Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: piano
https://packages.ecosyste.ms/registries/bioconductor.org/packages/piano
Platform for integrative analysis of omics data
1 version
Latest release: about 1 year ago
3 dependent packages
62,375 downloads total
Papers Mentioning piano 15
10.3389/fgene.2021.652189
Using Network-Based Machine Learning to Predict Transcription Factors Involved in Drought ResistanceCited by: 11
Author(s): Chirag Gupta, Venkategowda Ramegowda, Supratim Basu, Andy Pereira
Software Mentions: 13
Published: over 3 years ago
10.1126/sciadv.1600760
Promiscuous targeting of bromodomains by bromosporine identifies BET proteins as master regulators of primary transcription response in leukemiaCited by: 85
Author(s): S. Picaud, Katharina Leonards, Jean-Philippe Lambert, Oliver M. Dovey, Christopher Wells, Oleg Fedorov, Octovia Monteiro, Takao Fujisawa, Chenyi Wang, Hannah Lingard, C. Tallant, Nikzad Nikbin, Lucie Guetzoyan, Richard J. Ingham, Steven V. Ley, P.E. Brennan, Susanne Müller, Anastasia Samsonova, Anne‐Claude Gingras, Juerg Schwaller, George S. Vassiliou, Stefan Knapp, P. Filippakopoulos
Software Mentions: 10
Published: about 8 years ago
10.1371/journal.pcbi.1008778
Interspecies chimeric conditions affect the developmental rate of human pluripotent stem cellsCited by: 4
Author(s): Jared Brown, Christopher Barry, Matthew T. Schmitz, Cara Argus, Jennifer M. Bolin, Michael P. Schwartz, Amy Van Aartsen, John Steill, Scott Swanson, Ron Stewart, James A. Thomson, Christina Kendziorski
Software Mentions: 9
Published: over 3 years ago
10.3389/fpls.2021.675760
Genotype-Specific Expression and NLR Repertoire Contribute to Phenotypic Resistance Diversity in Plantago lanceolataCited by: 4
Author(s): Pezhman Safdari, Layla Höckerstedt, Mikael Brosché, Jarkko Salojärvi, Anna‐Liisa Laine
Software Mentions: 8
Published: over 3 years ago
10.1186/s13068-018-1116-x
Complete genome sequence and the expression pattern of plasmids of the model ethanologen Zymomonas mobilis ZM4 and its xylose-utilizing derivatives 8b and 2032Cited by: 54
Author(s): Shihui Yang, Jessica M. Vera, Jeff Grass, Giannis Savvakis, Oleg V. Moskvin, Yongqiang Yang, Sean J. McIlwain, Yucai Lyu, Irene Zinonos, Alexander S. Hebert, Joshua J. Coon, Donna M. Bates, Trey K. Sato, Steven D. Brown, Michael E. Himmel, Min Zhang, Robert Landick, Katherine M. Pappas, Yaoping Zhang
Software Mentions: 6
Published: over 6 years ago
10.3389/fgene.2018.00052
Gene Expression Meta-Analysis of Seven Candidate Gene Sets for Diabetes Traits Following a GWAS Pathway StudyCited by: 2
Author(s): Hao Mei, Lianna Li, Michael Griswold, Thomas H. Mosley
Software Mentions: 6
Published: over 6 years ago
10.1093/femsyr/foab011
Transcriptomic response of Saccharomyces cerevisiae to octanoic acid productionCited by: 2
Author(s): Leonie Baumann, Tyler W. Doughty, Verena Siewers, Jens Nielsen, Eckhard Boles, Mislav Oreb
Software Mentions: 5
Published: over 3 years ago
10.1186/s13073-017-0432-2
Type 2 diabetes and obesity induce similar transcriptional reprogramming in human myocytesCited by: 33
