Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: the
https://packages.ecosyste.ms/registries/pypi.org/packages/the
rspec/should.js assertion style for python test
3 versions
Latest release: about 11 years ago
1,018 downloads last month
Papers Mentioning the 55
10.1002/1878-0261.12381
A pan‐cancer atlas of cancer hallmark‐associated candidate driver lnc <scp>RNA</scp> sCited by: 19
Author(s): Yulan Deng, Shangyi Luo, Xinxin Zhang, Chaoxia Zou, Huating Yuan, Gaoming Liao, Liwen Xu, Chunyu Deng, Yujia Lan, Tingting Zhao, Xu Gao, Yun Xiao, Xia Li
Software Mentions: 8
Published: about 6 years ago
10.1186/s12879-015-0786-2
Identification of circulating biomarkers in sera of Plasmodium knowlesi-infected malaria patients – comparison against Plasmodium vivax infectionCited by: 15
Author(s): Yeng Chen, Choon Kit Chan, Jesinda P Kerishnan, Yee Ling Lau, Yin-Ling Irene Wong, Subash C. B. Gopinath
Software Mentions: 6
Published: almost 10 years ago
10.1371/journal.pone.0109012
Identification of Host-Immune Response Protein Candidates in the Sera of Human Oral Squamous Cell Carcinoma PatientsCited by: 32
Author(s): Yeng Chen, Siti Nuraishah Azman, Jesinda P Kerishnan, Rosnah Binti Zain, Yu Nieng Chen, Yin-Ling Irene Wong, Subash C. B. Gopinath
Software Mentions: 5
Published: over 10 years ago
10.1371/journal.pone.0189159
Transcriptomic profiles in peripheral blood between women with unexplained recurrent implantation failure and recurrent miscarriage and the correlation with endometrium: A pilot studyCited by: 11
Author(s): Jin Huang, Nana Jin, Hao Qin, Xiao Shi, Yingyu Liu, Wing-Ching Cheung, Chi Chiu Wang, Ting‐Fung Chan, Tin‐Chiu Li
Software Mentions: 5
Published: about 7 years ago
10.1038/s41419-019-1821-9
C-Jun drives melanoma progression in PTEN wild type melanoma cellsCited by: 21
Author(s): Melanie Kappelmann‐Fenzl, Claudia Gebhard, Alexander Matthies, Silke Kuphal, Michael Rehli, Anja Boßerhoff
Software Mentions: 5
Published: over 5 years ago
10.1371/journal.pone.0078546
Whole-Genome Pathway Analysis on 132,497 Individuals Identifies Novel Gene-Sets Associated with Body Mass IndexCited by: 4
Author(s): Matthew A. Simonson, Matthew B. McQueen, Matthew C. Keller
Software Mentions: 4
Published: almost 11 years ago
10.1186/s12348-018-0156-5
Discovery of tear biomarkers in children with chronic non-infectious anterior uveitis: a pilot studyCited by: 30
Author(s): Sheila T. Angeles‐Han, Steven Yeh, Purnima Patel, Duc M. Duong, Kirsten Jenkins, Kelly Rouster‐Stevens, Mekibib Altaye, Ndate Fall, Sherry Thornton, Sampath Prahalad, Gary N. Holland
Software Mentions: 4
Published: about 6 years ago
10.1371/journal.pone.0244966
Clinical and pharmacokinetic/dynamic outcomes of prolonged infusions of beta-lactam antimicrobials: An overview of systematic reviewsCited by: 18
Author(s): Pierre Thabet, Anchal Joshi, Erika MacDonald, Brian Hutton, Wei Cheng, Adrienne Stevens, Salmaan Kanji
Software Mentions: 4
Published: almost 4 years ago
10.3389/fnhum.2020.00346
Brain Network Modularity Predicts Improvements in Cognitive and Scholastic Performance in Children Involved in a Physical Activity InterventionCited by: 18
