Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: BAT
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/BAT
Biodiversity Assessment Tools
38 versions
Latest release: 12 months ago
2 dependent packages
1,535 downloads last month
Papers Mentioning BAT 60
10.1186/s13104-016-2171-7
The effect of DNA extraction methodology on gut microbiota research applicationsCited by: 54
Author(s): Konstantinos Gerasimidis, Martin Bertz, Christopher Quince, K. T. Brunner, Alanna E. Bruce, Emilie Combet, Szymon T. Calus, Nicholas J. Loman, Umer Zeeshan Ijaz
Software Mentions: 8
Published: about 8 years ago
10.1038/s41598-018-26332-5
Cross-shelf investigation of coral reef cryptic benthic organisms reveals diversity patterns of the hidden majorityCited by: 47
Author(s): John K. Pearman, Matthieu Leray, Rodrigo Villalobos, Ryuji J. Machida, Michael L. Berumen, Nancy Knowlton, Susana Carvalho
Software Mentions: 8
Published: over 6 years ago
10.1038/s41598-020-60575-5
Dung beetles response to livestock management in three different regional contextsCited by: 8
Author(s): Celeste Beatriz Guerra Alonso, Gustavo A. Zurita, M. Isabel Bellocq
Software Mentions: 7
Published: over 4 years ago
10.1186/s40246-015-0050-2
A survey of computational tools for downstream analysis of proteomic and other omic datasetsCited by: 17
Author(s): Anis Karimpour-Fard, L. Elaine Epperson, Lawrence Hunter
Software Mentions: 7
Published: almost 9 years ago
10.1186/s12859-020-3470-5
wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing dataCited by: 8
Author(s): Marius Wöste, Elsa Leitão, Sandra Laurentino, Bernhard Horsthemke, Sven Rahmann, Christopher Schröder
Software Mentions: 5
Published: over 4 years ago
10.1002/ece3.7952
Functional diversity of avian communities increases with canopy height: From individual behavior to continental‐scale patternsCited by: 5
Author(s): Vladimír Remeš, Eva Remešová, Nicholas R. Friedman, Beata Matysioková, Lucia Rubáčová
Software Mentions: 5
Published: about 3 years ago
10.1098/rsos.202093
Habitat filtering differentially modulates phylogenetic and functional diversity relationships between predatory arthropodsCited by: 4
Author(s): Aurélien Ridel, Denis Lafage, Pierre Devogel, Thomas Lacoue-Labarthe, Julien Pétillon
Software Mentions: 5
Published: over 3 years ago
10.1371/journal.pone.0219493
Taxonomic and functional diversity of insect herbivore assemblages associated with the canopy-dominant trees of the Azorean native forestCited by: 14
Author(s): Carla Rego, Mário Boieiro, François Rigal, Sérvio Pontes Ribeiro, Pedro Cardoso, Paulo A. V. Borges
Software Mentions: 4
Published: about 5 years ago
10.1007/s00248-020-01576-9
Biodiversity Loss Threatens the Current Functional Similarity of Beta Diversity in Benthic Diatom CommunitiesCited by: 8
Author(s): Leena Virta, Janne Soininen, Alf Norkko
Software Mentions: 4
Published: about 4 years ago
10.1038/s41598-018-30318-8
Development and Validation of the Computerised Adaptive Beat Alignment Test (CA-BAT)Cited by: 32
Author(s): Peter M. C. Harrison, Daniel Müllensiefen
Software Mentions: 4
Published: about 6 years ago
10.1371/journal.pone.0164198
Wild Herbivore Grazing Enhances Insect Diversity over Livestock Grazing in an African Grassland SystemCited by: 25
Author(s): James S. Pryke, Francois Roets, Michael J. Samways
Software Mentions: 3
Published: almost 8 years ago
10.1371/journal.pone.0158170
Taxonomic and Phylogenetic Determinants of Functional Composition of Bolivian Bat AssemblagesCited by: 16
Author(s): Luís F. Aguirre, Flavia Montaño‐Centellas, María Mercedes Gavilánez, Richard D. Stevens
Software Mentions: 3
Published: over 8 years ago
10.1371/journal.pone.0228561
Completing Linnaeus’s inventory of the Swedish insect fauna: Only 5,000 species left?Cited by: 22
