Ecosyste.ms: Papers

10.1126/sciadv.1600760

Promiscuous targeting of bromodomains by bromosporine identifies BET proteins as master regulators of primary transcription response in leukemia
Cited by: 85
Author(s): S. Picaud, Katharina Leonards, Jean-Philippe Lambert, Oliver M. Dovey, Christopher Wells, Oleg Fedorov, Octovia Monteiro, Takao Fujisawa, Chenyi Wang, Hannah Lingard, C. Tallant, Nikzad Nikbin, Lucie Guetzoyan, Richard J. Ingham, Steven V. Ley, P.E. Brennan, Susanne Müller, Anastasia Samsonova, Anne‐Claude Gingras, Juerg Schwaller, George S. Vassiliou, Stefan Knapp, P. Filippakopoulos
Software Mentions: 10
Published: about 8 years ago

10.1186/s13059-016-1043-8

Topoisomerase II beta interacts with cohesin and CTCF at topological domain borders
Cited by: 184
Author(s): Liis Uusküla-Reimand, Huayun Hou, Payman Samavarchi-Tehrani, Matteo Vietri Rudan, Minggao Liang, Alejandra Medina-Rivera, Hisham Mohammed, Dominic Schmidt, Petra Schwalie, Edwin J. Young, Jüri Reimand, Suzana Hadjur, Anne‐Claude Gingras, Michael D. Wilson
Software Mentions: 8
Published: about 8 years ago

10.1186/1471-2105-10-364

multiplierz: an extensible API based desktop environment for proteomics data analysis
Cited by: 63
Author(s): Jignesh R. Parikh, Manor Askenazi, Scott B. Ficarro, Tanya Cashorali, James T. Webber, Nathaniel C. Blank, Yi Zhang, Jarrod A. Marto
Software Mentions: 6
Published: about 15 years ago

10.1371/journal.pgen.1008511

JMJD6 participates in the maintenance of ribosomal DNA integrity in response to DNA damage
Cited by: 11
Author(s): Jérémie Fages, Catherine Chailleux, Jonathan Humbert, Suk-Min Jang, Jérémy Loehr, Jean-Philippe Lambert, Jacques Côté, Didier Trouche, Yvan Canitrot
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pcbi.1004401

TRANSIT - A Software Tool for Himar1 TnSeq Analysis
Cited by: 158
Author(s): Michael A. DeJesus, Chaitra Ambadipudi, Richard E. Baker, Christopher M. Sassetti, Thomas R. Ioerger
Software Mentions: 5
Published: about 9 years ago

10.1038/s41598-021-91684-4

Peptide profiling in cow urine reveals molecular signature of physiology-driven pathways and in-silico predicted bioactive properties
Cited by: 6
Author(s): Rohit Kumar, Syed Azmal Ali, Sumit Kumar Singh, Vanya Bhushan, Jai K. Kaushik, Ashok Kumar Mohanty, Sanjay Kumar
Software Mentions: 5
Published: over 3 years ago

10.1038/s41598-021-81740-4

Multi-Q 2 software facilitates isobaric labeling quantitation analysis with improved accuracy and coverage
Cited by: 3
Author(s): Ching-Tai Chen, Jen-Hung Wang, Cheng-Wei Cheng, Wei-Che Hsu, Chu-Ling Ko, Wai-Kok Choong, Ting‐Yi Sung
Software Mentions: 5
Published: almost 4 years ago

10.1016/j.bbapap.2013.02.032

Open source libraries and frameworks for mass spectrometry based proteomics: A developer's perspective
Cited by: 67
Author(s): Yasset Perez‐Riverol, Rui Wang, Henning Hermjakob, Markus Müller, Vladimir Vesada, Juan Antonio Vizcaíno
Software Mentions: 5
Published: almost 11 years ago

