Ecosyste.ms: Papers

10.1186/s12870-014-0315-2

The chickpea genomic web resource: visualization and analysis of the desi-type Cicer arietinum nuclear genome for comparative exploration of legumes
Cited by: 8
Author(s): Gopal Misra, Piyush Priya, Nitesh Bandhiwal, Neha Bareja, Mukesh Jain, Sabhyata Bhatia, Debasis Chattopadhyay, Akhilesh K. Tyagi, Gitanjali Yadav
Software Mentions: 6
Published: almost 10 years ago

10.3390/ijms21197288

Pathway Analysis of Selected Circulating miRNAs in Plasma of Breast Cancer Patients: A Preliminary Study
Cited by: 13
Author(s): Veronika Holubeková, Zuzana Kolková, Marián Grendár, Dušan Braný, Dana Dvorská, Igor Stastny, Marianna Jagelková, Katarína Zelinová, Marek Samec, Alena Líšková, Zuzana Laučeková, Erik Kúdela, Martina Bobrovská, Michal Kalman, Pavol Žúbor, Zuzana Daňková
Software Mentions: 5
Published: about 4 years ago

10.1186/s12859-018-2149-7

Ensemble outlier detection and gene selection in triple-negative breast cancer data
Cited by: 25
Author(s): Marta B. Lopes, André Veríssimo, Eunice Carrasquinha, Sandra Casimiro, Niko Beerenwinkel, Susana Vinga
Software Mentions: 5
Published: over 6 years ago

10.1186/s12864-017-4362-6

Comparative ribosome profiling uncovers a dominant role for translational control in Toxoplasma gondii
Cited by: 20
Author(s): Musa A. Hassan, Juan J. Vasquez, Guo-Liang Chew, Markus Meissner, T. Nicolai Siegel
Software Mentions: 4
Published: almost 7 years ago

10.1002/lrh2.10233

Toward <scp>cross‐platform</scp> electronic health record<scp>‐driven</scp> phenotyping using Clinical Quality Language
Cited by: 12
Author(s): Pascal Brandt, Richard C. Kiefer, Jennifer A. Pacheco, Prakash Adekkanattu, Evan Sholle, Faraz Ahmad, Jie Xu, Zhenxing Xu, Jessica S. Ancker, Fei Wang, Yuan Luo, Guoqian Jiang, Jyotishman Pathak, Luke V. Rasmussen
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0092996

Modular Hyperthermostable Bacterial Endo-β-1,4-Mannanase: Molecular Shape, Flexibility and Temperature-Dependent Conformational Changes
Cited by: 11
Author(s): Viviam M. da Silva, Francieli Colussi, Mário de Oliveira Neto, Antônio Sérgio Kimus Braz, Fábio M. Squina, Cristiano L. P. Oliveira, Wânius Garcia
Software Mentions: 2
Published: over 10 years ago

10.3389/fimmu.2018.02294

Reference Grade Characterization of Polymorphisms in Full-Length HLA Class I and II Genes With Short-Read Sequencing on the ION PGM System and Long-Reads Generated by Single Molecule, Real-Time Sequencing on the PacBio Platform
Cited by: 29
Author(s): Shingo Suzuki, Swati Ranade, Ken Osaki, Sayaka Ito, Atsuko Shigenari, Yuko Ohnuki, Akira Oka, Anri Masuya, John Harting, Primo Baybayan, Miwako Kitazume, Junichi Sunaga, Satoko Morishima, Yasuo Morishima, Hidetoshi Inoko, Jerzy K. Kulski, Takashi Shiina
Software Mentions: 2
Published: about 6 years ago

10.3390/molecules25030746

A Novel Dimeric Exoglucanase (GH5_38): Biochemical and Structural Characterisation towards its Application in Alkyl Cellobioside Synthesis
Cited by: 5
Author(s): Mpho S. Mafa, Heinrich Wilfred Dirr, Samkelo Malgas, Rui W. M. Krause, Konanani Rashamuse, Brett I. Pletschke
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12911-017-0501-x