Author(s): Laura Chaddock-Heyman, Timothy B. Weng, Caitlin Kienzler, Robert Weisshappel, Eric S. Drollette, Lauren B. Raine, Daniel R. Westfall, Shih‐Chun Kao, Pauline L. Baniqued, Darla M. Castelli, Charles H. Hillman, Arthur F. Kramer
Software Mentions: 4
Published: over 4 years ago
10.3389/fcell.2020.00380
Paternal Resistance Training Modulates Calcaneal Tendon Proteome in the Offspring Exposed to High-Fat DietCited by: 8
Author(s): Ivo Vieira de Sousa Neto, Ramires Alsamir Tibana, Leonardo Gomes de Oliveira da Silva, Eliene Martins de Lira, Gleyce Pires Gonçalves do Prado, Jeeser Alves de Almeida, Octávio Luiz Franco, João Luíz Quagliotti Durigan, Adetola B Adesida, Marcelo Valle de Sousa, Carlos André Ornelas Ricart, Hylane Luiz Damascena, Mariana S. Castro, Wagner Fontes, Jonato Prestes, Rita de Cássia Marqueti
Software Mentions: 4
Published: over 4 years ago
10.1155/2020/5603580
Paternal Resistance Training Induced Modifications in the Left Ventricle Proteome Independent of Offspring DietCited by: 4
Author(s): Ivo Vieira de Sousa Neto, Ramires Alsamir Tibana, Jonato Prestes, Leonardo Gomes de Oliveira da Silva, Jeeser Alves de Almeida, Octávio L. Franco, Edilamar Menezes de Oliveira, Fabrício Azevedo Voltarelli, João Luíz Quagliotti Durigan, Marcelo Valle de Sousa, Carlos André Ornelas Ricart, Katyelle Botelho, Mariana S. Castro, Wagner Fontes, Rita de Cássia Marqueti
Software Mentions: 4
Published: over 4 years ago
10.1371/journal.pone.0094328
Network Analysis of Inflammatory Genes and Their Transcriptional Regulators in Coronary Artery DiseaseCited by: 54
Author(s): Jiny Nair, Madankumar Ghatge, Vijay V. Kakkar, Jayashree Shanker
Software Mentions: 4
Published: over 10 years ago
10.1371/journal.pone.0093814
The ‘Swallow Tail’ Appearance of the Healthy Nigrosome – A New Accurate Test of Parkinson's Disease: A Case-Control and Retrospective Cross-Sectional MRI Study at 3TCited by: 232
Author(s): Štefan Schwarz, Mohammed Afzal, Paul S. Morgan, Nin Bajaj, Penny A. Gowland, Dorothee P. Auer
Software Mentions: 3
Published: over 10 years ago
10.1186/1471-2164-15-814
High dose ionizing radiation regulates micro RNA and gene expression changes in human peripheral blood mononuclear cellsCited by: 40
Author(s): Lucian Beer, Rudolf Seemann, Robin Ristl, Adolf Ellinger, Mohammad Mahdi Kasiri, Andreas Mitterbauer, Matthias Zimmermann, Christian Gabriel, Mariann Gyöngyösi, Walter Klepetko, Michael Mildner, Hendrik Jan Ankersmit
Software Mentions: 3
Published: over 10 years ago
10.1186/1471-2350-15-85
Genetic similarities between tobacco use disorder and related comorbidities: an exploratory studyCited by: 3
Author(s): Sylviane de Viron, Servaas A. Morré, Herman Van Oyen, Angela Brand, Sander Ouburg
Software Mentions: 3
Published: over 10 years ago
10.1371/journal.pone.0106151
An siRNA Screen of Membrane Trafficking Genes Highlights Pathways Common to HIV-1 and M-PMV Virus Assembly and ReleaseCited by: 10
Author(s): Xin Wen, Ling Ding, Eric Hunter, Paul Spearman
Software Mentions: 3
Published: over 10 years ago
10.1371/journal.pone.0199093