10.1371/journal.pntd.0006351

Development of a Trypanosoma cruzi strain typing assay using MS2 peptide spectral libraries (Tc-STAMS2)
Cited by: 9
Author(s): Gilberto Santos de Oliveira, Rebeca Kawahara, Lívia Rosa-Fernandes, Simon Ngao Mule, Carla Cristi Avila, Marta Maria Geraldes Teixeira, Martin R. Larsen, Giuseppe Palmisano
Software Mentions: 4
Published: over 6 years ago

10.3389/fcell.2019.00299

Comprehensive Identification and Characterization of Human Secretome Based on Integrative Proteomic and Transcriptomic Data
Cited by: 23
Author(s): Geng Chen, Jiwei Chen, Huanlong Liu, Shuangguan Chen, Yang Zhang, Peng Li, Danielle Thierry-Mieg, Jean Thierry‐Mieg, William B. Mattes, Baitang Ning, Tieliu Shi
Software Mentions: 4
Published: about 5 years ago

10.18632/oncotarget.24418

Quantitative mass spectrometry analysis reveals a panel of nine proteins as diagnostic markers for colon adenocarcinomas
Cited by: 17
Author(s): Apurva Atak, S. K. Khurana, Kishore Gollapalli, Panga Jaipal Reddy, Roei Levy, Stav Ben-Salmon, Dror Hollander, Maya Donyo, Anke Heit, Agnes Hotz‐Wagenblatt, Hadas Biran, Roded Sharan, Shailendra Rane, Ashutosh Shelar, Gil Ast, Sanjeeva Srivastava
Software Mentions: 4
Published: almost 7 years ago

10.3390/molecules26072027

Discovery of Post-Translational Modifications in Emiliania huxleyi
Cited by: 2
Author(s): Van-An Duong, Onyou Nam, EonSeon Jin, Jong Park, Hookeun Lee
Software Mentions: 4
Published: over 3 years ago

10.3389/fnut.2020.00150

High-Resolution Mass Spectrometer–Based Ultra-Deep Profile of Milk Whey Proteome in Indian Zebu (Sahiwal) Cattle
Cited by: 17
Author(s): Alka Chopra, Syed Azmal Ali, Shveta Bathla, Preeti Rawat, Vikas Vohra, Sudarshan Kumar, Ashok Kumar Mohanty
Software Mentions: 4
Published: about 4 years ago

10.3390/ijms22094864

Characterization of Extracellular Vesicle Cargo in Sjögren’s Syndrome through a SWATH-MS Proteomics Approach
Cited by: 11
Author(s): Francesco Finamore, Antonella Cecchettini, Elisa Ceccherini, Giovanni Signore, Francesco Ferro, Silvia Rocchiccioli, Chiara Baldini
Software Mentions: 4
Published: over 3 years ago

10.1186/1471-2105-12-468

openBIS: a flexible framework for managing and analyzing complex data in biology research
Cited by: 105
Author(s): Angela Bauch, Izabela Adamczyk, Piotr Buczek, Franz-Josef Elmer, Kaloyan Enimanev, Pawel Glyzewski, Manuel Kohler, Tomasz Pylak, Andreas Quandt, Chandrasekhar Ramakrishnan, Christian Beisel, Lars Malmström, Ruedi Aebersold, Bernd Rinn
Software Mentions: 4
Published: almost 13 years ago

10.1186/1471-2105-12-439

SCFIA: a statistical corresponding feature identification algorithm for LC/MS
Cited by: 8
Author(s): Jian Cui, Xuepo Ma, Long Chen, Jianqiu Zhang
Software Mentions: 4
Published: about 13 years ago

10.15252/msb.20188242

Thermal proteome profiling in bacteria: probing protein state <i>in vivo</i>
Cited by: 117
Author(s): André Mateus, Jacob Bobonis, Nils Kurzawa, Frank Stein, Dominic Helm, Johannes F. Hevler, Athanasios Typas, Mikhail M. Savitski
Software Mentions: 3
Published: over 6 years ago