Utilizing patient data from the veterans administration electronic health record to support web-based clinical decision support: informatics challenges and issues from three clinical domains
Cited by: 14
Author(s): Nallakkandi Rajeevan, Kristina M. Niehoff, Peter Charpentier, Forrest L. Levin, Amy C. Justice, Cynthia Brandt, Terri R. Fried, Perry L. Miller
Software Mentions: 2
Published: over 7 years ago

10.1186/1472-6947-12-6

Recommended practices for computerized clinical decision support and knowledge management in community settings: a qualitative study
Cited by: 81
Author(s): Joan S. Ash, Dean F. Sittig, Kenneth P. Guappone, Richard H. Dykstra, Joshua E. Richardson, Adam Wright, James Carpenter, Carmit K. McMullen, Michael D. Shapiro, Arwen Bunce, Blackford Middleton
Software Mentions: 2
Published: almost 13 years ago

10.1186/s43058-020-00057-x

Multi-factorial barriers and facilitators to high adherence to lung-protective ventilation using a computerized protocol: a mixed methods study
Cited by: 8
Author(s): Andrew J. Knighton, Jacob Kean, Doug Wolfe, Lauren Allen, Jason R. Jacobs, Lori Carpenter, Carrie Winberg, Jay G. Berry, Ithan D. Peltan, Colin K. Grissom, Rajendu Srivastava
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pcbi.1003757

Analysis of Stop-Gain and Frameshift Variants in Human Innate Immunity Genes
Cited by: 31
Author(s): Antonio Rausell, Pejman Mohammadi, Paul J. McLaren, István Bartha, Ioannis Xénarios, Jacques Fellay, Amalio Telenti
Software Mentions: 2
Published: over 10 years ago

10.1186/1471-2105-9-381

MetWAMer: eukaryotic translation initiation site prediction
Cited by: 14
Author(s): Michael E. Sparks, Volker Brendel
Software Mentions: 2
Published: about 16 years ago

10.1371/journal.pone.0213373

Clinical decision support for high-cost imaging: A randomized clinical trial
Cited by: 33
Author(s): Jon Doyle, Sarah Abraham, Laura Feeney, Sarah Reimer, Amy Finkelstein
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0104798

How Do Astronomers Share Data? Reliability and Persistence of Datasets Linked in AAS Publications and a Qualitative Study of Data Practices among US Astronomers
Cited by: 49
Author(s): Alberto Pepe, Alyssa A. Goodman, August Muench, Mercè Crosas, Christopher Erdmann
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0195969

Identification of RNA-binding proteins in exosomes capable of interacting with different types of RNA: RBP-facilitated transport of RNAs into exosomes
Cited by: 158
Author(s): Luisa Statello, Marco Maugeri, Elena Garré, Muhammad Nawaz, Jessica Wahlgren, Alexandros Papadimitriou, Christina Lundqvist, Lennart Lindfors, Anna Collén, Per Sunnerhagen, Marco Ragusa, Michele Purrello, Cinzia Di Pietro, Natalie J. Tigue, Hadi Valadi
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0164067

Revisiting the Phylogeny of the Animal Formins: Two New Subtypes, Relationships with Multiple Wing Hairs Proteins, and a Lost Human Formin
Cited by: 33
Author(s): David Pruyne
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0136486

Castanea sativa (European Chestnut) Leaf Extracts Rich in Ursene and Oleanene Derivatives Block Staphylococcus aureus Virulence and Pathogenesis without Detectable Resistance
Cited by: 87
Author(s): Cassandra L. Quave, James T. Lyles, Jeffery S. Kavanaugh, Kimberly M. Nelson, Corey P. Parlet, Heidi A. Crosby, Kristopher P. Heilmann, Alexander R. Horswill
Software Mentions: 1
Published: over 9 years ago

10.3390/cells8111362

Phosphorylation of TIP3 Aquaporins during Phaseolus vulgaris Embryo Development
Cited by: 2
Author(s): Mark Daniels, Mark Yeager
Software Mentions: 1
Published: about 5 years ago

10.3390/children8040283

Examination of the SUPPS-P Impulsive Behavior Scale among Male and Female Youth: Psychometrics and Invariance
Cited by: 4
Author(s): Pedro Pechorro, Rebecca Revilla, Victor Hugo Palma, Cristina Nunes, Cátia Martins, Melissa A. Cyders
Software Mentions: 1
Published: over 3 years ago

