pypi: PTP | Projects | Ecosyste.ms: Papers

10.3390/v6031112

Changes in Diversification Patterns and Signatures of Selection during the Evolution of Murinae-Associated Hantaviruses
Cited by: 16
Author(s): Guillaume Castel, Maria Razzauti, Emmanuelle Jousselin, Gaël J. Kergoat, Jean‐François Cosson
Software Mentions: 6
Published: over 10 years ago

10.3390/s20010237

Integrate Point-Cloud Segmentation with 3D LiDAR Scan-Matching for Mobile Robot Localization and Mapping
Cited by: 35
Author(s): Xuyou Li, Shitong Du, Guangchun Li, Haoyu Li
Software Mentions: 4
Published: almost 5 years ago

10.1186/s12862-018-1142-0

Phylogenomics provides a robust topology of the major cnidarian lineages and insights on the origins of key organismal traits
Cited by: 151
Author(s): Ehsan Kayal, Bastian Bentlage, M. Sabrina Pankey, Aki Ohdera, Mónica Medina, David C. Plachetzki, Allen G. Collins, Joseph F. Ryan
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0211285

Taxonomical over splitting in the Rhodnius prolixus (Insecta: Hemiptera: Reduviidae) clade: Are R. taquarussuensis (da Rosa et al., 2017) and R. neglectus (Lent, 1954) the same species?
Cited by: 44
Author(s): Juliana Damieli Nascimento, João Aristeu da Rosa, Fabian C. Salgado-Roa, Carolina Hernández, Carolina Pardo‐Díaz, Kaio Cesar Chaboli Alevi, Amanda Ravazi, Jader de Oliveira, Maria Tercília Vilela de Azeredo-Oliveira, Camilo Salazar, Juan David Ramírez
Software Mentions: 4
Published: almost 6 years ago

10.1186/s13071-018-3242-5

Cox1 barcoding versus multilocus species delimitation: validation of two mite species with contrasting effective population sizes
Cited by: 21
Author(s): Pavel B. Klimov, Maciej Skoracki, André V. Bochkov
Software Mentions: 3
Published: almost 6 years ago

10.1098/rstb.2015.0335

Multilocus inference of species trees and DNA barcoding
Cited by: 62
Author(s): Diego Mallo, David Posada
Software Mentions: 3
Published: about 8 years ago

10.1371/journal.pone.0146537

An Integrative Approach for Understanding Diversity in the Punctelia rudecta Species Complex (Parmeliaceae, Ascomycota)
Cited by: 35
Author(s): David Alors, H. Thorsten Lumbsch, Pradeep K. Divakar, Steven D. Leavitt, Ana Crespo
Software Mentions: 3
Published: almost 9 years ago

10.1111/2041-210X.12246

Effects of phylogenetic reconstruction method on the robustness of species delimitation using single‐locus data
Cited by: 169
Author(s): Cuong Q. Tang, Aelys M. Humphreys, Diego Fontaneto, Timothy G. Barraclough
Software Mentions: 3
Published: about 10 years ago

10.3390/s18124497

A Robust Approach to TDMA Synchronization in Aerial Networks
Cited by: 6
Author(s): Luis Ramos Pinto, Luís Almeida
Software Mentions: 3
Published: almost 6 years ago

10.3390/s21041540

Using Secure Multi-Party Computation to Protect Privacy on a Permissioned Blockchain
Cited by: 24
Author(s): Jiapeng Zhou, Yuxiang Feng, Zhenyu Wang, Danyi Guo
Software Mentions: 3
Published: over 3 years ago

10.3390/s150613945

Guaranteeing Isochronous Control of Networked Motion Control Systems Using Phase Offset Adjustment
Cited by: 11
Author(s): Ik-Hwan Kim, Taehyoun Kim
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0192349

Phylogeography and DNA-based species delimitation provide insight into the taxonomy of the polymorphic rose chafer Protaetia (Potosia) cuprea species complex (Coleoptera: Scarabaeidae: Cetoniinae) in the Western Palearctic
Cited by: 13
Author(s): Dominik Vondráček, Aneta Fuchsová, Dirk Ahrens, David Král, Petr Šípek
Software Mentions: 2
Published: almost 7 years ago