10.1186/s12859-014-0441-8

APP: an Automated Proteomics Pipeline for the analysis of mass spectrometry data based on multiple open access tools
Cited by: 14
Author(s): Erik Malm, Vaibhav Srivastava, Gustav Sundqvist, Vincent Bulone
Software Mentions: 3
Published: almost 10 years ago

10.1186/1471-2105-9-446

Envelope: interactive software for modeling and fitting complex isotope distributions
Cited by: 10
Author(s): Michael T. Sykes, James R. Williamson
Software Mentions: 3
Published: about 16 years ago

10.1371/journal.pone.0121314

A Mass Spectrometric-Derived Cell Surface Protein Atlas
Cited by: 306
Author(s): Damaris Bausch-Fluck, Andreas Hofmann, Thomas Bock, Andreas P. Frei, Ferdinando Cerciello, Andrea Jacobs, Hansjoerg Moest, Ulrich Omasits, Rebekah L. Gundry, Charles Yoon, Ralph Schiess, Alexander Schmidt, Paulina Mirkowska, Anetta Härtlová, Jennifer E. Van Eyk, Jean‐Pierre Bourquin, Ruedi Aebersold, Kenneth R. Boheler, Peter W. Zandstra, Bernd Wollscheid
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pone.0199649

A comparative analysis of label-free liquid chromatography-mass spectrometry liver proteomic profiles highlights metabolic differences between pig breeds
Cited by: 13
Author(s): Samuele Bovo, Alessio Di Luca, Giuliano Galimberti, Stefania Dall’Olio, Luca Fontanesi
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0051748

Integrative Proteomics and Tissue Microarray Profiling Indicate the Association between Overexpressed Serum Proteins and Non-Small Cell Lung Cancer
Cited by: 59
Author(s): Yansheng Liu, Xiangyang Luo, Haichuan Hu, Rui Wang, Yihua Sun, Rong Zeng, Haiquan Chen
Software Mentions: 3
Published: almost 12 years ago

10.1371/journal.pone.0084482

Cdk5 Phosphorylates Dopamine D2 Receptor and Attenuates Downstream Signaling
Cited by: 20
Author(s): Jong Ju Jeong, Young-Un Park, Dae-Kyum Kim, Saebom Lee, Yongdo Kwak, Seol-Ae Lee, Haeryun Lee, Yoo-Hun Suh, Yong Song Gho, Daehee Hwang, Sang Ki Park
Software Mentions: 3
Published: almost 11 years ago

10.1186/s40169-015-0064-3

A proteomic profiling of laser‐microdissected lung adenocarcinoma cells of early lepidic‐types
Cited by: 14
Author(s): Yasufumi Kato, Hiroki Nakamura, Hiromasa Tojo, Masatoshi Nomura, Toshitaka Nagao, Takeshi Kawamura, Tatsuhiko Kodama, Tetsuya Ohira, Norihiko Ikeda, Thomas E. Fehniger, György Markó-Varga, Toshihide Nishimura, Harubumi Kato
Software Mentions: 3
Published: over 9 years ago

10.1002/pmic.201400302

Making proteomics data accessible and reusable: Current state of proteomics databases and repositories
Cited by: 165
Author(s): Yasset Perez‐Riverol, Emanuele Alpi, Rui Wang, Henning Hermjakob, Juan Antonio Vizcaíno
Software Mentions: 3
Published: over 9 years ago

10.1016/j.redox.2020.101491

Comprehensive chemical proteomics for target deconvolution of the redox active drug auranofin
Cited by: 55
Author(s): Amir Ata Saei, Hjalmar Gullberg, Pierre Sabatier, Christian M. Beusch, Katarina Johansson, Bo Lundgren, Per I. Arvidsson, Elias S.J. Arnér, Roman A. Zubarev
Software Mentions: 3
Published: over 4 years ago