Author(s): Leif Väremo, Tora Ida Henriksen, Camilla Schéele, Christa Broholm, Maria Pedersen, Mathias Uhlén, Bente Klarlund Pedersen, Jens Nielsen
Software Mentions: 5
Published: over 7 years ago
10.1371/journal.pone.0171046
Metabox: A Toolbox for Metabolomic Data Analysis, Interpretation and Integrative ExplorationCited by: 79
Author(s): Kwanjeera Wanichthanarak, Sili Fan, Dmitry Grapov, Dinesh Kumar Barupal, Oliver Fiehn
Software Mentions: 4
Published: almost 8 years ago
10.1038/s41598-020-60175-3
The reduction of DSS-induced colitis severity in mice exposed to cigarette smoke is linked to immune modulation and microbial shiftsCited by: 18
Author(s): Giuseppe Lo Sasso, Blaine Phillips, Alain Sewer, James N. D. Battey, Athanasios Kondylis, Marja Talikka, Bjoern Titz, Emmanuel Guedj, Dariusz Peric, David Bornand, Rémi Dulize, Céline Merg, Maica Corciulo, Sonia Ouadi, Rendy Yanuar, Ching Keong Tung, Nikolai V. Ivanov, Manuel C. Peitsch, Julia Hoeng
Software Mentions: 4
Published: over 4 years ago
10.1371/journal.pone.0155099
Six Tissue Transcriptomics Reveals Specific Immune Suppression in Spleen by Dietary Polyunsaturated Fatty AcidsCited by: 13
Author(s): Sara L. Svahn, Leif Väremo, Britt G. Gabrielsson, Eduard Peris, Intawat Nookaew, Louise Grahnemo, Ann‐Sofie Sandberg, Ingrid Wernstedt Asterholm, John‐Olov Jansson, Jens Nielsen, Maria Johansson
Software Mentions: 3
Published: over 8 years ago
10.1002/1878-0261.12525
Negative regulation of miR‐1275 by H3K27me3 is critical for glial induction of glioblastoma cellsCited by: 12
Author(s): Jialuo Mai, Jiayu Gu, Ying Liu, Xincheng Liu, Ke Sai, Zhijie Chen, Wanjun Lu, Xiaozhi Yang, Jingyi Wang, Cui Guo, Shenghua Sun, Fan Xing, Longxiang Sheng, Bingzheng Lu, Zhu Zhu, Hongjiaqi Sun, Dongdong Xue, Yuan Lin, Jing Cai, Yaqian Tan, Chuntao Li, Wei Yin, Lin Cao, Ying Ouyang, Pengxin Qiu, Xingwen Su, Yan Gao, Jiankai Liang, Wenbo Zhu
Software Mentions: 3
Published: over 5 years ago
10.1016/j.csbj.2020.04.011
Multi-omics systems toxicology study of mouse lung assessing the effects of aerosols from two heat-not-burn tobacco products and cigarette smokeCited by: 21
Author(s): Bjoern Titz, Justyna Szostak, Alain Sewer, Blaine Phillips, Catherine Nury, Thomas Schneider, Sophie Dijon, Oksana Lavrynenko, Ashraf Elamin, Emmanuel Guedj, Ee Tsin Wong, Stefan Lebrun, Grégory Vuillaume, Athanasios Kondylis, Sylvain Gubian, Stéphane Cano, Patrice Leroy, Brian Keppler, Nikolai V. Ivanov, Patrick Vanscheeuwijck, Florian Martin, Manuel C. Peitsch, Julia Hoeng
Software Mentions: 3
Published: almost 5 years ago
10.3390/ijms19041095
Global Transcriptome Analysis of Brown Adipose Tissue of Diet-Induced Obese MiceCited by: 17
Author(s): Jingyi Cao, Qi Zhu, Lin Liu, Bradley J Glazier, Benjamin C Hinkel, Chun Liang, Haifei Shi
Software Mentions: 3
Published: over 6 years ago
10.7554/eLife.49631
Stimulation of Piezo1 by mechanical signals promotes bone anabolismCited by: 166
Author(s): Xuehua Li, Li Han, Intawat Nookaew, Erin M. Mannen, Matthew J. Silva, Maria Almeida, Jinhu Xiong
Software Mentions: 2
Published: about 5 years ago