10.1093/database/bay095

PalmXplore: oil palm gene database
Cited by: 15
Author(s): Nik Shazana Nik Mohd Sanusi, Rozana Rosli, Mohd Amin Ab Halim, Kuang‐Lim Chan, Jayanthi Nagappan, Norazah Azizi, Nadzirah Amiruddin, Tatiana V. Tatarinova, Eng‐Ti Leslie Low
Software Mentions: 1
Published: almost 7 years ago

10.5334/egems.259

The Imperative for Patient-Centered Clinical Decision Support
Cited by: 16
Author(s): Laura Haak Marcial, Joshua E. Richardson, Beth Lasater, Blackford Middleton, Jerome A. Osheroff, Kensaku Kawamoto, Jessica S. Ancker, Danny Van Leeuwen, Edwin A. Lomotan, Shafa Al-Showk, Barry H. Blumenfeld
Software Mentions: 1
Published: over 6 years ago

10.12688/f1000research.20498.2

Evidence-based Clinical Decision Support Systems for the prediction and detection of three disease states in critical care: A systematic literature review
Cited by: 18
Author(s): Goran Medic, Melodi Koşaner Kließ, Louis Atallah, J Weichert, Saswat Panda, Maarten Postma, Amer EL-Kerdi
Software Mentions: 1
Published: almost 5 years ago

10.1002/2211-5463.12238

MicroRNA profiling in gingival crevicular fluid of periodontitis—a pilot study
Cited by: 37
Author(s): Akira Saito, Masafumi Horie, Kenichiro Ejiri, Akira Aoki, Seiji Katagiri, Shogo Maekawa, Shinta Suzuki, Sophannary Kong, Tsuneto Yamauchi, Yoko Yamaguchi, Yuichi Izumi, Mitsuhiro Ohshima
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2018.03035

Organic Residue Amendments to Modulate Greenhouse Gas Emissions From Agricultural Soils
Cited by: 37
Author(s): Kristof Brenzinger, Sytske M. Drost, G.W. Korthals, Paul L. E. Bodelier
Software Mentions: 1
Published: almost 6 years ago

10.3389/fped.2021.624639

Model-Informed Precision Dosing of Antibiotics in Pediatric Patients: A Narrative Review
Cited by: 25
Author(s): Alan Abdulla, Angela Elma Edwina, Robert B. Flint, Karel Allegaert, Enno D. Wildschut, Birgit C. P. Koch, Matthijs de Hoog
Software Mentions: 1
Published: over 3 years ago

10.3389/fped.2021.634739

Predicting Therapeutic Response in Pediatric Ulcerative Colitis—A Journey Towards Precision Medicine
Cited by: 5
Author(s): Ruben J. Colman, Jasbir Dhaliwal, Michael J. Rosen
Software Mentions: 1
Published: almost 4 years ago

10.3389/fphar.2020.00551

Model-Informed Precision Dosing of Vancomycin in Hospitalized Children: Implementation and Adoption at an Academic Children’s Hospital
Cited by: 35
Author(s): Adam Frymoyer, Hayden T Schwenk, Yvonne Zorn, Laura L. Bio, Jeffrey D. Moss, Bhavin Chasmawala, Joshua Faulkenberry, Srijib Goswami, Ron J. Keizer, Shabnam Ghaskari
Software Mentions: 1
Published: over 4 years ago

10.3389/fpls.2019.01731

Eriobotrya Belongs to Rhaphiolepis (Maleae, Rosaceae): Evidence From Chloroplast Genome and Nuclear Ribosomal DNA Data
Cited by: 39
Author(s): Binbin Liu, Guang‐Ning Liu, Hong De‐Yuan, Jun Wen
Software Mentions: 1
Published: almost 5 years ago

10.3389/fpubh.2019.00123

Clinical Utility of the DriveFocus™ Intervention on Young Drivers With and Without Experience
Cited by: 1
Author(s): Liliana Alvarez, Sherrilene Classen, Shabnam Medhizadah
Software Mentions: 1
Published: over 5 years ago