Author(s): Fredrik Ronquist, Mattias Forshage, Sibylle Häggqvist, Dave Karlsson, Rasmus Hovmöller, Johannes Bergsten, Kevin C. Holston, Tom Britton, Johan Abenius, B. Andersson, Peter Neerup Buhl, Carl-Cedric Coulianos, Arne Fjellberg, Carl‐Axel Gertsson, Sven Hellqvist, Mathias Jaschhof, Jostein Kjærandsen, Seraina Klopfstein, Sverre Kobro, Andrew D. Liston, Rudolf Meier, Marc A. A. Pollet, Matthias Riedel, Jindřích Roháček, Meike M. Schuppenhauer, Julia Stigenberg, Ingemar Struwe, Taeger Andreas, Sven-Olof Ulefors, Oleksandr Varga, Phil Withers, Ulf Gärdenfors
Software Mentions: 3
Published: over 4 years ago
10.1038/s41598-020-80769-1
Automation of absolute protein-ligand binding free energy calculations for docking refinement and compound evaluationCited by: 41
Author(s): Germano Heinzelmann, Michael K. Gilson
Software Mentions: 3
Published: over 3 years ago
10.12688/f1000research.12302.1
BAT: Bisulfite Analysis ToolkitCited by: 12
Author(s): Helene Kretzmer, Christian Otto, Steve Hoffmann
Software Mentions: 3
Published: about 7 years ago
10.1186/s12864-019-6404-8
EpiMOLAS: an intuitive web-based framework for genome-wide DNA methylation analysisCited by: 0
Author(s): Sheng-Yao Su, I-Hsuan Lu, Wen-Chih Cheng, Wei-Chun Chung, Pao‐Yang Chen, Jan-Ming Ho, Shu-Hwa Chen, Chung‐Yen Lin
Software Mentions: 3
Published: over 4 years ago
10.1002/ece3.2626
Gauging megadiversity with optimized and standardized sampling protocols: A case for tropical forest spidersCited by: 24
Author(s): Jagoba Malumbres‐Olarte, Nikolaj Scharff, Thomas Pape, Jonathan A. Coddington, Pedro Cardoso
Software Mentions: 2
Published: almost 8 years ago
10.1038/s41598-021-82059-w
Local environmental variables are key drivers of ant taxonomic and functional beta-diversity in a Mediterranean drylandCited by: 11
Author(s): Clara Frasconi Wendt, Ana Ceia-Hasse, Alice Nunes, Robin M. Verble, Giacomo Santini, Mário Boieiro, Cristina Branquinho
Software Mentions: 2
Published: over 3 years ago
10.3390/biom10030454
Machine Learning to Identify Flexibility Signatures of Class A GPCR InhibitionCited by: 17
Author(s): Joseph Bemister-Buffington, A. Wolf, Sebastian Raschka, Leslie A. Kuhn
Software Mentions: 2
Published: over 4 years ago
10.1371/journal.pone.0186123
Community assembly of coral reef fishes along the Melanesian biodiversity gradientCited by: 4
Author(s): Joshua Adam Drew, Kathryn L. Amatangelo
Software Mentions: 2
Published: almost 7 years ago
10.1371/journal.pone.0202523
Improving the performance of lexicon-based review sentiment analysis method by reducing additional introduced sentiment biasCited by: 26
Author(s): Hao Han, Yongshi Zhang, Jianpei Zhang, Jing Yang, Xiaomei Zou
Software Mentions: 2
Published: about 6 years ago
10.1128/AEM.02914-20
Monitoring Microbial Populations and Antibiotic Resistance Gene Enrichment Associated with Arctic Waste Stabilization PondsCited by: 5
Author(s): Monica Gromala, Josh D. Neufeld, Brendan J. McConkey
Software Mentions: 2
Published: over 3 years ago
10.1371/journal.pone.0156840
Subtle Ecological Gradient in the Tropics Triggers High Species-Turnover in a Local Geographical ScaleCited by: 7
Author(s): Dinh Thi Nguyen, Jesús Gómez‐Zurita
Software Mentions: 2
Published: over 8 years ago
10.1002/ece3.7798
Assessment of ecological impairment of Arctic streams: Challenges and future directionsCited by: 2
Author(s): Andrew S. Medeiros, Andrew Williams, Djuradj Milošević
Software Mentions: 2
Published: over 3 years ago
10.1038/s41598-017-05262-8
Integrative Profiling of Bee Communities from Habitats of Tropical Southern Yunnan (China)Cited by: 4
Author(s): X. W. Liu, Douglas Chesters, Qingyan Dai, Ze‐Qing Niu, Philip Beckschäfer, Konrad Martin, Chao Zhu