10.1038/s41598-017-08436-6

Disrupting glutamine metabolic pathways to sensitize gemcitabine-resistant pancreatic cancer
Cited by: 65
Author(s): Ru Chen, Lisa A. Lai, Yumi Sullivan, Melissa H. Wong, Lei Wang, Jonah Riddell, L. Jung, Venu G. Pillarisetty, Teresa A. Brentnall, Sheng Pan
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-018-30578-4

Snake Venom Extracellular vesicles (SVEVs) reveal wide molecular and functional proteome diversity
Cited by: 18
Author(s): Victor Corassolla Carregari, Lívia Rosa-Fernandes, Paulo A. Baldasso, Sérgio Paulo Bydlowski, Sérgio Marangoni, Martin R. Larsen, Giuseppe Palmisano
Software Mentions: 3
Published: over 6 years ago

10.1186/1751-0473-7-1

Yabi: An online research environment for grid, high performance and cloud computing
Cited by: 98
Author(s): Adam Hunter, Andrew B Macgregor, Tamás Szabó, Crispin A Wellington, M. Bellgard
Software Mentions: 3
Published: almost 13 years ago

10.3390/toxins11030167

The Dual Prey-Inactivation Strategy of Spiders—In-Depth Venomic Analysis of Cupiennius salei
Cited by: 31
Author(s): Lucia Kuhn‐Nentwig, Nicolas Langenegger, Manfred Heller, Dominique Koua, Wolfgang Nentwig
Software Mentions: 3
Published: over 5 years ago

10.18632/oncotarget.17279

Proteomics analysis of bladder cancer invasion: Targeting EIF3D for therapeutic intervention
Cited by: 27
Author(s): Agnieszka Latosinska, Marika Mokou, Manousos Makridakis, William Mullen, Jérôme Zoidakis, Vasiliki Lygirou, Maria Frantzi, Ioannis Katafigiotis, Konstantinos Stravodimos, Marie C. Hupe, Maciej Dobrzyński, Walter Kölch, Axel S. Merseburger, Harald Mischak, Maria G. Roubelakis, Antonia Vlahou
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0208973

Temporal dynamics of liver mitochondrial protein acetylation and succinylation and metabolites due to high fat diet and/or excess glucose or fructose
Cited by: 40
Author(s): Jesse G. Meyer, Samir Softic, Nathan Basisty, Rardin Mj, Eric Verdin, Gibson Bw, Olga Ilkayeva, Newgard Cb, Kahn Cr, Birgit Schilling
Software Mentions: 2
Published: almost 6 years ago

10.1186/1471-2105-12-S1-S46

High-throughput peptide quantification using mTRAQ reagent triplex
Cited by: 14
Author(s): Joo Young Yoon, Jeonghun Yeom, Heebum Lee, Kyutae Kim, Seungjin Na, Kunsoo Park, Eunok Paek, Cheolju Lee
Software Mentions: 2
Published: almost 14 years ago

10.7554/eLife.01119

Inflammation produces catecholamine resistance in obesity via activation of PDE3B by the protein kinases IKKε and TBK1
Cited by: 112
Author(s): Jonathan Mowers, Maeran Uhm, Shannon M. Reilly, Joshua Simon, Dara Leto, Shian Huey Chiang, Louise Chang, Alan R. Saltiel
Software Mentions: 2
Published: almost 11 years ago

10.1186/1471-2105-13-S16-S1

A statistical model-building perspective to identification of MS/MS spectra with PeptideProphet
Cited by: 87
Author(s): Keping Ma, Olga Vitek, Alexey I. Nesvizhskii
Software Mentions: 2
Published: about 12 years ago

10.3390/biomedicines9091156

Apolipoprotein Signature of HDL and LDL from Atherosclerotic Patients in Relation with Carotid Plaque Typology: A Preliminary Report
Cited by: 3
Author(s): Francesco Finamore, G. Nieddu, Silvia Rocchiccioli, Rita Spirito, Anna Guarino, Marilena Formato, Antonio Junior Lepedda
Software Mentions: 2
Published: about 3 years ago