Spatial distribution patterns of soil mite communities and their relationships with edaphic factors in a 30-year tillage cornfield in northeast ChinaCited by: 5
Author(s): Jie Liu, Meixiang Gao, Yuxi Guo, Dong Liu, Xinyu Zhu, Donghui Wu
Software Mentions: 3
Published: over 6 years ago
10.1186/s12998-021-00374-5
Chiropractic case reports: a review and bibliometric analysisCited by: 19
Author(s): Robert J. Trager, Jeffery A. Dusek
Software Mentions: 3
Published: over 3 years ago
10.1093/database/bau112
HGV&TB: a comprehensive online resource on human genes and genetic variants associated with tuberculosisCited by: 3
Author(s): Ruchika Sahajpal, Gaurav Kandoi, Heena Dhiman, Sweety Raj, Vinod Scaria, Deeksha Bhartiya, Yasha Hasija
Software Mentions: 3
Published: about 10 years ago
10.1155/2018/2178610
A Network Pharmacology Approach to Uncover the Potential Mechanism of Yinchensini DecoctionCited by: 32
Author(s): Guo-Ming Chen, Chuyao Huang, Yunyun Liu, Tengyu Chen, Ru Huang, Miaozhen Liang, Jie Zhang, Haowen Xu
Software Mentions: 3
Published: about 6 years ago
10.3389/fchem.2018.00177
Structural, Functional, and Evolutionary Characterization of Major Drought Transcription Factors Families in MaizeCited by: 22
Author(s): Shikha Mittal, Banduni Pooja, Mallana Gowdra Mallikarjuna, Atmakuri Ramakrishna Rao, Prashant Ankur Jain, Prasanta K. Dash, Nepolean Thirunavukkarasu
Software Mentions: 3
Published: over 6 years ago
10.3389/fendo.2021.658304
Type 2 Diabetes Coagulopathy Proteins May Conflict With Biomarkers Reflective of COVID-19 SeverityCited by: 4
Author(s): Abu Saleh Md Moin, Ahmed Al‐Qaissi, Thozhukat Sathyapalan, Stephen L. Atkin, Alexandra E. Butler
Software Mentions: 3
Published: over 3 years ago
10.3389/fmed.2019.00322
Rare Co-occurrence of Beta-Thalassemia and Pseudoxanthoma elasticum: Novel Biomolecular FindingsCited by: 18
Author(s): Federica Boraldi, Francesco Demetrio Lofaro, Sónia Costa, Pasquale Moscarelli, Daniela Quaglino
Software Mentions: 3
Published: almost 5 years ago
10.3389/fneur.2017.00246
Autonomic Function Impairment and Brain Perfusion Deficit in Parkinson’s DiseaseCited by: 18
Author(s): Wei Che Lin, Pei Chin Chen, Chih Cheng Huang, Nai‐Wen Tsai, Hsiu-Ling Chen, Hung-Chen Wang, Kun Hsien Chou, Meng Hsiang Chen, Yi Wen Chen, Cheng Hsien Lu
Software Mentions: 3
Published: over 7 years ago
10.3389/fneur.2018.00025
Altered Brain Functional Connectome in Migraine with and without Restless Legs Syndrome: A Resting-State Functional MRI StudyCited by: 25
Author(s): Fu‐Chi Yang, Kun Hsien Chou, Ai Ling Hsu, Jong Ling Fuh, Jiing Feng Lirng, Hung Wen Kao, Ching Po Lin, Shuu Jiun Wang
Software Mentions: 3
Published: almost 7 years ago
10.3389/fpsyg.2021.727961
Structure of Relationships Between the University Organizational Image and Student LoyaltyCited by: 0
Author(s): José Álvarez‐García, María de la Cruz del Río‐Rama, Cristiana Oliveira, Amador Durán‐Sánchez
Software Mentions: 3
Published: over 3 years ago
10.3389/fvets.2020.00308
Differential Proteomic Expression of Equine Cardiac and Lamellar Tissue During Insulin-Induced LaminitisCited by: 4