10.1093/bioinformatics/btt499

A general species delimitation method with applications to phylogenetic placements
Cited by: 1,827
Author(s): Jiajie Zhang, Paschalia Kapli, Pavlos Pavlidis, Alexandros Stamatakis
Software Mentions: 2
Published: about 11 years ago

10.7717/peerj.4941

A Pan-Amazonian species delimitation: high species diversity within the genusAmazophrynella(Anura: Bufonidae)
Cited by: 28
Author(s): Rommel R. Rojas, Antoine Fouquet, Santiago R. Ron, Emil José Hernández-Ruz, Paulo Roberto Melo-Sampaio, Juan C. Chaparro, Richard C. Vogt, Vinícius Tadeu de Carvalho, Leandra Cardoso Pinheiro, Róbson Waldemar Ávila, Izeni Pires Farias, Marcelo Gordo, Tomas Hrbek
Software Mentions: 2
Published: over 6 years ago

10.1186/s12862-016-0836-4

Discrete phenotypes are not underpinned by genome-wide genetic differentiation in the squat lobster Munida gregaria (Crustacea: Decapoda: Munididae): a multi-marker study covering the Patagonian shelf
Cited by: 6
Author(s): Chen Wang, Shobhit Agrawal, Jürgen Laudien, Vreni Häussermann, Christoph Held
Software Mentions: 2
Published: almost 8 years ago

10.7717/peerj.10804

Unexpected mitochondrial lineage diversity within the genus Alonella Sars, 1862 (Crustacea: Cladocera) across the Northern Hemisphere
Cited by: 12
Author(s): Anna N. Neretina, D. P. Karabanov, Veronika Sacherová, Alexey A. Kotov
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12862-016-0860-4

Evolutionary history of Podarcis tiliguerta on Corsica and Sardinia
Cited by: 6
Author(s): Virginia Rodríguez, Joana M. Buades, Richard P. Brown, Bàrbara Terrasa, Valentín Pérez‐Mellado, Claudia Corti, Michel Delaugerre, José A. Castro, A. Picornell, María M. Ramón
Software Mentions: 2
Published: almost 8 years ago

10.1186/s12862-017-0969-0

Pre-Quaternary divergence and subsequent radiation explain longitudinal patterns of genetic and morphological variation in the striped skink, Heremites vittatus
Cited by: 3
Author(s): Felix Baier, Andreas Schmitz, Hedwig Sauer‐Gürth, Michael Wink
Software Mentions: 2
Published: over 7 years ago

10.1186/s43008-020-00045-9

Naming the untouchable – environmental sequences and niche partitioning as taxonomical evidence in fungi
Cited by: 14
Author(s): Faheema Kalsoom Khan, Kerri L. Kluting, Jeanette Tångrot, Héctor Urbina, Tea Ammunét, Shadi Eshghi Sahraei, Martin Rydén, Martin Ryberg, Anna Rosling
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pone.0184017

Barcoding snakeheads (Teleostei, Channidae) revisited: Discovering greater species diversity and resolving perpetuated taxonomic confusions
Cited by: 39
Author(s): Cecilia Conte-Grand, Ralf Britz, Neelesh Dahanukar, Rajeev Raghavan, Rohan Pethiyagoda, Heok Hui Tan, Renny Kurnia Hadiaty, Norsham Yaakob, Lukas Rüber
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-017-08303-4

Structural characterization of CAS SH3 domain selectivity and regulation reveals new CAS interaction partners
Cited by: 12
Author(s): Jakub Gemperle, R. Hexnerova, Martin Lepšı́k, Petr Těšina, Michal Dibus, Marián Novotný, Jan Brábek, Václav Veverka, Daniel Rösel
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0186259

Testing efficacy of distance and tree-based methods for DNA barcoding of grasses (Poaceae tribe Poeae) in Australia
Cited by: 17
Author(s): Joanne L. Birch, N. G. Walsh, David J. Cantrill, Gareth D. Holmes, Daniel J. Murphy
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-018-31382-w