10.1155/2020/8265054

Assessing the Oxidative Degradation of N-Methylpyrrolidone (NMP) in Microelectronic Fabrication Processes by Using a Multiplatform Analytical Approach
Cited by: 5
Author(s): Gavin Lennon, S. Willox, Ragini Ramdas, Scott J. Funston, Matthew Klun, Robert Pieh, Stewart Fairlie, Sara Dobbin, Diego Cobice
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-019-45225-9

Modified expression of ZmMYB167 in Brachypodium distachyon and Zea mays leads to increased cell wall lignin and phenolic content
Cited by: 15
Author(s): Rakesh Bhatia, Susan Dalton, Luned Roberts, Odin Manuel Moron-Garcia, Rosario Iacono, Ondřej Kosík, Joe Gallagher, Marina Bosch
Software Mentions: 1
Published: over 5 years ago

10.3390/s19040832

A Cognitive-Inspired Event-Based Control for Power-Aware Human Mobility Analysis in IoT Devices
Cited by: 10
Author(s): Rafael Pérez-Torres, César Torres-Huitzil, Hiram Galeana-Zapién
Software Mentions: 1
Published: almost 6 years ago

10.3390/s19092175

Brain Inspired Dynamic System for the Quality of Service Control over the Long-Haul Nonlinear Fiber-Optic Link
Cited by: 9
Author(s): Mahdi Naghshvarianjahromi, Shiva Kumar, M. Jamal Deen
Software Mentions: 1
Published: over 5 years ago

10.3390/s21010069

A Three-Stage Inter-Channel Calibration Approach for Passive Radar on Moving Platforms Exploiting the Minimum Variance Power Spectrum
Cited by: 3
Author(s): Philipp Wojaczek, Diego Cristallini, Daniel O’Hagan, Fabiola Colone, Giovanni Paolo Blasone, P. Lombardo
Software Mentions: 1
Published: almost 4 years ago

10.1186/s41606-019-0038-2

Quality improvement and practice-based research in sleep medicine using structured clinical documentation in the electronic medical record
Cited by: 2
Author(s): Demetrius M. Maraganore, Thomas Freedom, Kelly Claire Simon, Lori E. Lovitz, Camelia Musleh, Richard Munson, Nabeela Nasir, Smita S. Patel, Joya Paul, Mari Viola-Saltzman, Steven Meyers, Richard Chesis, Laura Hillman, Samuel Tideman, Anna Pham, Rosa Maria Vazquez, Roberta Frigerio
Software Mentions: 1
Published: almost 5 years ago

10.3390/toxins11010043

The Individual and Combined Effects of the Cyanotoxins, Anatoxin-a and Microcystin-LR, on the Growth, Toxin Production, and Nitrogen Fixation of Prokaryotic and Eukaryotic Algae
Cited by: 27
Author(s): Mathias Ahii Chia, Benjamin J. Kramer, Jennifer G. Jankowiak, Maria do Carmo Bittencourt‐Oliveira, Christopher J. Gobler
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13063-021-05488-y

Lessons learned from Integrated Management Program Advancing Community Treatment of Atrial Fibrillation (IMPACT-AF): a pragmatic clinical trial of computerized decision support in primary care
Cited by: 2
Author(s): Joanna Nemis-White, Laura Hamilton, Sarah Shaw, James MacKillop, Ratika Parkash, Shurjeel Choudhri, Antonio Ciaccia, Feng Xie, Lehana Thabane, Jafna L. Cox, Impact‐Af Investigators
Software Mentions: 1
Published: over 3 years ago

10.3892/ijo.2012.1669

Function and cancer genomics of FAT family genes
Cited by: 163
Author(s): Masaru Katoh
Software Mentions: 1
Published: about 12 years ago

10.2196/humanfactors.5440

Usability Testing and Adaptation of the Pediatric Cardiovascular Risk Reduction Clinical Decision Support Tool
Cited by: 10
Author(s): Pam Williams, Robert Furberg, Jacqueline Bagwell, Kenneth A. LaBresh
Software Mentions: 1
Published: over 8 years ago

