Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: piano

https://packages.ecosyste.ms/registries/pypi.org/packages/piano

CMS built using Pyramid and MongoDB
3 versions
Latest release: over 12 years ago
44 downloads last month

Papers Mentioning piano 15

Using Network-Based Machine Learning to Predict Transcription Factors Involved in Drought Resistance
Cited by: 11
Author(s): Chirag Gupta, Venkategowda Ramegowda, Supratim Basu, Andy Pereira
Software Mentions: 13
Published: over 3 years ago

10.1126/sciadv.1600760

Promiscuous targeting of bromodomains by bromosporine identifies BET proteins as master regulators of primary transcription response in leukemia
Cited by: 85
Author(s): S. Picaud, Katharina Leonards, Jean-Philippe Lambert, Oliver M. Dovey, Christopher Wells, Oleg Fedorov, Octovia Monteiro, Takao Fujisawa, Chenyi Wang, Hannah Lingard, C. Tallant, Nikzad Nikbin, Lucie Guetzoyan, Richard J. Ingham, Steven V. Ley, P.E. Brennan, Susanne Müller, Anastasia Samsonova, Anne‐Claude Gingras, Juerg Schwaller, George S. Vassiliou, Stefan Knapp, P. Filippakopoulos
Software Mentions: 10
Published: about 8 years ago

10.1371/journal.pcbi.1008778

Interspecies chimeric conditions affect the developmental rate of human pluripotent stem cells
Cited by: 4
Author(s): Jared Brown, Christopher Barry, Matthew T. Schmitz, Cara Argus, Jennifer M. Bolin, Michael P. Schwartz, Amy Van Aartsen, John Steill, Scott Swanson, Ron Stewart, James A. Thomson, Christina Kendziorski
Software Mentions: 9
Published: over 3 years ago

10.3389/fpls.2021.675760

Genotype-Specific Expression and NLR Repertoire Contribute to Phenotypic Resistance Diversity in Plantago lanceolata
Cited by: 4
Author(s): Pezhman Safdari, Layla Höckerstedt, Mikael Brosché, Jarkko Salojärvi, Anna‐Liisa Laine
Software Mentions: 8
Published: over 3 years ago

10.1186/s13068-018-1116-x

Complete genome sequence and the expression pattern of plasmids of the model ethanologen Zymomonas mobilis ZM4 and its xylose-utilizing derivatives 8b and 2032
Cited by: 54
Author(s): Shihui Yang, Jessica M. Vera, Jeff Grass, Giannis Savvakis, Oleg V. Moskvin, Yongqiang Yang, Sean J. McIlwain, Yucai Lyu, Irene Zinonos, Alexander S. Hebert, Joshua J. Coon, Donna M. Bates, Trey K. Sato, Steven D. Brown, Michael E. Himmel, Min Zhang, Robert Landick, Katherine M. Pappas, Yaoping Zhang
Software Mentions: 6
Published: over 6 years ago

10.3389/fgene.2018.00052

Gene Expression Meta-Analysis of Seven Candidate Gene Sets for Diabetes Traits Following a GWAS Pathway Study
Cited by: 2
Author(s): Hao Mei, Lianna Li, Michael Griswold, Thomas H. Mosley
Software Mentions: 6
Published: almost 7 years ago

10.1093/femsyr/foab011

Transcriptomic response of Saccharomyces cerevisiae to octanoic acid production
Cited by: 2
Author(s): Leonie Baumann, Tyler W. Doughty, Verena Siewers, Jens Nielsen, Eckhard Boles, Mislav Oreb
Software Mentions: 5
Published: almost 4 years ago

10.1186/s13073-017-0432-2

Type 2 diabetes and obesity induce similar transcriptional reprogramming in human myocytes
Cited by: 33
Author(s): Leif Väremo, Tora Ida Henriksen, Camilla Schéele, Christa Broholm, Maria Pedersen, Mathias Uhlén, Bente Klarlund Pedersen, Jens Nielsen
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.pone.0171046