Author(s): Allison Campolo, Matthew W. Frantz, Melody A. de Laat, Steven D. Hartson, Martin Furr, Véronique A. Lacombe
Software Mentions: 3
Published: over 4 years ago
10.1111/jcmm.15170
Tissue‐selective regulation of protein homeostasis and unfolded protein response signalling in sporadic ALSCited by: 10
Author(s): Luigi Montibeller, Li Yi Tan, Joo Kyung Kim, Praveen Paul, Jacqueline de Belleroche
Software Mentions: 3
Published: over 4 years ago
10.1038/srep16662
Analysis of the Secretome of Apoptotic Peripheral Blood Mononuclear Cells: Impact of Released Proteins and Exosomes for Tissue RegenerationCited by: 95
Author(s): Lucian Beer, Matthias Zimmermann, Andreas Mitterbauer, Adolf Ellinger, Флориан Грубер, Marie-Sophie Narzt, Maria Zellner, Mariann Gyöngyösi, Sibylle Madlener, Elisabeth Simader, Christian Gabriel, Michael Mildner, Hendrik Jan Ankersmit
Software Mentions: 3
Published: about 9 years ago
10.1038/srep34583
Dissection of brassinosteroid-regulated proteins in rice embryos during germination by quantitative proteomicsCited by: 17
Author(s): Qianfeng Li, Min Xiong, Peng Xu, Li‐Chun Huang, Changquan Zhang
Software Mentions: 3
Published: about 8 years ago
10.1038/s41598-018-24951-6
Resting-state fMRI study of brain activation using low-intensity repetitive transcranial magnetic stimulation in ratsCited by: 24
Author(s): Bhedita J. Seewoo, Kirk W. Feindel, Sarah J. Etherington, Jennifer Rodger
Software Mentions: 3
Published: over 6 years ago
10.1038/s41598-020-67894-7
Disease-related cellular protein networks differentially affected under different EGFR mutations in lung adenocarcinomaCited by: 10
Author(s): Toshihide Nishimura, Hiroki Nakamura, Ayako Yachie‐Kinoshita, Takeshi Hase, Kiyonaga Fujii, Hirotaka Koizumi, Saeko Naruki, Masayuki Takagi, Yoshikazu Matsuoka, Naoki Furuya, Harubumi Kato, Hisashi Saji
Software Mentions: 3
Published: over 4 years ago
10.1038/s41598-021-90957-2
Efficiency of a pilot scheme for the separate collection of the biowaste from municipal solid waste in SpainCited by: 7
Author(s): Antonio Gallardo, Francisco J. Colomer Mendoza, Mar Carlos-Alberola, Cristóbal Badenes, Natalia Edo-Alcón, Joan Esteban-Altabella
Software Mentions: 3
Published: over 3 years ago
10.3390/ijms17040540
A Proteomic Approach for the Identification of Up-Regulated Proteins Involved in the Metabolic Process of the LeiomyomaCited by: 13
Author(s): Blendi Ura, Federica Scrimin, Giorgio Arrigoni, Cinzia Franchin, Lorenzo Monasta, Giuseppe Ricci
Software Mentions: 3
Published: over 8 years ago
10.3390/ijms20174229
Comparative Quantitative Analysis of Porcine Optic Nerve Head and Retina SubproteomesCited by: 6
Author(s): Sebastian Funke, Carsten Schmelter, Sascha D. Markowitsch, Natarajan Perumal, Janis C. Heyne, Katharina Bell, Norbert Pfeiffer, Franz H. Grus
Software Mentions: 3
Published: over 5 years ago
10.1186/s12967-021-02723-7
Biomarkers of COVID-19 severity may not serve patients with polycystic ovary syndromeCited by: 1
Author(s): Abu Saleh Md Moin, Manjula Nandakumar, Thozhukat Sathyapalan, Stephen L. Atkin, Alexandra E. Butler
Software Mentions: 3
Published: almost 4 years ago
10.1186/gb-2008-9-s2-s8
