Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

cran projects 6,234

cran: diveMove
Dive Analysis and Calibration
Papers that mentioned: 35
cran: dunn.test
Dunn's Test of Multiple Comparisons Using Rank Sums
Papers that mentioned: 35
cran: SOAR
Memory management in R by delayed assignments
Papers that mentioned: 35
cran: PopGenReport
A Simple Framework to Analyse Population and Landscape Genetic Data
Papers that mentioned: 35
cran: moments
Moments, Cumulants, Skewness, Kurtosis and Related Tests
Papers that mentioned: 34
cran: ca
Simple, Multiple and Joint Correspondence Analysis
Papers that mentioned: 34
cran: strucchange
Testing, Monitoring, and Dating Structural Changes
Papers that mentioned: 34
cran: GFA
Group Factor Analysis
Papers that mentioned: 34
cran: rpart.plot
Plot 'rpart' Models: An Enhanced Version of 'plot.rpart'
Papers that mentioned: 34
cran: DOS
Design of Observational Studies
Papers that mentioned: 34
cran: stringi
Fast and Portable Character String Processing Facilities
Papers that mentioned: 34
cran: fields
Tools for Spatial Data
Papers that mentioned: 34
cran: KernSmooth
Functions for Kernel Smoothing Supporting Wand & Jones (1995)
Papers that mentioned: 34
cran: class
Functions for Classification
Papers that mentioned: 34
cran: sctransform
Variance Stabilizing Transformations for Single Cell UMI Data
Papers that mentioned: 34
cran: survMisc
Miscellaneous Functions for Survival Data
Papers that mentioned: 34
cran: fda
Functional Data Analysis
Papers that mentioned: 34
cran: splancs
Spatial and Space-Time Point Pattern Analysis
Papers that mentioned: 33
cran: data.table
Extension of 'data.frame'
Papers that mentioned: 33
cran: poweRlaw
Analysis of Heavy Tailed Distributions
Papers that mentioned: 33
cran: dlib
Allow Access to the 'Dlib' C++ Library
Papers that mentioned: 33
cran: config
Manage Environment Specific Configuration Values
Papers that mentioned: 33
cran: Momocs
Morphometrics using R
Papers that mentioned: 33
cran: secr
Spatially Explicit Capture-Recapture
Papers that mentioned: 33
cran: diversitree
Comparative 'Phylogenetic' Analyses of Diversification
Papers that mentioned: 33
cran: bibliometrix
Comprehensive Science Mapping Analysis
Papers that mentioned: 33
cran: Nonpareil
Metagenome Coverage Estimation and Projections for 'Nonpareil'
Papers that mentioned: 33
cran: CLA
Critical Line Algorithm in Pure R
Papers that mentioned: 33
cran: klaR
Classification and Visualization
Papers that mentioned: 33
cran: DAAG
Data Analysis and Graphics Data and Functions
Papers that mentioned: 33
cran: cgdsr
R-Based API for Accessing the MSKCC Cancer Genomics Data Server (CGDS)
Papers that mentioned: 33
cran: forcats
Tools for Working with Categorical Variables (Factors)
Papers that mentioned: 33
cran: NBPSeq
Negative Binomial Models for RNA-Sequencing Data
Papers that mentioned: 32
cran: NDP
Interactive Presentation for Working with Normal Distribution
Papers that mentioned: 32
cran: Iso
Functions to Perform Isotonic Regression
Papers that mentioned: 32
cran: VSURF
Variable Selection Using Random Forests
Papers that mentioned: 32
cran: MBA
Multilevel B-Spline Approximation
Papers that mentioned: 32
cran: TOSTER
Two One-Sided Tests (TOST) Equivalence Testing
Papers that mentioned: 32
cran: PIPS
Predicted Interval Plots
Papers that mentioned: 32
cran: ineq
Measuring Inequality, Concentration, and Poverty
Papers that mentioned: 32
cran: sem
Structural Equation Models
Papers that mentioned: 32
cran: xtable
Export Tables to LaTeX or HTML
Papers that mentioned: 32
cran: BE
Bioequivalence Study Data Analysis
Papers that mentioned: 32
cran: BEACH
Biometric Exploratory Analysis Creation House
Papers that mentioned: 32
cran: VCA
Variance Component Analysis
Papers that mentioned: 32
cran: metacoder
Tools for Parsing, Manipulating, and Graphing Taxonomic Abundance Data
Papers that mentioned: 32
cran: mmod
Modern Measures of Population Differentiation
Papers that mentioned: 32
cran: SoDA
Functions and Examples for "Software for Data Analysis"
Papers that mentioned: 32
cran: flexmix
Flexible Mixture Modeling
Papers that mentioned: 32
cran: ggExtra