10.2196/24359

Applying Clinical Decision Support Design Best Practices With the Practical Robust Implementation and Sustainability Model Versus Reliance on Commercially Available Clinical Decision Support Tools: Randomized Controlled Trial
Cited by: 10
Author(s): Katy E. Trinkley, Miranda Kroehl, Michael G. Kahn, Larry A. Allen, Tellen D. Bennett, Gary Hale, Heather Haugen, Simeon Heckman, David P. Kao, Janet Kim, Daniel D. Matlock, Daniel C. Malone, Robert L. Page, Jessica M. Stine, Krithika Suresh, Lauren Wells, Chen-Tan Lin
Software Mentions: 1
Published: over 3 years ago

10.2196/mhealth.6291

A Mobile Clinical Decision Support Tool for Pediatric Cardiovascular Risk-Reduction Clinical Practice Guidelines: Development and Description
Cited by: 8
Author(s): Robert Furberg, Pam Williams, Jacqueline Bagwell, Kenneth A. LaBresh
Software Mentions: 1
Published: over 7 years ago

10.2196/24342

De-Implementing Opioid Use and Implementing Optimal Pain Management Following Dental Extractions (DIODE): Protocol for a Cluster Randomized Trial
Cited by: 9
Author(s): D. Brad Rindal, Stephen E. Asche, Jan Gryczynski, Sheryl Kane, Anjali R. Truitt, Tracy L Shea, Jeanette Y. Ziegenfuss, Robert P. Schwartz, Donald C. Worley, Shannon Gwin Mitchell
Software Mentions: 1
Published: over 3 years ago

10.25122/jml-2020-0182

Development of a Knowledge-based Clinical Decision Support System for Multiple Sclerosis Diagnosis
Cited by: 9
Author(s): Azamossadat Hosseini, Farkhondeh Asadi, Leila Akramian Arani
Software Mentions: 1
Published: about 4 years ago

10.2196/15385

Reducing Potentially Inappropriate Prescriptions for Older Patients Using Computerized Decision Support Tools: Systematic Review
Cited by: 52
Author(s): Luís Monteiro, Tiago Maricoto, Isabel Solha, Inês Ribeiro-Vaz, Carlos Martins, Matilde Monteiro‐Soares
Software Mentions: 1
Published: about 5 years ago

10.18632/oncotarget.23325

Non coding RNA analysis in fibrolamellar hepatocellular carcinoma
Cited by: 22
Author(s): Farber Ba, Gadi Lalazar, Simon Ep, William J. Hammond, David Requena, Umesh Bhanot, La Quaglia, Sanford M. Simon
Software Mentions: 1
Published: almost 7 years ago

10.3390/jpm10040293

Practical Barriers and Facilitators Experienced by Patients, Pharmacists and Physicians to the Implementation of Pharmacogenomic Screening in Dutch Outpatient Hospital Care—An Explorative Pilot Study
Cited by: 12
Author(s): Pauline Lanting, Evelien Drenth, Ludolf G. Boven, A. van der Hoek, Annemiek Hijlkema, Ellen Poot, Gerben van der Vries, Robert A. Schoevers, Ernst Horwitz, Rijk O. B. Gans, Jos G. W. Kosterink, Mirjam Plantinga, Irene M. van Langen, Adelita V. Ranchor, Cisca Wijmenga, Lude Franke, Bob Wilffert, Rolf H. Sijmons
Software Mentions: 1
Published: almost 4 years ago

10.1186/1471-2105-8-318

AUG_hairpin: prediction of a downstream secondary structure influencing the recognition of a translation start site
Cited by: 49
Author(s): А. В. Кочетов, Andrey Palyanov, И. И. Титов, D. A. Grigorovich, Akinori Sarai, Н. А. Колчанов
Software Mentions: 1
Published: about 17 years ago

10.3390/jpm11070596

Genomics as a Clinical Decision Support Tool: Successful Proof of Concept for Improved ASD Outcomes
Cited by: 5
Author(s): Heather Way, Grant E Williams, Sharon Hausman-Cohen, Jordan Reeder
Software Mentions: 1
Published: over 3 years ago

