Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: Iso
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/Iso
Functions to Perform Isotonic Regression
14 versions
Latest release: about 1 year ago
24 dependent packages
1,641 downloads last month
Papers Mentioning Iso 32
10.1002/advs.201901850
<i>Mesostigma viride</i> Genome and Transcriptome Provide Insights into the Origin and Evolution of StreptophytaCited by: 29
Author(s): Zhe Liang, Yuke Geng, Changmian Ji, Hongwu Du, Chui Eng Wong, Qian Zhang, Ye Zhang, Pingxian Zhang, Adeel Riaz, Sadaruddin Chachar, Yike Ding, Jing Wen, Yun-Wen Wu, Mingcheng Wang, Hongkun Zheng, Yanmin Wu, Viktor Demko, Lisha Shen, Han Xiao, Pengpeng Zhang, Xiaofeng Gu, Hao Yu
Software Mentions: 10
Published: about 5 years ago
10.1111/pbi.12958
The developmental dynamics of the <i>Populus</i> stem transcriptomeCited by: 92
Author(s): Qing Chao, Zili Gao, Dong Zhang, Biligen-Gaowa Zhao, Fengqin Dong, Chunxiang Fu, Lijun Liu, Bai-Chen Wang
Software Mentions: 8
Published: over 6 years ago
10.1111/age.12962
Using online tools at the Bovine Genome Database to manually annotate genes in the new reference genomeCited by: 2
Author(s): Deborah A. Triant, J. J. Le Tourneau, Colin Diesh, Deepak Unni, Md. Shamimuzzaman, Amy T. Walsh, Jack M. Gardiner, Anna K Goldkamp, Yahan Li, Hung N. Nguyen, Courtney Roberts, Zhichao Zhao, L. J. Alexander, Jared E. Decker, Robert D. Schnabel, Steven G. Schroeder, Tad S. Sonstegard, Jeremy F. Taylor, Rocío Melissa Rivera, Darren E. Hagen, Christine G. Elsik
Software Mentions: 6
Published: over 4 years ago
10.1093/g3journal/jkab189
Long-read transcriptome and other genomic resources for the angiosperm <i>Silene noctiflora</i>Cited by: 7
Author(s): Alissa M. Williams, Michael W. Itgen, Amanda K. Broz, Olivia G. Carter, Daniel B Sloan
Software Mentions: 6
Published: over 3 years ago
10.1371/journal.pbio.3001146
Anesthetics fragment hippocampal network activity, alter spine dynamics, and affect memory consolidationCited by: 26
Author(s): Yang Wei, Mattia Chini, Jastyn A. Pöpplau, A. Formozov, Alexander Dieter, Patrick Piechocinski, Cynthia Rais, Fabio Morellini, Olaf Sporns, Ileana L. Hanganu‐Opatz, J. Simon Wiegert
Software Mentions: 6
Published: over 3 years ago
10.3389/fgene.2019.01126
Characterization of Full-Length Transcriptome Sequences and Splice Variants of Lateolabrax maculatus by Single-Molecule Long-Read Sequencing and Their Involvement in Salinity RegulationCited by: 29
Author(s): Yuan Tian, Haishen Wen, Xin Qi, Xiaoyan Zhang, Shikai Liu, Bingyu Li, Yalong Sun, Jifang Li, Feng He, Wenzhao Yang, Yun Li
Software Mentions: 5
Published: almost 5 years ago
10.1186/s12864-019-5838-3
Genome-wide profiling of the alternative splicing provides insights into development in Plutella xylostellaCited by: 6
Author(s): Qian Zhao, Weimin Zhong, Weiyi He, Yiying Li, Yaqing Li, Tianpu Li, Liette Vasseur, Minsheng You
Software Mentions: 5
Published: over 5 years ago
10.1371/journal.pbio.3001017
Single-cell RNA-seq analysis of mouse preimplantation embryos by third-generation sequencingCited by: 38
Author(s): Xiaoying Fan, Dong Tang, Yuhan Liao, Pidong Li, Yu Zhang, Minxia Wang, Fan Liang, Xiao Wang, Yun Gao, Lu Wen, Depeng Wang, Yan Wang, Fuchou Tang
Software Mentions: 5
Published: almost 4 years ago
10.3390/genes12060896
Comparative Transcriptome Analysis Reveals Sex-Based Differences during the Development of the Adult Parasitic Wasp Cotesia vestalis (Hymenoptera: Braconidae)Cited by: 2
Author(s): Yuenan Zhou, Pei‐Ling Yang, Shuang Xie, Min Shi, Jianhua Huang, Zhizhi Wang, Xue-Xin Chen
Software Mentions: 4
Published: over 3 years ago
10.1186/s12915-021-00963-z
Hidden genomic features of an invasive malaria vector, Anopheles stephensi, revealed by a chromosome-level genome assemblyCited by: 64