10.3389/fmed.2021.666554

Recent Progress in Lyme Disease and Remaining Challenges
Cited by: 42
Author(s): Jason Bobe, Brandon L. Jutras, Elizabeth J. Horn, Monica E. Embers, Allison Bailey, Robert L. Moritz, Ying Zhang, Mark J. Soloski, Richard S. Ostfeld, Richard T. Marconi, John N. Aucott, Avi Ma’ayan, Felicia Keesing, Kim Lewis, Choukri Ben Mamoun, Mecaila E. McClune, Edward B. Breitschwerdt, Panga Jaipal Reddy, Ricardo G. Maggi, Frank Yang, Bennett Nemser, Aydogan Özcan, Omai B. Garner, Dino Di Carlo, Zachary S. Ballard, Hyou-Arm Joung, Albert Garcia-Romeu, Roland R. Griffiths, Nicole Baumgarth, Brian A. Fallon
Software Mentions: 2
Published: over 3 years ago

10.1136/bmj.n628

Association between living with children and outcomes from covid-19: OpenSAFELY cohort study of 12 million adults in England
Cited by: 54
Author(s): Harriet Forbes, Caroline E Morton, Seb Bacon, Helen I McDonald, Caroline Minassian, Jeremy Brown, Christopher T Rentsch, Rohini Mathur, Anna Schultze, Nicholas J DeVito, Brian MacKenna, William Hulme, Richard Croker, Alex J Walker, Elizabeth Williamson, Chris Bates, Amir Mehrkar, Helen J Curtis, David Evans, Kevin Wing, Peter Inglesby, Henry Drysdale, Angel Wong, Jonathan Cockburn, Robert McManus, John Parry, Frank Hester, Sam Harper, Ian Douglas, Liam Smeeth, Stephen Evans, Krishnan Bhaskaran, Rosalind M Eggo, Ben Goldacre, Laurie Tomlinson
Software Mentions: 2
Published: over 3 years ago

10.3389/fpls.2016.00820

Obligate Biotroph Pathogens of the Genus Albugo Are Better Adapted to Active Host Defense Compared to Niche Competitors
Cited by: 30
Author(s): Jonas Ruhe, Matthew T. Agler, Aleksandra Placzek, Katharina Kramer, Iris Finkemeier, Eric Kemen
Software Mentions: 2
Published: over 8 years ago

10.3390/genes12040476

Genome-Wide Identification of Genes Involved in Acid Stress Resistance of Salmonella Derby
Cited by: 8
Author(s): Danan Gu, Xue Han, Xiaohui Yuan, Jinyan Yu, Xiaomeng Xu, Yaoxian Huang, Mingzhu Li, Xianyue Zhai, Zhiming Pan, Yunzeng Zhang, Xinan Jiao
Software Mentions: 2
Published: over 3 years ago

10.1136/bmj.n1592

Risks of covid-19 hospital admission and death for people with learning disability: population based cohort study using the OpenSAFELY platform
Cited by: 64
Author(s): Elizabeth Williamson, Helen I McDonald, Krishnan Bhaskaran, Alex J Walker, Sebastian Bacon, Simon Davy, Anna Schultze, Laurie Tomlinson, Chris Bates, Mary Ramsay, Helen J Curtis, Harriet Forbes, Kevin Wing, Caroline Minassian, John Tazare, Caroline E Morton, Emily Nightingale, Amir Mehrkar, D Evans, Peter Inglesby, Brian MacKenna, Jonathan Cockburn, Christopher T Rentsch, Rohini Mathur, Angel Wong, Rosalind M Eggo, William Hulme, Richard Croker, John Parry, Frank Hester, Sam Harper, Ian Douglas, Stephen Evans, Liam Smeeth, Ben Goldacre, Hannah Kuper
Software Mentions: 2
Published: over 3 years ago