Software Mentions: 1
Published: about 7 years ago
10.3390/s18030763
High-Precision Phenotyping of Grape Bunch Architecture Using Fast 3D Sensor and AutomationCited by: 41
Author(s): Florian Rist, Katja Herzog, Jennifer Mack, Robert Richter, Volker Steinhage, Reinhard Töpfer
Software Mentions: 1
Published: over 6 years ago
10.3390/s21165293
Vision-Less Sensing for Autonomous Micro-DronesCited by: 1
Author(s): Simon Pikalov, Elisha Azaria, Shaya Sonnenberg, Boaz Ben‐Moshe, Amos Azaria
Software Mentions: 1
Published: about 3 years ago
10.1186/s12959-016-0123-z
Pre-analytical issues in the haemostasis laboratory: guidance for the clinical laboratoriesCited by: 84
Author(s): A. Magnette, Marc Chatelain, Bernard Châtelain, Hugo Ten Cate, François Mullier
Software Mentions: 1
Published: almost 8 years ago
10.1136/tc.2008.025999
British American Tobacco and the "insidious impact of illicit trade" in cigarettes across AfricaCited by: 73
Author(s): Eric LeGresley, Kelley Lee, Monique E. Muggli, Preeti Patel, Jeff Collin, R. Douglas Hurt
Software Mentions: 1
Published: about 16 years ago
10.1136/tobaccocontrol-2018-054264
Brussels Declaration: a vehicle for the advancement of tobacco and alcohol industry interests at the science/policy interface?Cited by: 26
Author(s): Jim McCambridge, Mike Daube, Martin McKee
Software Mentions: 1
Published: over 6 years ago
10.2196/13728
A Behavioral Activation Mobile Health App for Smokers With Depression: Development and Pilot Evaluation in a Single-Arm TrialCited by: 4
Author(s): Jaimee L. Heffner, Noreen L Watson, Edit Serfozo, Kristin E. Mull, Laura MacPherson, Melissa L. Gasser, Jonathan B. Bricker
Software Mentions: 1
Published: almost 5 years ago
10.3390/ijerph17010055
Combined Interventions to Reduce Burnout Complaints and Promote Return to Work: A Systematic Review of Effectiveness and Mediators of ChangeCited by: 21
Author(s): Roald Pijpker, L. Vaandrager, E.J. Veen, M.A. Koelen
Software Mentions: 1
Published: almost 5 years ago
10.3390/ijerph17249495
Burnout Assessment Tool (BAT)—Development, Validity, and ReliabilityCited by: 172
Author(s): Wilmar B. Schaufeli, Steffie Desart, Hans De Witte
Software Mentions: 1
Published: almost 4 years ago
10.3390/ijerph18137121
The Ecuadorian Version of the Burnout Assessment Tool (BAT): Adaptation and ValidationCited by: 13
Author(s): Andrea M Vinueza-Solórzano, Alexandra Chavarría, Clarissa Pinto Pizarro de Freitas, Wilmar B. Schaufeli, Hans De Witte, Cláudio Simon Hutz, Ana Cláudia Souza Vazquez
Software Mentions: 1
Published: over 3 years ago
10.3390/ijms17060968
Selection of Suitable Reference Genes for Quantitative Real-Time PCR Normalization in Three Types of Rat Adipose TissueCited by: 31
Author(s): Wanxia Zhang, Jie Fan, Jing Ma, Yi-song Rao, Li Zhang, You-e Yan
Software Mentions: 1
Published: over 8 years ago
10.1063/1.5128371
3D bioprinting and its potential impact on cardiac failure treatment: An industry perspectiveCited by: 38
Author(s): Ravi K. Birla, Stuart K. Williams
Software Mentions: 1
Published: over 4 years ago
10.1111/jth.12332
Utility of the ISTH bleeding assessment tool in predicting platelet defects in participants with suspected inherited platelet function disordersCited by: 101
Author(s): Gillian Lowe, Marie Lordkipanidzé, Steve P. Watson
Software Mentions: 1
Published: about 11 years ago
10.1152/ajpendo.00352.2020
Thermogenic recruitment of brown and brite/beige adipose tissues is not obligatorily associated with macrophage accretion or attritionCited by: 5
Author(s): Nathalie Boulet, Ineke Luijten, Barbara Cannon, Jan Nedergaard
Software Mentions: 1
Published: over 3 years ago
10.1186/s12889-018-5071-z
Anti-tobacco control industry strategies in TurkeyCited by: 6
Author(s): Seda Keklik, Derya Gültekin-Karakaş