Add Marginal Histograms to 'ggplot2', and More 'ggplot2' Enhancements
Papers that mentioned: 32
cran: glmm
Generalized Linear Mixed Models via Monte Carlo Likelihood Approximation
Papers that mentioned: 32
cran: DataGraph
Export Data from 'R' to 'DataGraph'
Papers that mentioned: 32
cran: mboost
Model-Based Boosting
Papers that mentioned: 32
cran: profile
Read, Manipulate, and Write Profiler Data
Papers that mentioned: 32
cran: SuperExactTest
Exact Test and Visualization of Multi-Set Intersections
Papers that mentioned: 32
cran: tnet
Weighted, Two-Mode, and Longitudinal Networks Analysis
Papers that mentioned: 32
cran: SEL
Semiparametric Elicitation
Papers that mentioned: 32
cran: jtools
Analysis and Presentation of Social Scientific Data
Papers that mentioned: 32
cran: HS
Homogenous Segmentation for Spatial Lines Data
Papers that mentioned: 32
cran: ResourceSelection
Resource Selection (Probability) Functions for Use-Availability Data
Papers that mentioned: 32
cran: AST
Age-Spatial-Temporal Model
Papers that mentioned: 32
cran: LMERConvenienceFunctions
Model Selection and Post-Hoc Analysis for (G)LMER Models
Papers that mentioned: 31
cran: IAT
Cleaning and Visualizing Implicit Association Test (IAT) Data
Papers that mentioned: 31
cran: blme
Bayesian Linear Mixed-Effects Models
Papers that mentioned: 31
cran: colorspace
A Toolbox for Manipulating and Assessing Colors and Palettes
Papers that mentioned: 31
cran: clusterSim
Searching for Optimal Clustering Procedure for a Data Set
Papers that mentioned: 31
cran: SRS
Scaling with Ranked Subsampling
Papers that mentioned: 31
cran: TreePar
Estimating birth and death rates based on phylogenies
Papers that mentioned: 31
cran: treemap
Treemap Visualization
Papers that mentioned: 31
cran: meme
Create Meme
Papers that mentioned: 31
cran: CircStats
Circular Statistics, from "Topics in Circular Statistics" (2001)
Papers that mentioned: 31
cran: MPN
Most Probable Number and Other Microbial Enumeration Techniques
Papers that mentioned: 31
cran: taxize
Taxonomic Information from Around the Web
Papers that mentioned: 31
cran: ggbeeswarm
Categorical Scatter (Violin Point) Plots
Papers that mentioned: 31
cran: TopDom
An Efficient and Deterministic Method for Identifying Topological Domains in Genomes
Papers that mentioned: 31
cran: venneuler
Venn and Euler Diagrams
Papers that mentioned: 31
cran: AID
Box-Cox Power Transformation
Papers that mentioned: 31
cran: plm
Linear Models for Panel Data
Papers that mentioned: 31
cran: mokken
Conducts Mokken Scale Analysis
Papers that mentioned: 30
cran: AMR
Antimicrobial Resistance Data Analysis
Papers that mentioned: 30
cran: locfdr
Computes Local False Discovery Rates
Papers that mentioned: 30
cran: psy
Various Procedures Used in Psychometrics
Papers that mentioned: 30
cran: SAMtool
Stock Assessment Methods Toolkit
Papers that mentioned: 30
cran: APIS
Auto-Adaptive Parentage Inference Software Tolerant to Missing Parents
Papers that mentioned: 30
cran: PoissonSeq
Papers that mentioned: 30
cran: MiRKAT
Microbiome Regression-Based Kernel Association Tests
Papers that mentioned: 30
cran: WebGestaltR
Gene Set Analysis Toolkit WebGestaltR
Papers that mentioned: 30
cran: mi
Missing Data Imputation and Model Checking
Papers that mentioned: 30
cran: robumeta
Robust Variance Meta-Regression
Papers that mentioned: 30
cran: rcdk
Interface to the 'CDK' Libraries
Papers that mentioned: 30
cran: M3
Reading M3 files
Papers that mentioned: 30
cran: earth
Multivariate Adaptive Regression Splines
Papers that mentioned: 30
cran: CFC
Cause-Specific Framework for Competing-Risk Analysis
Papers that mentioned: 30
cran: CTP
Closed Testing Procedure (CTP)
Papers that mentioned: 30
cran: SAR
Smart Adaptive Recommendations
Papers that mentioned: 30
cran: CRAC
Cosmology R Analysis Code
Papers that mentioned: 29
cran: loo
Efficient Leave-One-Out Cross-Validation and WAIC for Bayesian Models
Papers that mentioned: 29
cran: gvlma
Global Validation of Linear Models Assumptions
Papers that mentioned: 29
cran: NADA
Nondetects and Data Analysis for Environmental Data
Papers that mentioned: 29
cran: ipred
Improved Predictors
Papers that mentioned: 29