Metabox: A Toolbox for Metabolomic Data Analysis, Interpretation and Integrative Exploration
Cited by: 79
Author(s): Kwanjeera Wanichthanarak, Sili Fan, Dmitry Grapov, Dinesh Kumar Barupal, Oliver Fiehn
Software Mentions: 4
Published: almost 8 years ago

10.1038/s41598-020-60175-3

The reduction of DSS-induced colitis severity in mice exposed to cigarette smoke is linked to immune modulation and microbial shifts
Cited by: 18
Author(s): Giuseppe Lo Sasso, Blaine Phillips, Alain Sewer, James N. D. Battey, Athanasios Kondylis, Marja Talikka, Bjoern Titz, Emmanuel Guedj, Dariusz Peric, David Bornand, Rémi Dulize, Céline Merg, Maica Corciulo, Sonia Ouadi, Rendy Yanuar, Ching Keong Tung, Nikolai V. Ivanov, Manuel C. Peitsch, Julia Hoeng
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0155099

Six Tissue Transcriptomics Reveals Specific Immune Suppression in Spleen by Dietary Polyunsaturated Fatty Acids
Cited by: 13
Author(s): Sara L. Svahn, Leif Väremo, Britt G. Gabrielsson, Eduard Peris, Intawat Nookaew, Louise Grahnemo, Ann‐Sofie Sandberg, Ingrid Wernstedt Asterholm, John‐Olov Jansson, Jens Nielsen, Maria Johansson
Software Mentions: 3
Published: over 8 years ago

10.1002/1878-0261.12525

Negative regulation of miR‐1275 by H3K27me3 is critical for glial induction of glioblastoma cells
Cited by: 12
Author(s): Jialuo Mai, Jiayu Gu, Ying Liu, Xincheng Liu, Ke Sai, Zhijie Chen, Wanjun Lu, Xiaozhi Yang, Jingyi Wang, Cui Guo, Shenghua Sun, Fan Xing, Longxiang Sheng, Bingzheng Lu, Zhu Zhu, Hongjiaqi Sun, Dongdong Xue, Yuan Lin, Jing Cai, Yaqian Tan, Chuntao Li, Wei Yin, Lin Cao, Ying Ouyang, Pengxin Qiu, Xingwen Su, Yan Gao, Jiankai Liang, Wenbo Zhu
Software Mentions: 3
Published: over 5 years ago

10.1016/j.csbj.2020.04.011

Multi-omics systems toxicology study of mouse lung assessing the effects of aerosols from two heat-not-burn tobacco products and cigarette smoke
Cited by: 21
Author(s): Bjoern Titz, Justyna Szostak, Alain Sewer, Blaine Phillips, Catherine Nury, Thomas Schneider, Sophie Dijon, Oksana Lavrynenko, Ashraf Elamin, Emmanuel Guedj, Ee Tsin Wong, Stefan Lebrun, Grégory Vuillaume, Athanasios Kondylis, Sylvain Gubian, Stéphane Cano, Patrice Leroy, Brian Keppler, Nikolai V. Ivanov, Patrick Vanscheeuwijck, Florian Martin, Manuel C. Peitsch, Julia Hoeng
Software Mentions: 3
Published: almost 5 years ago

10.3390/ijms19041095

Global Transcriptome Analysis of Brown Adipose Tissue of Diet-Induced Obese Mice
Cited by: 17
Author(s): Jingyi Cao, Qi Zhu, Lin Liu, Bradley J Glazier, Benjamin C Hinkel, Chun Liang, Haifei Shi
Software Mentions: 3
Published: over 6 years ago

10.7554/eLife.49631

Stimulation of Piezo1 by mechanical signals promotes bone anabolism
Cited by: 166
Author(s): Xuehua Li, Li Han, Intawat Nookaew, Erin M. Mannen, Matthew J. Silva, Maria Almeida, Jinhu Xiong
Software Mentions: 2
Published: about 5 years ago