Software Mentions: 1
Published: over 6 years ago
10.3897/BDJ.8.e54749
Arthropod diversity in two Historic Gardens in the Azores, PortugalCited by: 8
Author(s): Alba Arteaga, Jagoba Malumbres‐Olarte, Rosalina Gabriel, Alejandra Ros‐Prieto, Pedro Casimiro, Ana Fuentes Sánchez, Isabel Soares de Albergaria, Paulo A. V. Borges
Software Mentions: 1
Published: about 4 years ago
10.1186/s13030-019-0151-6
Behavioral activation therapy for depression and anxiety in cancer patients: a case series studyCited by: 10
Author(s): Takatoshi Hirayama, Yuko Ogawa, Yuko Yanai, Shin Suzuki, Ken Shimizu
Software Mentions: 1
Published: over 5 years ago
10.1007/s10549-017-4255-z
Objective breast symmetry analysis with the breast analyzing tool (BAT): improved tool for clinical trialsCited by: 18
Author(s): Wilfried Krois, A Romar, T. Cameron Wild, Peter Dubsky, Ruth Exner, Peter Panhofer, R. Jakesz, Michael Gnant, Florian Fitzal
Software Mentions: 1
Published: over 7 years ago
10.1007/s00508-020-01730-w
Patient satisfaction after breast cancer surgeryCited by: 8
Author(s): Carmen Leser, Yen Y. Tan, Christian Singer, Robert Zeillinger, Florian Fitzal, Johann Lehrner, Daniel König, Christine Deutschmann, Daphne Gschwantler‐Kaulich
Software Mentions: 1
Published: about 4 years ago
10.1103/PhysRevD.93.082001
Measurement of the high-energy gamma-ray emission from the Moon with the Fermi Large Area TelescopeCited by: 24
Author(s): M. Ackermann, M. Ajello, A. Albert, W. B. Atwood, Luca Baldini, G. Barbiellini, D. Bastieri, R. Bellazzini, E. Bissaldi, R. D. Blandford, R. Bonino, E. Bottacini, J. Bregeon, Pascal Bruel, R. Buehler, G. A. Caliandro, R. A. Cameron, M. Caragiulo, P. A. Caraveo, E. Cavazzuti, C. Cecchi, A. Chekhtman, J. Chiang, G. Chiaro, S. Ciprini, R. Claus, J. Cohen-Tanugi, F. Costanza, A. Cuoco, S. Cutini, F. D’Ammando, A. De Angelis, F. de Palma, R. Desiante, S. W. Digel, L. Di Venere, P. S. Drell, C. Favuzzi, S. J. Fegan, W. B. Focke, A. Franckowiak, S. Funk, P. Fusco, F. Gargano, D. Gasparrini, N. Giglietto, F. Giordano, M. Giroletti, T. Glanzman, G. Godfrey, I. A. Grenier, J. E. Grove, S. Guiriec, A. K. Harding, J. W. Hewitt, D. Horan, X. Hou, G. Iafrate, G. Jóhannesson, T. Kamae, M. Kuss, Stefan Larsson, L. Latronico, J. Li, L. Li, F. Longo, F. Loparco, M. N. Lovellette, P. Lubrano, J. D. Magill, S. Maldera, Alberto Manfreda, M. Mayer, M. N. Mazziotta, P. F. Michelson, W. Mitthumsiri, T. Mizuno, M. E. Monzani, A. Morselli, S. Murgia, E. Nuss, N. Omodei, E. Orlando, J. F. Ormes, D. Paneque, J. S. Perkins, M. Pesce-Rollins, V. Petrosian, F. Piron, G. Pivato, S. Rainò, R. Rando, M. Razzano, A. Reimer, O. Reimer, T. Reposeur, C. Sgrò, E. J. Siskind, F. Spada, G. Spandre, P. Spinelli, H. Takahashi, J. B. Thayer, D. J. Thompson, L. Tibaldo, D. F. Torres, G. Tosti, E. Troja, G. Vianello, B. L. Winer, K. S. Wood, M. Yassine, F. Cerutti, A. Ferrari, P. Sala
Software Mentions: 1
Published: over 8 years ago
10.1080/09537104.2018.1543865
Investigation of the contribution of an underlying platelet defect in women with unexplained heavy menstrual bleedingCited by: 8
Author(s): Gillian Lowe, Roksana Fickowska, Rashid Al Ghaithi, Annabel Maclachlan, Paul Harrison, William A. Lester, Steve P. Watson, Bethan Myers, T. Justin Clark, Neil V. Morgan
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.pmed.0030228
“Key to the Future”: British American Tobacco and Cigarette Smuggling in ChinaCited by: 68
Author(s): Kelley Lee, Jeff Collin
Software Mentions: 1
Published: about 18 years ago
10.1371/journal.pone.0068242
New Metrics for Comparison of Taxonomies Reveal Striking Discrepancies among Species Delimitation Methods in Madascincus LizardsCited by: 161
Author(s): Aurélien Miralles, Miguel Vences