Linking genes to literature: text mining, information extraction, and retrieval applications for biologyCited by: 198
Author(s): Martin Krallinger, Alfonso Valencia, Lynette Hirschman
Software Mentions: 2
Published: over 16 years ago
10.1155/2013/510208
A Systems Biology Approach to Characterize Biomarkers for Blood Stasis Syndrome of Unstable Angina Patients by Integrating MicroRNA and Messenger RNA Expression ProfilingCited by: 18
Author(s): Jie Wang, Yu Gui
Software Mentions: 2
Published: almost 12 years ago
10.1186/s13643-020-01455-x
Risk factors for gambling and problem gambling: a protocol for a rapid umbrella review of systematic reviews and meta-analysesCited by: 2
Author(s): Caryl Beynon, Nicola Pearce‐Smith, Rachel Clark
Software Mentions: 2
Published: over 4 years ago
10.3390/nu13041363
Unhealthy Diet Pattern Mediates the Disproportionate Prevalence of Obesity among Adults with Socio-Economic Disadvantage: An Australian Representative Cross-Sectional StudyCited by: 6
Author(s): Canaan Negash Seifu, Paul Fahey, Evan Atlantis
Software Mentions: 2
Published: over 3 years ago
10.1371/journal.pone.0092839
Effects of Straw Incorporation on Soil Organic Matter and Soil Water-Stable Aggregates Content in Semiarid Regions of Northwest ChinaCited by: 46
Author(s): Peng Zhang, Ting Wei, Zhikuan Jia, Qingfang Han, Xiaolong Ren, Yongping Li
Software Mentions: 2
Published: almost 11 years ago
10.1155/2020/8031541
Lifestyle and Sociodemographic and Economic Characteristics of Patients with Lung Cancer in MoroccoCited by: 3
Author(s): Imane Harkati, Mohamed Kamal Hilali, Nezha Oumghar, Mouna Khouchani, Mohamed Loukid
Software Mentions: 2
Published: almost 5 years ago
10.2196/jmir.9464
Efficacy of a Parent-Based, Indicated Prevention for Anorexia Nervosa: Randomized Controlled TrialCited by: 17
Author(s): Corinna Jacobi, K Hutter, Ulrike Völker, K. Möbius, R. Richter, Mickey Trockel, Megan Jones Bell, James Lock, C. Barr Taylor
Software Mentions: 2
Published: about 6 years ago
10.1038/s41598-021-96652-6
Low-grade albuminuria in adult and elderly individuals with diabetes mellitus and arterial hypertension accompanied by Primary Health CareCited by: 0
Author(s): Matheus Augusto Soares de Resende, Emily de Souza Ferreira, Heloísa Helena Dias, Daniel Santos, Clara Regina Santos Batistelli, Luiza Delazari Borges, Luma de Oliveira Comini, Tiago Ricardo Moreira, Glauce Dias da Costa, Eunice Ferreira da Silva, Rodrigo Gomes da Silva, Rosângela Minardi Mitre Cotta
Software Mentions: 2
Published: over 3 years ago
10.1186/s13027-020-00324-5
Design and feasibility of a novel program of cervical screening in Nigeria: self-sampled HPV testing paired with visual triageCited by: 23
Author(s): Kanan Desai, Kayode Olusegun Ajenifuja, Adekunbiola Aina Banjo, Clement A. Adepiti, Akiva P. Novetsky, Cathy Sebag, Mark H. Einstein, Temitope Oyinloye, Tamara R. Litwin, Matt Horning, Fatai Olatunde Olanrewaju, Mufutau Muphy Oripelaye, Esther Kikelomo Afolabi, Oluwole Odujoko, Philip E. Castle, Sameer Antani, Benjamin K. Wilson, Liming Hu, Courosh Mehanian, Maria Demarco, Julia C. Gage, Zhiyun Xue, L. Rodney Long, Li C. Cheung, Didem Egemen, Nicolas Wentzensen, Mark Schiffman