The phylogenetic relationships and species richness of host-specific Dactylogyrus parasites shaped by the biogeography of Balkan cyprinids
Cited by: 25
Author(s): Michal Benovics, Yves Desdevises, Jasna Vukić, Radek Šanda, Andrea Vetešníková Šimková
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-018-34319-5

Integrative taxonomy reveals hidden species within a common fungal parasite of ladybirds
Cited by: 47
Author(s): Danny Haelewaters, André De Kesel, Donald H. Pfister
Software Mentions: 2
Published: about 6 years ago

10.3390/genes10050371

Molecular Data Reveal Multiple Lineages in Piranhas of the Genus Pygocentrus (Teleostei, Characiformes)
Cited by: 10
Author(s): Nadayca Thayane Bonani Mateussi, Bruno Francelino de Melo, Fausto Foresti, Cláudio Oliveira
Software Mentions: 1
Published: over 5 years ago

10.1038/srep14188

High diversity and rapid diversification in the head louse, Pediculus humanus (Pediculidae: Phthiraptera)
Cited by: 39
Author(s): Muhammad Ashfaq, Sean W. J. Prosser, Saima Nasir, Mariyam Masood, Sujeevan Ratnasingham, Paul D. N. Hebert
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-08381-4

Delimiting species of Protaphorura (Collembola: Onychiuridae): integrative evidence based on morphology, DNA sequences and geography
Cited by: 16
Author(s): Xin Sun, Feng Zhang, Yinhuan Ding, Thomas W. Davies, Li Yu, Donghui Wu
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-021-83127-x

An elongated COI fragment to discriminate botryllid species and as an improved ascidian DNA barcode
Cited by: 12
Author(s): Marika Salonna, Fabio Gasparini, Dorothée Huchon, Federica Montesanto, Michal Haddas-Sasson, Merrick Ekins, Marissa McNamara, Francesco Mastrototaro, Carmela Gissi
Software Mentions: 1
Published: almost 4 years ago

10.3390/s18041276

Synchronized High-Speed Vision Sensor Network for Expansion of Field of View
Cited by: 2
Author(s): Akihito Noda, Satoshi Tabata, Masatoshi Ishikawa, Yuji Yamakawa
Software Mentions: 1
Published: over 6 years ago

10.4056/sigs.2625821

Genome sequence and description of Alistipes senegalensis sp. nov.
Cited by: 50
Author(s): Ajay Kumar Mishra, Grégory Gimenez, Jean-Christophe Lagier, Caroline Robert, Didier Raoult, Pierre‐Edouard Fournier
Software Mentions: 1
Published: over 12 years ago

10.4056/sigs.4177252

Non-contiguous finished genome sequence and description of Anaerococcus pacaensis sp. nov., a new species of anaerobic bacterium
Cited by: 9
Author(s): Isabelle Pagnier, Olivier Croce, Caroline Robert, Didier Raoult, Bernard La Scola
Software Mentions: 1
Published: over 11 years ago

10.4056/sigs.5159098

Non-contiguous finished genome sequence and description of Bacteroides neonati sp. nov., a new species of anaerobic bacterium
Cited by: 8
Author(s): Nadim Cassir, Olivier Croce, Isabelle Pagnier, Samia Benamar, Carine Couderc, Caroline Robert, Didier Raoult, Bernard La Scola
Software Mentions: 1
Published: over 10 years ago

10.4056/sigs.5189179

Non-contiguous finished genome sequence and description of Paenibacillus gorillae sp. nov.
Cited by: 7
Author(s): Mamadou Keita, Roshan Padhmananabhan, Aurélia Caputo, Caroline Robert, Eric Delaporte, Didier Raoult, Pierre‐Edouard Fournier, Fadi Bittar
Software Mentions: 1
Published: over 10 years ago