10.1128/JB.00548-20

Transposon Insertion Sequencing in a Clinical Isolate of Legionella pneumophila Identifies Essential Genes and Determinants of Natural Transformation
Cited by: 7
Author(s): L. Hardy, Pierre-Alexandre Juan, Bénédicte Coupat-Goutaland, Xavier Charpentier
Software Mentions: 2
Published: almost 4 years ago

10.1186/1471-2105-15-207

Automated peptide mapping and protein-topographical annotation of proteomics data
Cited by: 7
Author(s): Pavankumar Videm, Deepika Gunasekaran, Bernd Schröder, Bettina Mayer, Martin L. Biniossek, Oliver Schilling
Software Mentions: 2
Published: over 10 years ago

10.1186/1471-2105-9-529

The APEX Quantitative Proteomics Tool: Generating protein quantitation estimates from LC-MS/MS proteomics results
Cited by: 149
Author(s): John C. Braisted, Srilatha Kuntumalla, Christine Vogel, Edward M. Marcotte, Alan R. Rodrigues, Rong Wang, Shih Ting Huang, Erik S. Ferlanti, Alexander I. Saeed, Robert Fleischmann, Scott N. Peterson, Rembert Pieper
Software Mentions: 2
Published: almost 16 years ago

10.15252/msb.20145728

Quantitative variability of 342 plasma proteins in a human twin population
Cited by: 283
Author(s): Yansheng Liu, Alfonso Buil, Ben C. Collins, Ludovic Gillet, Lorenz C. Blum, Lin Chen, Olga Vitek, Jeppe Mouritsen, Geneviève Lachance, Tim D. Spector, Emmanouil T. Dermitzakis, Ruedi Aebersold
Software Mentions: 2
Published: almost 10 years ago

10.15252/msb.20199232

Thermal proteome profiling for interrogating protein interactions
Cited by: 117
Author(s): André Mateus, Nils Kurzawa, Isabelle Becher, S. Sridharan, Dominic Helm, Frank Stein, Athanasios Typas, Mikhail M. Savitski
Software Mentions: 2
Published: over 4 years ago

10.3934/publichealth.2017.6.557

Tea Party Health Narratives and Belief Polarization: the Journey to Killing Grandma
Cited by: 4
Author(s): Kristin Haltinner, Dilshani Sarathchandra
Software Mentions: 2
Published: almost 8 years ago

10.12688/wellcomeopenres.16737.1

Identifying Care Home Residents in Electronic Health Records - An OpenSAFELY Short Data Report
Cited by: 17
Author(s): Anna Schultze, Chris Bates, Jonathan Cockburn, Brian MacKenna, Emily Nightingale, Helen J Curtis, William Hulme, Caroline E Morton, Richard Croker, Seb Bacon, Helen I McDonald, Christopher T Rentsch, Krishnan Bhaskaran, Rohini Mathur, Laurie Tomlinson, Elizabeth Williamson, Harriet Forbes, John Tazare, Daniel Grint, Alex J Walker, Peter Inglesby, Nicholas J DeVito, Amir Mehrkar, George Hickman, Simon Davy, Tom Ward, Louis Fisher, David Evans, Kevin Wing, Angel Wong, Robert McManus, John Parry, Frank Hester, Sam Harper, Stephen Evans, Ian Douglas, Liam Smeeth, Rosalind M Eggo
Software Mentions: 2
Published: over 3 years ago

10.1111/mpp.12754

Identification by Tn‐seq of <i>Dickeya dadantii </i>genes required for survival in chicory plants
Cited by: 35
Author(s): Kévin Royet, Nicolas Parisot, Agnès Rodrigue, Erwan Gueguen, Guy Condemine
Software Mentions: 2
Published: about 6 years ago