Author(s): Mahul Chakraborty, Arunachalam Ramaiah, Adriana Adolfi, Paige Halas, Bhagyashree Kaduskar, Luna Thanh Ngo, Suvratha Jayaprasad, Kiran Paul, Saurabh Whadgar, Subhashini Srinivasan, Suresh Subramani, Ethan Bier, Anthony A. James, J. J. Emerson
Software Mentions: 4
Published: over 3 years ago
10.3389/fgene.2019.00384
Reviving the Transcriptome Studies: An Insight Into the Emergence of Single-Molecule Transcriptome SequencingCited by: 81
Author(s): Bo Wang, Vivek Kumar, Andrew Olson, Doreen Ware
Software Mentions: 4
Published: over 5 years ago
10.3389/fpls.2020.01278
Combined Proteome and Transcriptome Analysis of Heat-Primed Azalea Reveals New Insights Into Plant Heat Acclimation MemoryCited by: 14
Author(s): Xiuyun Wang, Li Zheng, Bing Liu, Hong Zhou, Mohamed S. Elmongy, Yiping Xia
Software Mentions: 3
Published: about 4 years ago
10.1093/gigascience/giaa021
De novo assembly of the cattle reference genome with single-molecule sequencingCited by: 343
Author(s): Benjamin D. Rosen, Derek M. Bickhart, Robert D. Schnabel, Sergey Koren, Christine G. Elsik, Elizabeth Tseng, Troy N. Rowan, Wai Yee Low, Aleksey V. Zimin, Christine Couldrey, Richard J. Hall, Wenli Li, Arang Rhie, Jay Ghurye, Stephanie McKay, Françoise Thibaud‐Nissen, Jinna Hoffman, Brenda M. Murdoch, W. M. Snelling, T. G. McDaneld, John A. Hammond, John C. Schwartz, Wilson Nandolo, Darren E. Hagen, Christian Dreischer, Sebastian J. Schultheiß, Steven G. Schroeder, Adam M. Phillippy, John B. Cole, Curtis P. Van Tassell, George E. Liu, Timothy P. L. Smith, Juan F. Medrano
Software Mentions: 3
Published: over 4 years ago
10.1038/celldisc.2017.31
Long read reference genome-free reconstruction of a full-length transcriptome from Astragalus membranaceus reveals transcript variants involved in bioactive compound biosynthesisCited by: 85
Author(s): Jun Li, Yuka Harata-Lee, Matthew D. Denton, Qi Feng, Judith R. Rathjen, Zhibo Qu, David L. Adelson
Software Mentions: 2
Published: about 7 years ago
10.1002/1878-0261.12576
Identification of Eph receptor signaling as a regulator of autophagy and a therapeutic target in colorectal carcinomaCited by: 9
Author(s): Michael DiPrima, Dunrui Wang, Alix Tröster, Dragan Maric, Nekane Terrades-García, Tae‐Kyu Ha, Hyo‐Bum Kwak, David Sánchez‐Martín, D. Kudlinzki, Harald Schwalbe, Giovanna Tosato
Software Mentions: 2
Published: about 5 years ago
10.1186/s12864-019-6441-3
SMRT sequencing of a full-length transcriptome reveals transcript variants involved in C18 unsaturated fatty acid biosynthesis and metabolism pathways at chilling temperature in Pennisetum giganteumCited by: 12
Author(s): Qingyuan Li, Conglin Xiang, Lin Xu, Jinghua Cui, Shao Ping Fu, Baolin Chen, Shoukun Yang, Pan Wang, Yanfeng Xie, Ming Wei, Zhanchang Wang
Software Mentions: 2
Published: almost 5 years ago
10.3389/fgene.2021.683408
PacBio Iso-Seq Improves the Rainbow Trout Genome Annotation and Identifies Alternative Splicing Associated With Economically Important PhenotypesCited by: 22
Author(s): Ali R. Ali, Gary H. Thorgaard, Mohamed Salem
Software Mentions: 2
Published: over 3 years ago
10.3390/genes9010043
Isoform Sequencing and State-of-Art Applications for Unravelling Complexity of Plant TranscriptomesCited by: 54
Author(s): Dong An, Hieu X. Cao, Changsheng Li, Klaus Humbeck, Wenqin Wang
Software Mentions: 2
Published: almost 7 years ago
10.1371/journal.pone.0181324
In vitro study of accuracy of subaxial cervical pedicle screw insertion using calipers based on the gravity lineCited by: 2
Author(s): Xiang Yao, Shiqing Liu
Software Mentions: 2
Published: over 7 years ago
10.3390/nu13041051
Energy Intake and Appetite Sensations Responses to Aquatic Cycling in Healthy Women: The WatHealth StudyCited by: 3
Author(s): Lore Metz, Laurie Isacco, Nicole Fearnbach, Bruno Pereira, David Torgerson, Martine Duclos
Software Mentions: 1
Published: over 3 years ago
10.3762/bjoc.15.252
Synthetic terpenoids in the world of fragrances: Iso E Super<sup>®</sup>is the showcaseCited by: 21
Author(s): Alexey Stepanyuk, Andreas Kirschning