10.1186/s12862-020-01718-0

DNA barcoding reveals cryptic diversity in the underestimated genus Triplophysa (Cypriniformes: Cobitidae, Nemacheilinae) from the northeastern Qinghai-Tibet Plateau
Cited by: 15
Author(s): Tai Wang, Yanping Zhang, Zhuoyu Yang, Zhe Liu, Yanyan Du
Software Mentions: 1
Published: about 4 years ago

10.1186/s12862-017-0972-5

Integrative taxonomy by molecular species delimitation: multi-locus data corroborate a new species of Balkan Drusinae micro-endemics
Cited by: 49
Author(s): Simon Vitecek, Mladen Kučinić, Ana Previšić, Ivana Živić, Katarina Stojanović, Lujza Keresztes, Miklós Bálint, Felicitas Hoppeler, Johann Waringer, Wolfram Graf, Steffen U. Pauls
Software Mentions: 1
Published: over 7 years ago

10.1186/s12862-019-1404-5

Singleton molecular species delimitation based on COI-5P barcode sequences revealed high cryptic/undescribed diversity for Chinese katydids (Orthoptera: Tettigoniidae)
Cited by: 21
Author(s): Zhijun Zhou, Huifang Guo, Han Li, Jinyan Chai, Xuting Che, Fu-Ming Shi
Software Mentions: 1
Published: over 5 years ago

10.1186/s12909-021-02486-1

Testing a new active learning approach to advance motor learning knowledge and self-efficacy in physical therapy undergraduate education
Cited by: 7
Author(s): Daniela Virgínia Vaz, Erica M. R. Ferreira, Giulia B. Palma, Osnat Atun-Einy, Michal Kafri, Fabiane Ribeiro Ferreira
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12918-018-0529-2

Composite mathematical modeling of calcium signaling behind neuronal cell death in Alzheimer’s disease
Cited by: 9
Author(s): Bobby Ranjan, Ket Hing Chong, Jie Zheng
Software Mentions: 1
Published: over 6 years ago

10.1093/bioinformatics/btx025

Multi-rate Poisson tree processes for single-locus species delimitation under maximum likelihood and Markov chain Monte Carlo
Cited by: 468
Author(s): Paschalia Kapli, Sarah Lutteropp, Jiajie Zhang, Kassian Kobert, Pavlos Pavlidis, Alexandros Stamatakis, Tomáš Flouri
Software Mentions: 1
Published: almost 8 years ago

10.3390/ma12223649

Experimental Studies on Interfacial Shear Characteristics between Polypropylene Woven Fabrics
Cited by: 4
Author(s): Fu Yi, Hui Li, Jia Zhang, Xutong Jiang, Maocheng Guan
Software Mentions: 1
Published: about 5 years ago

10.3897/mycokeys.73.47287

The fruticose genera in the Ramalinaceae (Ascomycota, Lecanoromycetes): their diversity and evolutionary history
Cited by: 11
Author(s): Richard W. Spjut, Antoine Simon, Martin Guissard, Nicolas Magain, Emmanuël Sérusiaux
Software Mentions: 1
Published: about 4 years ago

10.3390/pathogens10091167

Cryptic Diversity in Cladosporium cladosporioides Resulting from Sequence-Based Species Delimitation Analyses
Cited by: 4
Author(s): Andrea Becchimanzi, Beata Zimowska, Rosario Nicoletti
Software Mentions: 1
Published: about 3 years ago

10.1371/currents.tol.cdf8b74881f87e3b01d56b43791626d2

DNA Barcoding of Marine Copepods: Assessment of Analytical Approaches to Species Identification
Cited by: 46
Author(s): Leocadio Blanco-Bercial, Astrid Cornils, Nancy J. Copley, Ann Bucklin
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0102160

A Good Compromise: Rapid and Robust Species Proxies for Inventorying Biodiversity Hotspots Using the Terebridae (Gastropoda: Conoidea)
Cited by: 34
Author(s): Maria Vittoria Modica, Nicolas Puillandre, Magalie Castelin, Yu Zhang, Mandë Holford
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0156600