10.1016/j.lanepe.2021.100109

Factors associated with deaths due to COVID-19 versus other causes: population-based cohort analysis of UK primary care data and linked national death registrations within the OpenSAFELY platform
Cited by: 98
Author(s): Krishnan Bhaskaran, Sebastian Bacon, Stephen Evans, Chris Bates, Christopher T Rentsch, Brian MacKenna, Laurie Tomlinson, Alex J Walker, Anna Schultze, Caroline E Morton, Daniel Grint, Amir Mehrkar, Rosalind M Eggo, Peter Inglesby, Ian Douglas, Helen I McDonald, Jonathan Cockburn, Elizabeth Williamson, David Evans, Helen J Curtis, William J Hulme, John Parry, Frank Hester, Sam Harper, David Spiegelhalter, Liam Smeeth
Software Mentions: 2
Published: over 3 years ago

10.1016/S0140-6736(21)00634-6

Ethnic differences in SARS-CoV-2 infection and COVID-19-related hospitalisation, intensive care unit admission, and death in 17 million adults in England: an observational cohort study using the OpenSAFELY platform
Cited by: 299
Author(s): Rohini Mathur, Christopher T Rentsch, Caroline E Morton, William Hulme, Anna Schultze, Brian MacKenna, Rosalind M Eggo, Krishnan Bhaskaran, Angel Wong, Elizabeth Williamson, Harriet Forbes, Kevin Wing, Helen I McDonald, Chris Bates, Seb Bacon, Alex J Walker, David Evans, Peter Inglesby, Amir Mehrkar, Helen J Curtis, Nicholas J DeVito, Richard Croker, Henry Drysdale, Jonathan Cockburn, J. H. Parry, Frank Hester, Sam Harper, Ian Douglas, Laurie Tomlinson, Stephen Evans, Richard Grieve, David A Harrison, Kathy Rowan, Kamlesh Khunti, Nishi Chaturvedi, Liam Smeeth, Ben Goldacre
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0225885

Optimization of TripleTOF spectral simulation and library searching for confident localization of phosphorylation sites
Cited by: 4
Author(s): Ayano Takai, Tomoya Tsubosaka, Yasuhiro Hirano, Naoki Hayakawa, Fumitaka Tani, Pekka Haapaniemi, Veronika Suni, Susumu Y. Imanishi
Software Mentions: 2
Published: almost 5 years ago

10.1186/1471-2164-10-171

LC-MS/MS-based proteome profiling in Daphnia pulex and Daphnia longicephala: the Daphnia pulex genome database as a key for high throughput proteomics in Daphnia
Cited by: 43
Author(s): Thomas Fröhlich, Georg J. Arnold, R Fritsch, Tobias Mayr, Christian Laforsch
Software Mentions: 2
Published: over 15 years ago

10.1371/journal.pone.0235431

Identification and characterisation of thiamine pyrophosphate (TPP) riboswitch in Elaeis guineensis
Cited by: 6
Author(s): Atiqah Subki, Chai Ling Ho, Nur Farhah Nabihan Ismail, Aisamuddin Ardi Zainal Abidin, Zetty Norhana Balia Yusof
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0058285

Analysis of the Membrane Proteome of Ciprofloxacin-Resistant Macrophages by Stable Isotope Labeling with Amino Acids in Cell Culture (SILAC)
Cited by: 8
Author(s): Nancy E. Cáceres, Maarten Aerts, Béatrice Márquez, Marie‐Paule Mingeot‐Leclercq, Paul M. Tulkens, Bart Devreese, Françoise Van Bambeke
Software Mentions: 2
Published: over 11 years ago

10.1038/srep24103

Insights into the adaptive response of the plant-pathogenic oomycete Phytophthora capsici to the fungicide flumorph
Cited by: 8
Author(s): Zhi Pang, Lei Chen, Wei Mu, Li Liu, Xili Liu
Software Mentions: 2
Published: over 8 years ago