Software Mentions: 1
Published: about 11 years ago
10.1371/journal.pone.0140682
Quantifying the Human Impacts on Papua New Guinea Reef Fish Communities across Space and TimeCited by: 13
Author(s): Joshua Adam Drew, Kathryn L. Amatangelo, Ruth A. Hufbauer
Software Mentions: 1
Published: almost 9 years ago
10.1371/journal.pone.0128276
The Colonisation of Exotic Species Does Not Have to Trigger Faunal Homogenisation: Lessons from the Assembly Patterns of Arthropods on Oceanic IslandsCited by: 19
Author(s): Margarita Florencio, Jorge M. Lobo, Pedro Cardoso, Mário Almeida‐Neto, Paulo A. V. Borges
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0049198
Formalization, Annotation and Analysis of Diverse Drug and Probe Screening Assay Datasets Using the BioAssay Ontology (BAO)Cited by: 53
Author(s): Uma D. Vempati, Magdalena J. Przydzial, Caty Chung, Saminda Abeyruwan, Ahsan Mir, Kazuhiko Sakurai, Ubbo Visser, Vance Lemmon, Stephan C. Schürer
Software Mentions: 1
Published: almost 12 years ago
10.1140/epjc/s10052-017-5270-2
On flavourful Easter eggs for New Physics hunger and lepton flavour universality violationCited by: 199
Author(s): M. Ciuchini, António M. Coutinho, Marco Fedele, E. Franco, Ayan Paul, L. Silvestrini, Mauro Valli
Software Mentions: 1
Published: about 7 years ago
10.3389/fmed.2020.00138
Clinical Characteristics of Secondary Immune Thrombocytopenia Associated With Primary Sjögren's SyndromeCited by: 10
Author(s): Fan Dai, Ge Yang, Peishi Rao, Puqi Wu, Rongjuan Chen, Sun Yan, Yun Peng, Hongyan Qian, Bin Wang, Shiju Chen, Yuan Liu, Guixiu Shi
Software Mentions: 1
Published: over 4 years ago
10.3389/fnins.2015.00197
Current conceptual challenges in the study of rhythm processing deficitsCited by: 4
Author(s): Pauline Tranchant, Dominique T. Vuvan
Software Mentions: 1
Published: over 9 years ago
10.3389/fnins.2021.733316
The Vital Role of Central Executive Network in Brain Age: Evidence From Machine Learning and Transcriptional SignaturesCited by: 6
Author(s): Keke Fang, Shaoqiang Han, Yuming Li, Jing Ding, Jilian Wu, Wenzhou Zhang
Software Mentions: 1
Published: about 3 years ago
10.3389/fpsyg.2020.01819
Validation of the Japanese Version of the Burnout Assessment ToolCited by: 36
Author(s): Keiko Sakakibara, Akihito Shimazu, Hiroyuki Toyama, Wilmar B. Schaufeli
Software Mentions: 1
Published: about 4 years ago
10.1186/s13059-019-1817-x
Robust taxonomic classification of uncharted microbial sequences and bins with CAT and BATCited by: 234
Author(s): F. A. Bastiaan von Meijenfeldt, Ksenia Arkhipova, Diego D. Cambuy, Felipe H. Coutinho, Bas E. Dutilh
Software Mentions: 1
Published: almost 5 years ago
10.1002/ieam.4401
A critical review and weight of evidence approach for assessing the bioaccumulation of phenanthrene in aquatic environmentsCited by: 8
Author(s): James M. Armitage, Liisa Toose, Louise Camenzuli, Aaron D. Redman, Thomas F. Parkerton, David Saunders, James R. Wheeler, A. V. M. Martin, Eleni Vaiopoulou, Jon A. Arnot
Software Mentions: 1
Published: over 3 years ago
10.1120/jacmp.v8i3.2714
Abstracts of the 2007 Young Invesigators SymposiumCited by: 0
Author(s):
Software Mentions: 1
Published: over 17 years ago
10.1120/jacmp.v8i3.2268
Comparing computed tomography localization with daily ultrasound during image‐guided radiation therapy for the treatment of prostate cancer: a prospective evaluationCited by: 28
Author(s): Steven J. Feigenberg, K Paskalev, Shawn McNeeley, Eric M. Horwitz, André Konski, Lu Wang, Charlie Ma, Alan Pollack
Software Mentions: 1
Published: over 17 years ago
10.1155/2014/705604
Image Guidance in Radiation Therapy: Techniques and ApplicationsCited by: 66
Author(s): Shikha Goyal, Tejinder Kataria
Software Mentions: 1
Published: almost 11 years ago