michael K. Gilson
Software Mentions: 3
Published: almost 4 years ago

10.12688/f1000research.12302.1

BAT: Bisulfite Analysis Toolkit
Cited by: 12
Author(s): Helene Kretzmer, Christian Otto, Steve Hoffmann
Software Mentions: 3
Published: over 7 years ago

10.1186/s12864-019-6404-8

EpiMOLAS: an intuitive web-based framework for genome-wide DNA methylation analysis
Cited by: 0
Author(s): Sheng-Yao Su, I-Hsuan Lu, Wen-Chih Cheng, Wei-Chun Chung, Pao‐Yang Chen, Jan-Ming Ho, Shu-Hwa Chen, Chung‐Yen Lin
Software Mentions: 3
Published: over 4 years ago

10.1002/ece3.2626

Gauging megadiversity with optimized and standardized sampling protocols: A case for tropical forest spiders
Cited by: 24
Author(s): Jagoba Malumbres‐Olarte, Nikolaj Scharff, Thomas Pape, Jonathan A. Coddington, Pedro Cardoso
Software Mentions: 2
Published: almost 8 years ago

10.1038/s41598-021-82059-w

Local environmental variables are key drivers of ant taxonomic and functional beta-diversity in a Mediterranean dryland
Cited by: 11
Author(s): Clara Frasconi Wendt, Ana Ceia-Hasse, Alice Nunes, Robin M. Verble, Giacomo Santini, Mário Boieiro, Cristina Branquinho
Software Mentions: 2
Published: almost 4 years ago

10.3390/biom10030454

Machine Learning to Identify Flexibility Signatures of Class A GPCR Inhibition
Cited by: 17
Author(s): Joseph Bemister-Buffington, A. Wolf, Sebastian Raschka, Leslie A. Kuhn
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0186123

Community assembly of coral reef fishes along the Melanesian biodiversity gradient
Cited by: 4
Author(s): Joshua Adam Drew, Kathryn L. Amatangelo
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0202523

Improving the performance of lexicon-based review sentiment analysis method by reducing additional introduced sentiment bias
Cited by: 26
Author(s): Hao Han, Yongshi Zhang, Jianpei Zhang, Jing Yang, Xiaomei Zou
Software Mentions: 2
Published: about 6 years ago

10.1128/AEM.02914-20

Monitoring Microbial Populations and Antibiotic Resistance Gene Enrichment Associated with Arctic Waste Stabilization Ponds
Cited by: 5
Author(s): Monica Gromala, Josh D. Neufeld, Brendan J. McConkey
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0156840

Subtle Ecological Gradient in the Tropics Triggers High Species-Turnover in a Local Geographical Scale
Cited by: 7
Author(s): Dinh Thi Nguyen, Jesús Gómez‐Zurita
Software Mentions: 2
Published: over 8 years ago

10.1002/ece3.7798

Assessment of ecological impairment of Arctic streams: Challenges and future directions
Cited by: 2
Author(s): Andrew S. Medeiros, Andrew Williams, Djuradj Milošević
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-017-05262-8

Integrative Profiling of Bee Communities from Habitats of Tropical Southern Yunnan (China)
Cited by: 4
Author(s): X. W. Liu, Douglas Chesters, Qingyan Dai, Ze‐Qing Niu, Philip Beckschäfer, Konrad Martin, Chao Zhu
Software Mentions: 1
Published: over 7 years ago

10.3390/s18030763

High-Precision Phenotyping of Grape Bunch Architecture Using Fast 3D Sensor and Automation
Cited by: 41
Author(s): Florian Rist, Katja Herzog, Jennifer Mack, Robert Richter, Volker Steinhage, Reinhard Töpfer
Software Mentions: 1
Published: over 6 years ago

10.3390/s21165293

Vision-Less Sensing for Autonomous Micro-Drones
Cited by: 1
Author(s): Simon Pikalov, Elisha Azaria, Shaya Sonnenberg, Boaz Ben‐Moshe, Amos Azaria
Software Mentions: 1
Published: over 3 years ago

10.1186/s12959-016-0123-z

Pre-analytical issues in the haemostasis laboratory: guidance for the clinical laboratories
Cited by: 84
Author(s): A. Magnette, Marc Chatelain, Bernard Châtelain, Hugo Ten Cate, François Mullier
Software Mentions: 1
Published: almost 8 years ago