Software Mentions: 2
Published: about 4 years ago
10.3389/fpsyt.2017.00178
Feasibility and Accessibility of a Tailored Intervention for Informal Caregivers of People with Severe Psychiatric Disorders: a Pilot StudyCited by: 13
Author(s): Shyhrete Rexhaj, Claude Leclerc, Charles Bonsack, Philippe Golay, Jérôme Favrod
Software Mentions: 1
Published: over 7 years ago
10.1177/0036933020951927
Virtual surgical education for core surgical trainees in the Yorkshire deanery during the COVID-19 pandemicCited by: 13
Author(s): Ryan Laloo, Andrea Giorga, Andrew Williams, Chandra Shekhar Biyani, Marina Yiasemidou
Software Mentions: 1
Published: over 4 years ago
10.1002/ieam.4167
Validation of AIST‐SHANEL Model Based on Spatiotemporally Extensive Monitoring Data of Linear Alkylbenzene Sulfonate in Japan: Toward a Better Strategy on Deriving Predicted Environmental ConcentrationsCited by: 6
Author(s): Tohru Nishioka, Yoshiaki Iwasaki, Yuriko Ishikawa, Masayuki Yamane, Osamu Morita, Hiroshi Honda
Software Mentions: 1
Published: over 5 years ago
10.3389/fpsyg.2021.689632
The Role of Experience and Gender in Founders' Business Planning Activities: A Meta AnalysisCited by: 1
Author(s): Jun Ma, Shuxing Chen, Yenchun Jim Wu, Min Shi
Software Mentions: 1
Published: over 3 years ago
10.31557/APJCP.2021.22.4.1325
Outcomes of Laparoscopic Versus Open Surgery in Elderly Patients with Rectal CancerCited by: 3
Author(s): Qi Zhang, Jianwei Liang, Jianan Chen, Shiwen Mei, Zheng Wang
Software Mentions: 1
Published: almost 4 years ago
10.1186/1755-1536-2-7
Focus on collagen: in vitro systems to study fibrogenesis and antifibrosis _ state of the artCited by: 120
Author(s): Clarice Zc Chen, Michael Raghunath
Software Mentions: 1
Published: about 15 years ago
10.3389/fbioe.2021.633468
Biosynthesis of Silver Nanoparticles by Aspergillus terreus: Characterization, Optimization, and Biological ActivitiesCited by: 31
Author(s): Walid A. Lotfy, Basma M. Alkersh, Soraya A. Sabry, Hanan A. Ghozlan
Software Mentions: 1
Published: over 3 years ago
10.3390/cancers12071708
Protein Conformational Changes in Breast Cancer Sera Using Infrared Spectroscopic AnalysisCited by: 25
Author(s): Hemendra Ghimire, Chakravarthy Garlapati, E. A. M. Janssen, Uma Krishnamurti, Gengsheng Qin, Ritu Aneja, A. G. U. Perera
Software Mentions: 1
Published: over 4 years ago
10.3390/toxins7030791
Effects of Increasing Concentrations of Sodium Sulfite on Deoxynivalenol and Deoxynivalenol Sulfonate Concentrations of Maize Kernels and Maize Meal Preserved at Various Moisture ContentCited by: 18
Author(s): Marleen Paulick, Inga Rempe, Susanne Kersten, Dian Schatzmayr, Heidi E. Schwartz-Zimmermann, Sven Dänicke
Software Mentions: 1
Published: almost 10 years ago
10.3389/fphar.2021.697287
Clinical Efficacy and Safety of Different Doses of Sildenafil in the Treatment of Persistent Pulmonary Hypertension of the Newborn: A Network Meta-analysisCited by: 3
Author(s): Li Sun, Chunxia Wang, Yulu Zhou, Wei Sun, Chun‐Jiang Wang
Software Mentions: 1
Published: over 3 years ago