Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: SRS
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/SRS
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Latest release: over 2 years ago
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Papers Mentioning SRS 31
10.1186/1471-2105-8-S1-S19
Biowep: a workflow enactment portal for bioinformatics applicationsCited by: 39
Author(s): Paolo Romano, Ezio Bartocci, G. Bertolini, Flavio De Paoli, Domenico Marra, Giancarlo Mauri, Emanuela Merelli, Luciano Milanesi
Software Mentions: 3
Published: over 17 years ago
10.1186/1471-2105-9-S2-S15
SWS: accessing SRS sites contents through Web ServicesCited by: 4
Author(s): Paolo Romano, Domenico Marra
Software Mentions: 3
Published: over 16 years ago
10.1186/s13040-015-0067-z
BioDB extractor: customized data extraction system for commonly used bioinformatics databasesCited by: 2
Author(s): Rajiv Karbhal, Sangeeta Sawant, Urmila Kulkarni‐Kale
Software Mentions: 3
Published: over 9 years ago
10.1186/1471-2105-10-S6-S15
Towards barcode markers in Fungi: an intron map of Ascomycota mitochondriaCited by: 36
Author(s): Mónica Santamaría, Saverio Vicario, Graziano Pappadà, Gaetano Scioscia, Claudio Scazzocchio, Cecilia Saccone
Software Mentions: 2
Published: over 15 years ago
10.3390/children8040262
Diagnostic Tools for Autism Spectrum Disorders by Gender: Analysis of Current Status and Future LinesCited by: 12
Author(s): Esperanza Navarro‐Pardo, Fernanda López-Ramón, Yurena Alonso-Esteban, Francisco Alcantud Marín
Software Mentions: 2
Published: over 3 years ago
10.1186/1471-2105-6-34
Cited by: 138Author(s): Sohrab P. Shah, Yong Huang, Tao Xu, Macaire Man Saint Yuen, John Ling, B. F. Francis Ouellette
Software Mentions: 1
Published: almost 20 years ago
10.1186/1471-2105-13-175
Seqcrawler: biological data indexing and browsing platformCited by: 0
Author(s): Olivier Sallou, Anthony Bretaudeau, Aurélien Roult
Software Mentions: 1
Published: over 12 years ago
10.1186/1471-2105-10-S10-S3
Francisella tularensis novicida proteomic and transcriptomic data integration and annotation based on semantic web technologiesCited by: 5
Author(s): Nadia Anwar, Ela Hunt
Software Mentions: 1
Published: about 15 years ago
10.1186/1471-2105-7-45
Querying the public databases for sequences using complex keywords contained in the feature linesCited by: 8
Author(s): Olivier Croce, Michaël Lamarre, Richard Christen
Software Mentions: 1
Published: almost 19 years ago
10.1186/1471-2105-7-70
BIOZON: a system for unification, management and analysis of heterogeneous biological dataCited by: 87
Author(s): Aaron Birkland, Golan Yona
Software Mentions: 1
Published: almost 19 years ago
10.1186/1471-2164-14-761
Genome sequence of Xanthomonas fuscans subsp. fuscansstrain 4834-R reveals that flagellar motility is not a general feature of xanthomonadsCited by: 54
Author(s): Armelle Darrasse, Sébastien Carrère, Valérie Barbe, Tristan Boureau, Mario L. Arrieta-Ortiz, Sophie Bonneau, Martial Briand, Chrystelle Brin, Stéphane Cociancich, Karine Durand, Stéphanie Fouteau, Lionel Gagnevin, Fabien Guérin, Endrick Guy, Arnaud Indiana, Ralf Koebnik, Emmanuelle Lauber, Alejandra Muñoz-Bodnar, Laurent Noël, Isabelle Pieretti, Stéphane Poussier, Olivier Pruvost, Isabelle Robène-Soustrade, Philippe Rott, Monique Royer, Laurana Serres-Giardi, Boris Szurek, Marie‐Anne Van Sluys, Valérie Verdier, Christian Vernière, Matthieu Arlat, Charles Manceau, Marie‐Agnès Jacques
Software Mentions: 1
Published: about 11 years ago
10.1186/1471-2164-10-616
The complete genome sequence of Xanthomonas albilineans provides new insights into the reductive genome evolution of the xylem-limited XanthomonadaceaeCited by: 139
Author(s): Isabelle Pieretti, Monique Royer, Valérie Barbe, Sébastien Carrère, Ralf Koebnik, Stéphane Cociancich, Arnaud Couloux, Armelle Darrasse, Jérôme Gouzy, Jacques Martin, Emmanuelle Lauber, Charles Manceau, Sophie Mangenot, Stéphane Poussier, Béatrice Segurens, Boris Szurek, Valérie Verdier, Matthieu Arlat, Philippe Rott
Software Mentions: 1
Published: almost 15 years ago
10.1186/s13040-017-0144-6
The Dark Proteome DatabaseCited by: 15
Author(s): Nelson Perdigão, Agostinho Rosa, Seán I. O’Donoghue
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pcbi.1007537
Molecular sampling at logarithmic rates for next-generation sequencingCited by: 0
Author(s): Caroline Horn, Julia Salzman
Software Mentions: 1
Published: almost 5 years ago
10.1371/journal.pone.0024716
pubmed2ensembl: A Resource for Mining the Biological Literature on GenesCited by: 33
