Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1126/sciadv.1600760

https://doi.org/10.1126/sciadv.1600760

Cited by: 85
Author(s): S. Picaud, Katharina Leonards, Jean-Philippe Lambert, Oliver M. Dovey, Christopher Wells, Oleg Fedorov, Octovia Monteiro, Takao Fujisawa, Chenyi Wang, Hannah Lingard, C. Tallant, Nikzad Nikbin, Lucie Guetzoyan, Richard J. Ingham, Steven V. Ley, P.E. Brennan, Susanne Müller, Anastasia Samsonova, Anne‐Claude Gingras, Juerg Schwaller, George S. Vassiliou, Stefan Knapp, P. Filippakopoulos
Published: over 7 years ago

Software Mentions 10

bioconductor: arrayQualityMetrics
Quality metrics report for microarray data sets
Papers that mentioned: 190
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: lumi
BeadArray Specific Methods for Illumina Methylation and Expression Microarrays
Papers that mentioned: 238
bioconductor: piano
Platform for integrative analysis of omics data
Papers that mentioned: 15
bioconductor: topGO
Enrichment Analysis for Gene Ontology
Papers that mentioned: 652
bioconductor: TPP
Analyze thermal proteome profiling (TPP) experiments
Papers that mentioned: 57
pypi: analysis
Source code analysis of Python programs
Papers that mentioned: 2,036
pypi: Comet
VOEvent Broker
Papers that mentioned: 248
pypi: piano
CMS built using Pyramid and MongoDB
Papers that mentioned: 15
pypi: TPP
Text PreProcessing libraries
Papers that mentioned: 57