Subspecific Differentiation Events of Montane Stag Beetles (Coleoptera, Lucanidae) Endemic to Formosa Island
Cited by: 9
Author(s): Cheng‐Lung Tsai, Wen‐Bin Yeh
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0216786

Species delimitation of neotropical Characins (Stevardiinae): Implications for taxonomy of complex groups
Cited by: 32
Author(s): Jorge E. García-Melo, Cláudio Oliveira, Guilherme José da Costa Silva, Luz E. Ochoa, Luiz Henrique Garcia Pereira, Javier A. Maldonado-Ocampo
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0102887

Morphological and Genetic Diversity of the Wood-Boring Xylophaga (Mollusca, Bivalvia): New Species and Records from Deep-Sea Iberian Canyons
Cited by: 22
Author(s): Chiara Romano, Janet R. Voight, Rocío Pérez‐Portela, Daniel Martín
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0155541

Evaluating the Utility of Single-Locus DNA Barcoding for the Identification of Ribbon Worms (Phylum Nemertea)
Cited by: 31
Author(s): Per Sundberg, Sebastian Kvist, Malin Strand
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0205203

Evidence supporting cryptic species within two sessile microinvertebrates, Limnias melicerta and L. ceratophylli (Rotifera, Gnesiotrocha)
Cited by: 10
Author(s): Azar Kordbacheh, Robert L. Wallace, Elizabeth J. Walsh
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0214211

Species delimitation in Amblyosyllis (Annelida, Syllidae)
Cited by: 13
Author(s): M. Teresa Aguado, María Capa, Domingo Lago-Barcia, João Gil, Fredrik Pleijel, Arne Nygren
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0161031

Hidden Genetic Diversity in an Asexually Reproducing Lichen Forming Fungal Group
Cited by: 23
Author(s): Ruth Del-Prado, Pradeep K. Divakar, H. Thorsten Lumbsch, Ana Crespo
Software Mentions: 1
Published: over 8 years ago

10.1002/ece3.7855

Species diversity of freshwater shrimp in Henan Province, China, based on morphological characters and COI mitochondrial gene
Cited by: 5
Author(s): Chuanjiang Zhou, Mengxia Feng, Yongtao Tang, Changxing Yang, Xiaolin Meng, Guoxing Nie
Software Mentions: 1
Published: over 3 years ago

10.1002/ece3.5605

Development of high‐resolution DNA barcodes for Dioscorea species discrimination and phylogenetic analysis
Cited by: 13
Author(s): Wei Xia, Bo Zhang, Dan Xing, Ying Liu, Wen-Qiang Wu, Yong Xiao, Jun Sun, Yajing Dou, Wenqi Tang, Jinlan Zhang, Xiaolong Huang, Yun Xu, Jun Xie, Jihua Wang, Dong Huang
Software Mentions: 1
Published: over 5 years ago

10.1002/ece3.4933

Mitochondrial divergence suggests unexpected high species diversity in the opsariichthine fishes (Teleostei: Cyprinidae) and the revalidation of Opsariichthys macrolepis
Cited by: 7
Author(s): Xue Wang, Fei Liu, Dan Yu, Huanzhang Liu
Software Mentions: 1
Published: almost 6 years ago

10.1002/ece3.7836

Excluding spatial sampling bias does not eliminate oversplitting in DNA‐based species delimitation analyses
Cited by: 4
Author(s): Daniel Lukic, Jonas Eberle, Jana Thormann, Carolus Holzschuh, Dirk Ahrens
Software Mentions: 1
Published: over 3 years ago

10.3389/fgene.2019.00011

Cryptic Diversity, but to What Extent? Discordance Between Single-Locus Species Delimitation Methods Within Mainland Anoles (Squamata: Dactyloidae) of Northern Central America
Cited by: 31
Author(s): Erich Hofmann, Kirsten E Nicholson, Ileana R. Luque-Montes, Günther Köhler, César A. Cerrato-Mendoza, Melissa Medina-Flores, Larry David Wilson, Josiah H. Townsend
Software Mentions: 1
Published: almost 6 years ago

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