10.1186/s13628-014-0011-5

Simulation tools for particle-based reaction-diffusion dynamics in continuous space
Cited by: 73
Author(s): Johannes Schöneberg, Alexander Ullrich, Frank Noé
Software Mentions: 1
Published: about 10 years ago

10.1186/s12911-015-0148-4

Engineering a mobile health tool for resource-poor settings to assess and manage cardiovascular disease risk: SMARThealth study
Cited by: 53
Author(s): Arvind Raghu, Devarsetty Praveen, David Peiris, Lionel Tarassenko, Gari D. Clifford
Software Mentions: 1
Published: over 9 years ago

10.1186/1472-6947-9-44

Information management to enable personalized medicine: stakeholder roles in building clinical decision support
Cited by: 58
Author(s): Gregory J. Downing, Scott N Boyle, Kristin M. Brinner, Jerome A. Osheroff
Software Mentions: 1
Published: about 15 years ago

10.1186/1471-2180-14-18

Hydrophobins are required for conidial hydrophobicity and plant root colonization in the fungal biocontrol agent Clonostachys rosea
Cited by: 54
Author(s): Mukesh Dubey, Dan Funck Jensen, Magnus Karlsson
Software Mentions: 1
Published: almost 11 years ago

10.1186/s42234-021-00066-8

How artificial intelligence can help us ‘Choose Wisely’
Cited by: 2
Author(s): Nishila Mehta, Karen Born, Benjamin Fine
Software Mentions: 1
Published: over 3 years ago

10.1016/j.biortech.2019.122285

Pilot-scale production of xylo-oligosaccharides and fermentable sugars from Miscanthus using steam explosion pretreatment
Cited by: 57
Author(s): Rakesh Bhatia, Ana L. Winters, David Bryant, Marina Bosch, John Clifton‐Brown, David J. Leak, Joe Gallagher
Software Mentions: 1
Published: almost 5 years ago

10.3390/molecules25215126

Chemometric Screening of Fourteen Essential Oils for Their Composition and Biological Properties
Cited by: 11
Author(s): Filomena Monica Vella, Roberto Calandrelli, Domenico Cautela, Immacolata Fiume, Gabriella Pocsfalvi, Bruna Laratta
Software Mentions: 1
Published: about 4 years ago

10.3390/molecules26123480

In Vitro Bioaccessibility of Bioactive Compounds from Citrus Pomaces and Orange Pomace Biscuits
Cited by: 12
Author(s): Adriana Maite Fernández-Fernández, Eduardo Dellacassa, T. Nardin, R. Larcher, Adriana Gámbaro, Alejandra Medrano-Fernández, María Dolores del Castillo
Software Mentions: 1
Published: over 3 years ago

10.1080/03009734.2018.1439551

MicroRNA meta-signature of oral cancer: evidence from a meta-analysis
Cited by: 43
Author(s): Katarina Zeljić, Ivan Jovanović, Jovica Jovanović, Zvonko Magić, Aleksandra Stanković, Gordana Šupić
Software Mentions: 1
Published: almost 7 years ago

10.1097/pq9.0000000000000248

Implementation of Targeted Point of Care HIV Testing in a Pediatric Emergency Department
Cited by: 7
Author(s): Seema Bhatt, Michelle Eckerle, Jennifer L. Reed, Venita Robinson, Angela Brown, Joyce E. Lippe, Carolyn K. Holland, Srikant Iyer
Software Mentions: 1
Published: almost 5 years ago

10.3390/pharmaceutics12030282

Topical Delivery of Meloxicam using Liposome and Microemulsion Formulation Approaches
Cited by: 27
Author(s): Julia Zhang, Anna Froelich, Bożena Michniak-Kohn
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0163655

Correction: Castanea sativa (European Chestnut) Leaf Extracts Rich in Ursene and Oleanene Derivatives Block Staphylococcus aureus Virulence and Pathogenesis without Detectable Resistance
Cited by: 6
Author(s): C. L. Quave, J. T. Lyles, J. S. Kavanaugh, K. Nelson, C. P. Parlet, Heidi A. Crosby, K. P. Heilmann, A. R. Horswill
Software Mentions: 1
Published: about 8 years ago