10.1136/tc.2008.025999

British American Tobacco and the "insidious impact of illicit trade" in cigarettes across Africa
Cited by: 73
Author(s): Eric LeGresley, Kelley Lee, Monique E. Muggli, Preeti Patel, Jeff Collin, R. Douglas Hurt
Software Mentions: 1
Published: about 16 years ago

10.1136/tobaccocontrol-2018-054264

Brussels Declaration: a vehicle for the advancement of tobacco and alcohol industry interests at the science/policy interface?
Cited by: 26
Author(s): Jim McCambridge, Mike Daube, Martin McKee
Software Mentions: 1
Published: over 6 years ago

10.2196/13728

A Behavioral Activation Mobile Health App for Smokers With Depression: Development and Pilot Evaluation in a Single-Arm Trial
Cited by: 4
Author(s): Jaimee L. Heffner, Noreen L Watson, Edit Serfozo, Kristin E. Mull, Laura MacPherson, Melissa L. Gasser, Jonathan B. Bricker
Software Mentions: 1
Published: almost 5 years ago

10.3390/ijerph17010055

Combined Interventions to Reduce Burnout Complaints and Promote Return to Work: A Systematic Review of Effectiveness and Mediators of Change
Cited by: 21
Author(s): Roald Pijpker, L. Vaandrager, E.J. Veen, M.A. Koelen
Software Mentions: 1
Published: almost 5 years ago

10.3390/ijerph17249495

Burnout Assessment Tool (BAT)—Development, Validity, and Reliability
Cited by: 172
Author(s): Wilmar B. Schaufeli, Steffie Desart, Hans De Witte
Software Mentions: 1
Published: almost 4 years ago

10.3390/ijerph18137121

The Ecuadorian Version of the Burnout Assessment Tool (BAT): Adaptation and Validation
Cited by: 13
Author(s): Andrea M Vinueza-Solórzano, Alexandra Chavarría, Clarissa Pinto Pizarro de Freitas, Wilmar B. Schaufeli, Hans De Witte, Cláudio Simon Hutz, Ana Cláudia Souza Vazquez
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms17060968

Selection of Suitable Reference Genes for Quantitative Real-Time PCR Normalization in Three Types of Rat Adipose Tissue
Cited by: 31
Author(s): Wanxia Zhang, Jie Fan, Jing Ma, Yi-song Rao, Li Zhang, You-e Yan
Software Mentions: 1
Published: over 8 years ago

10.1063/1.5128371

3D bioprinting and its potential impact on cardiac failure treatment: An industry perspective
Cited by: 38
Author(s): Ravi K. Birla, Stuart K. Williams
Software Mentions: 1
Published: almost 5 years ago

10.1111/jth.12332

Utility of the ISTH bleeding assessment tool in predicting platelet defects in participants with suspected inherited platelet function disorders
Cited by: 101
Author(s): Gillian Lowe, Marie Lordkipanidzé, Steve P. Watson
Software Mentions: 1
Published: about 11 years ago

10.1152/ajpendo.00352.2020

Thermogenic recruitment of brown and brite/beige adipose tissues is not obligatorily associated with macrophage accretion or attrition
Cited by: 5
Author(s): Nathalie Boulet, Ineke Luijten, Barbara Cannon, Jan Nedergaard
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12889-018-5071-z

Anti-tobacco control industry strategies in Turkey
Cited by: 6
Author(s): Seda Keklik, Derya Gültekin-Karakaş
Software Mentions: 1
Published: over 6 years ago

10.3897/BDJ.8.e54749

Arthropod diversity in two Historic Gardens in the Azores, Portugal
Cited by: 8
Author(s): Alba Arteaga, Jagoba Malumbres‐Olarte, Rosalina Gabriel, Alejandra Ros‐Prieto, Pedro Casimiro, Ana Fuentes Sánchez, Isabel Soares de Albergaria, Paulo A. V. Borges
Software Mentions: 1
Published: over 4 years ago

10.1186/s13030-019-0151-6

Behavioral activation therapy for depression and anxiety in cancer patients: a case series study
Cited by: 10
Author(s): Takatoshi Hirayama, Yuko Ogawa, Yuko Yanai, Shin Suzuki, Ken Shimizu
Software Mentions: 1
Published: over 5 years ago