Software Mentions: 1
Published: about 5 years ago
10.1002/mbo3.47
Diversity of symbioses between chemosynthetic bacteria and metazoans at the<scp>G</scp>uiness cold seep site (<scp>G</scp>ulf of<scp>G</scp>uinea,<scp>W</scp>est<scp>A</scp>frica)Cited by: 25
Author(s): Sébastien Duperron, Clara F. Rodrigues, Nelly Léger, Kamil M. Szafrański, Carole Decker, Karine Olu, Sylvie M. Gaudron
Software Mentions: 1
Published: almost 12 years ago
10.1128/MRA.01221-18
Draft Genome Assembly of the Poultry Red Mite, <i>Dermanyssus gallinae</i>Cited by: 25
Author(s): Stewart T. G. Burgess, Kathryn Bartley, Francesca Nunn, Harry W. Wright, Margaret Hughes, Matthew Gemmell, Sam Haldenby, Steve Paterson, Stéphane Rombauts, Fiona M. Tomley, Damer P. Blake, James Pritchard, Sabine Schicht, Christina Strübe, Øivind Øines, Thomas Van Leeuwen, Yves Van de Peer, Alasdair J. Nisbet
Software Mentions: 1
Published: about 6 years ago
10.7717/peerj.11085
Segmental analysis by speckle-tracking echocardiography of the left ventricle response to isoproterenol in male and female miceCited by: 7
Author(s): Élisabeth Walsh-Wilkinson, Marie Arsenault, Jacques Couët
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pone.0113010
On the Evolution of Yeti, a Drosophila melanogaster Heterochromatin GeneCited by: 6
Author(s): Roberta Moschetti, Emanuele Celauro, Fulvio Cruciani, Ruggiero Caizzi, Patrizio Dimitri
Software Mentions: 1
Published: almost 10 years ago
10.7759/cureus.10724
Navigated Placement of Two Odontoid Screws Using the O-Arm Navigation System: A Technical Case ReportCited by: 0
Author(s): Clara K Starkweather, Ramin A. Morshed, Caleb Rutledge, Phiroz E. Tarapore
Software Mentions: 1
Published: about 4 years ago
10.1093/gigascience/giy009
Single-molecule, full-length transcript sequencing provides insight into the extreme metabolism of the ruby-throated hummingbird Archilochus colubrisCited by: 53
Author(s): Rachael E. Workman, Alexander M. Myrka, G. William Wong, Elizabeth Tseng, Kenneth C. Welch, Winston Timp
Software Mentions: 1
Published: over 6 years ago
10.4103/0019-5413.36993
Role of intraoperative Iso-C based navigation in challenging spine traumaCited by: 14
Author(s): Ashish Jaiswal, Ajoy Prasad Shetty, S. Rajasekaran
Software Mentions: 1
Published: almost 18 years ago
10.1002/acm2.12534
Radiation dose and image quality comparison during spine surgery with two different, intraoperative 3D imaging navigation systemsCited by: 30
Author(s): Rami Nachabé, Keith J. Strauss, Beth A. Schueler, Mohamad Bydon
Software Mentions: 1
Published: almost 6 years ago
10.1098/rsos.191501
Fauna of the Kemp Caldera and its upper bathyal hydrothermal vents (South Sandwich Arc, Antarctica)Cited by: 14
Author(s): Katrin Linse, Jonathan T. Copley, Douglas P. Connelly, Robert D Larter, David A. Pearce, Nicholas V. C. Polunin, Alex D. Rogers, Chong Chen, Andrew Clarke, Adrian G. Glover, Alastair G C Graham, Veerle Huvenne, Leigh Marsh, William D. Reid, Christopher Nicolai Roterman, Christopher J. Sweeting, Katrin Zwirglmaier, Paul A. Tyler
Software Mentions: 1
Published: about 5 years ago
10.1038/s41598-018-33245-w
Dual Porosity Protein-based Scaffolds with Enhanced Cell Infiltration and ProliferationCited by: 41
Author(s): Morteza Rasoulianboroujeni, Nasim Kiaie, Fahimeh Tabatabaei, Amir Yadegari, Farahnaz Fahimipour, Kimia Khoshroo, Lobat Tayebi
Software Mentions: 1
Published: about 6 years ago
10.1038/s41598-018-38021-4
Study of the whole genome, methylome and transcriptome of Cordyceps militarisCited by: 15
Author(s): Yujiao Chen, Yuqian Wu, Li Liu, Jianhua Feng, Tiancheng Zhang, Sheng Qin, Xingyu Zhao, Chaoxia Wang, Dongmei Li, Wei Han, Ming-Hui Shao, Ping Zhao, Jianfeng Xue, Xiaomin Liu, Hongjie Li, Enwei Zhao, Wei Zhao, Xijie Guo, Yongfeng Jin, Yaming Cao, Liwang Cui, Zheng Zhou, Qingyou Xia, Z. Rao, Yaozhou Zhang
Software Mentions: 1
Published: almost 6 years ago