Author(s): Joachim Baran, Martin Gerner, Maximilian Haeussler, Goran Nenadić, Casey M. Bergman
Software Mentions: 1
Published: about 13 years ago
10.1371/journal.pone.0211262
Using supervised learning to select audit targets in performance-based financing in health: An example from ZambiaCited by: 12
Author(s): Dhruv Grover, Sebastian Bauhoff, Jed Friedman
Software Mentions: 1
Published: almost 6 years ago
10.1186/1753-2000-2-18
Effects of school-based interventions on mental health stigmatization: a systematic reviewCited by: 125
Author(s): Howard Schachter, Alberta Girardi, Mylan Ly, Denise Lacroix, Andrew B Lumb, Judith van Berkom, Ritu Gill
Software Mentions: 1
Published: over 16 years ago
10.1186/gb-2008-9-6-r102
GMODWeb: a web framework for the generic model organism databaseCited by: 47
Author(s): Brian D. O’Connor, Allen Day, Scott Cain, Olivier Arnaiz, Linda Sperling, Lincoln Stein
Software Mentions: 1
Published: almost 17 years ago
10.1002/acm2.12105
Practical considerations of linear accelerator‐based frameless extracranial radiosurgery for treatment of occipital neuralgia for nonsurgical candidatesCited by: 4
Author(s): Travis Denton, Lisa B. E. Shields, J Howe, Todd Shanks, Aaron C. Spalding
Software Mentions: 1
Published: over 7 years ago
10.1186/1477-5956-7-27
Identification of protein functions using a machine-learning approach based on sequence-derived propertiesCited by: 44
Author(s): Bum Ju Lee, Moon Sun Shin, Young Joon Oh, Hae Seok Oh, Keun Ho Ryu
Software Mentions: 1
Published: over 15 years ago
10.3390/s18092877
Practical Use of Robot Manipulators as Intelligent Manufacturing SystemsCited by: 12
Author(s): Pablo J. Blanco, Fares J. Abu‐Dakka, Mohamed Abderrahim
Software Mentions: 1
Published: about 6 years ago
10.3390/ijerph18094798
Prenatal Exposure to Endocrine-Disrupting Chemicals and Subsequent Brain Structure Changes Revealed by Voxel-Based Morphometry and Generalized Q-Sampling MRICited by: 7
Author(s): Chao‐Yu Shen, Jun‐Cheng Weng, Jeng-Dau Tsai, Pen‐Hua Su, Ming-Chih Chou, Shu Li Wang
Software Mentions: 1
Published: over 3 years ago
10.3390/ijerph18158097
Effect of Exposure Angulation on the Occupational Radiation Exposure during Cardiac Angiography: Simulation StudyCited by: 5
Author(s): Younghoon Roh, Jung-Su Kim, Hyemin Park, Jungmin Kim, Dongryeol Ryu, Kukjin Chun, Jong-Kwon Seo, Bongki Lee, Byungryul Cho, Yongsu Yoon
Software Mentions: 1
Published: over 3 years ago
10.7554/eLife.66481
Dynamic persistence of UPEC intracellular bacterial communities in a human bladder-chip model of urinary tract infectionCited by: 33
Author(s): Kunal Sharma, Neeraj Dhar, Vivek V. Thacker, Thomas M Simonet, François Signorino-Gelo, Graham Knott, John D. McKinney
Software Mentions: 1
Published: over 3 years ago
10.1155/2010/289301
Prediction of Carbohydrate-Binding Proteins from Sequences Using Support Vector MachinesCited by: 11
Author(s): Seizi Someya, Masanori Kakuta, Mizuki Morita, Kazuya Sumikoshi, Wei Cao, Zhenyi Ge, Osamu Hirose, Shugo Nakamura, Tohru Terada, Kentaro Shimizu
Software Mentions: 1
Published: about 14 years ago
10.1093/jrr/rrt101
Results for local control and functional outcome after linac-based image-guided stereotactic radiosurgery in 190 patients with vestibular schwannomaCited by: 24
Author(s): Harun Badakhshi, R. Graf, Dirk Böhmer, Michael Synowitz, Edzard Wiener, Volker Budach
Software Mentions: 1
Published: about 11 years ago
10.1007/978-3-319-91287-5_49
Investigation of Confounding Factors in Measuring Tissue Saturation with NIRS Spatially Resolved SpectroscopyCited by: 12
Author(s): Zuzana Kovácsová, Gemma Bale, S. Mitra, Isabel de Roever, JH Meek, Nicola J. Robertson, Ilias Tachtsidis
Software Mentions: 1
Published: almost 7 years ago
10.1186/1471-2105-7-497
cPath: open source software for collecting, storing, and querying biological pathwaysCited by: 115
Author(s): Ethan Cerami, Gary D. Bader, Benjamin Groß, Chris Sander
Software Mentions: 1
Published: about 18 years ago
10.1186/1471-2105-8-367
BNDB – The Biochemical Network DatabaseCited by: 41
Author(s): Jan Küntzer, Christina Backes, Torsten Blum, Andreas Gerasch, Michael Kaufmann, Oliver Kohlbacher, Hans‐Peter Lenhof
Software Mentions: 1
Published: about 17 years ago
10.1186/1471-2105-15-S1-S3
Explorative search of distributed bio-data to answer complex biomedical questionsCited by: 10
Author(s): Marco Masseroli, Matteo Picozzi, Giorgio Ghisalberti, Stefano Ceri
Software Mentions: 1
Published: almost 11 years ago