10.1007/s10549-017-4255-z

Objective breast symmetry analysis with the breast analyzing tool (BAT): improved tool for clinical trials
Cited by: 18
Author(s): Wilfried Krois, A Romar, T. Cameron Wild, Peter Dubsky, Ruth Exner, Peter Panhofer, R. Jakesz, Michael Gnant, Florian Fitzal
Software Mentions: 1
Published: over 7 years ago

10.1007/s00508-020-01730-w

Patient satisfaction after breast cancer surgery
Cited by: 8
Author(s): Carmen Leser, Yen Y. Tan, Christian Singer, Robert Zeillinger, Florian Fitzal, Johann Lehrner, Daniel König, Christine Deutschmann, Daphne Gschwantler‐Kaulich
Software Mentions: 1
Published: about 4 years ago

10.1103/PhysRevD.93.082001

Measurement of the high-energy gamma-ray emission from the Moon with the Fermi Large Area Telescope
Cited by: 24
Author(s): M. Ackermann, M. Ajello, A. Albert, W. B. Atwood, Luca Baldini, G. Barbiellini, D. Bastieri, R. Bellazzini, E. Bissaldi, R. D. Blandford, R. Bonino, E. Bottacini, J. Bregeon, Pascal Bruel, R. Buehler, G. A. Caliandro, R. A. Cameron, M. Caragiulo, P. A. Caraveo, E. Cavazzuti, C. Cecchi, A. Chekhtman, J. Chiang, G. Chiaro, S. Ciprini, R. Claus, J. Cohen-Tanugi, F. Costanza, A. Cuoco, S. Cutini, F. D’Ammando, A. De Angelis, F. de Palma, R. Desiante, S. W. Digel, L. Di Venere, P. S. Drell, C. Favuzzi, S. J. Fegan, W. B. Focke, A. Franckowiak, S. Funk, P. Fusco, F. Gargano, D. Gasparrini, N. Giglietto, F. Giordano, M. Giroletti, T. Glanzman, G. Godfrey, I. A. Grenier, J. E. Grove, S. Guiriec, A. K. Harding, J. W. Hewitt, D. Horan, X. Hou, G. Iafrate, G. Jóhannesson, T. Kamae, M. Kuss, Stefan Larsson, L. Latronico, J. Li, L. Li, F. Longo, F. Loparco, M. N. Lovellette, P. Lubrano, J. D. Magill, S. Maldera, Alberto Manfreda, M. Mayer, M. N. Mazziotta, P. F. Michelson, W. Mitthumsiri, T. Mizuno, M. E. Monzani, A. Morselli, S. Murgia, E. Nuss, N. Omodei, E. Orlando, J. F. Ormes, D. Paneque, J. S. Perkins, M. Pesce-Rollins, V. Petrosian, F. Piron, G. Pivato, S. Rainò, R. Rando, M. Razzano, A. Reimer, O. Reimer, T. Reposeur, C. Sgrò, E. J. Siskind, F. Spada, G. Spandre, P. Spinelli, H. Takahashi, J. B. Thayer, D. J. Thompson, L. Tibaldo, D. F. Torres, G. Tosti, E. Troja, G. Vianello, B. L. Winer, K. S. Wood, M. Yassine, F. Cerutti, A. Ferrari, P. Sala
Software Mentions: 1
Published: over 8 years ago

10.1080/09537104.2018.1543865

Investigation of the contribution of an underlying platelet defect in women with unexplained heavy menstrual bleeding
Cited by: 8
Author(s): Gillian Lowe, Roksana Fickowska, Rashid Al Ghaithi, Annabel Maclachlan, Paul Harrison, William A. Lester, Steve P. Watson, Bethan Myers, T. Justin Clark, Neil V. Morgan
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pmed.0030228

“Key to the Future”: British American Tobacco and Cigarette Smuggling in China
Cited by: 68
Author(s): Kelley Lee, Jeff Collin
Software Mentions: 1
Published: over 18 years ago

10.1371/journal.pone.0068242

New Metrics for Comparison of Taxonomies Reveal Striking Discrepancies among Species Delimitation Methods in Madascincus Lizards
Cited by: 161
Author(s): Aurélien Miralles, Miguel Vences
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0140682

Quantifying the Human Impacts on Papua New Guinea Reef Fish Communities across Space and Time
Cited by: 13
Author(s): Joshua Adam Drew, Kathryn L. Amatangelo, Ruth A. Hufbauer
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0128276

The Colonisation of Exotic Species Does Not Have to Trigger Faunal Homogenisation: Lessons from the Assembly Patterns of Arthropods on Oceanic Islands
Cited by: 19
Author(s): Margarita Florencio, Jorge M. Lobo, Pedro Cardoso, Mário Almeida‐Neto, Paulo A. V. Borges
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0049198

Formalization, Annotation and Analysis of Diverse Drug and Probe Screening Assay Datasets Using the BioAssay Ontology (BAO)
Cited by: 53
Author(s): Uma D. Vempati, Magdalena J. Przydzial, Caty Chung, Saminda Abeyruwan, Ahsan Mir, Kazuhiko Sakurai, Ubbo Visser, Vance Lemmon, Stephan C. Schürer
Software Mentions: 1
Published: about 12 years ago

10.1140/epjc/s10052-017-5270-2

On flavourful Easter eggs for New Physics hunger and lepton flavour universality violation
Cited by: 199
Author(s): M. Ciuchini, António M. Coutinho, Marco Fedele, E. Franco, Ayan Paul, L. Silvestrini, Mauro Valli
Software Mentions: 1
Published: about 7 years ago

10.3389/fmed.2020.00138

Clinical Characteristics of Secondary Immune Thrombocytopenia Associated With Primary Sjögren's Syndrome
Cited by: 10
Author(s): Fan Dai, Ge Yang, Peishi Rao, Puqi Wu, Rongjuan Chen, Sun Yan, Yun Peng, Hongyan Qian, Bin Wang, Shiju Chen, Yuan Liu, Guixiu Shi
Software Mentions: 1
Published: over 4 years ago

10.3389/fnins.2015.00197

Current conceptual challenges in the study of rhythm processing deficits
Cited by: 4
Author(s): Pauline Tranchant, Dominique T. Vuvan
Software Mentions: 1
Published: over 9 years ago

10.3389/fnins.2021.733316

The Vital Role of Central Executive Network in Brain Age: Evidence From Machine Learning and Transcriptional Signatures
Cited by: 6
Author(s): Keke Fang, Shaoqiang Han, Yuming Li, Jing Ding, Jilian Wu, Wenzhou Zhang
Software Mentions: 1
Published: about 3 years ago

10.3389/fpsyg.2020.01819

Validation of the Japanese Version of the Burnout Assessment Tool
Cited by: 36
Author(s): Keiko Sakakibara, Akihito Shimazu, Hiroyuki Toyama, Wilmar B. Schaufeli
Software Mentions: 1
Published: over 4 years ago

10.1186/s13059-019-1817-x

Robust taxonomic classification of uncharted microbial sequences and bins with CAT and BAT
Cited by: 234
Author(s): F. A. Bastiaan von Meijenfeldt, Ksenia Arkhipova, Diego D. Cambuy, Felipe H. Coutinho, Bas E. Dutilh
Software Mentions: 1
Published: about 5 years ago

10.1002/ieam.4401

A critical review and weight of evidence approach for assessing the bioaccumulation of phenanthrene in aquatic environments
Cited by: 8
Author(s): James M. Armitage, Liisa Toose, Louise Camenzuli, Aaron D. Redman, Thomas F. Parkerton, David Saunders, James R. Wheeler, A. V. M. Martin, Eleni Vaiopoulou, Jon A. Arnot
Software Mentions: 1
Published: over 3 years ago

10.1120/jacmp.v8i3.2714

Abstracts of the 2007 Young Invesigators Symposium
Cited by: 0
Author(s):
Software Mentions: 1
Published: over 17 years ago

10.1120/jacmp.v8i3.2268

Comparing computed tomography localization with daily ultrasound during image‐guided radiation therapy for the treatment of prostate cancer: a prospective evaluation
Cited by: 28
Author(s): Steven J. Feigenberg, K Paskalev, Shawn McNeeley, Eric M. Horwitz, André Konski, Lu Wang, Charlie Ma, Alan Pollack
Software Mentions: 1
Published: over 17 years ago

10.1155/2014/705604

Image Guidance in Radiation Therapy: Techniques and Applications
Cited by: 66
Author(s): Shikha Goyal, Tejinder Kataria
Software Mentions: 1
Published: almost 11 years ago

Projects: cran: BAT

Papers Mentioning BAT 60