Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: SRS

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/SRS

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Papers Mentioning SRS 31

10.1186/1471-2105-8-S1-S19
Biowep: a workflow enactment portal for bioinformatics applications
Cited by: 39
Author(s): Paolo Romano, Ezio Bartocci, G. Bertolini, Flavio De Paoli, Domenico Marra, Giancarlo Mauri, Emanuela Merelli, Luciano Milanesi
Software Mentions: 3
Published: over 17 years ago
10.1186/1471-2105-9-S2-S15
SWS: accessing SRS sites contents through Web Services
Cited by: 4
Author(s): Paolo Romano, Domenico Marra
Software Mentions: 3
Published: over 16 years ago
10.1186/s13040-015-0067-z
BioDB extractor: customized data extraction system for commonly used bioinformatics databases
Cited by: 2
Author(s): Rajiv Karbhal, Sangeeta Sawant, Urmila Kulkarni‐Kale
Software Mentions: 3
Published: over 9 years ago
10.1186/1471-2105-10-S6-S15
Towards barcode markers in Fungi: an intron map of Ascomycota mitochondria
Cited by: 36
Author(s): Mónica Santamaría, Saverio Vicario, Graziano Pappadà, Gaetano Scioscia, Claudio Scazzocchio, Cecilia Saccone
Software Mentions: 2
Published: over 15 years ago
10.3390/children8040262
Diagnostic Tools for Autism Spectrum Disorders by Gender: Analysis of Current Status and Future Lines
Cited by: 12
Author(s): Esperanza Navarro‐Pardo, Fernanda López-Ramón, Yurena Alonso-Esteban, Francisco Alcantud Marín
Software Mentions: 2
Published: over 3 years ago
10.1186/1471-2105-6-34
Cited by: 138
Author(s): Sohrab P. Shah, Yong Huang, Tao Xu, Macaire Man Saint Yuen, John Ling, B. F. Francis Ouellette
Software Mentions: 1
Published: over 19 years ago
10.1186/1471-2105-13-175
Seqcrawler: biological data indexing and browsing platform
Cited by: 0
Author(s): Olivier Sallou, Anthony Bretaudeau, Aurélien Roult
Software Mentions: 1
Published: about 12 years ago
10.1186/1471-2105-10-S10-S3
Francisella tularensis novicida proteomic and transcriptomic data integration and annotation based on semantic web technologies
Cited by: 5
Author(s): Nadia Anwar, Ela Hunt
Software Mentions: 1
Published: almost 15 years ago
10.1186/1471-2105-7-45
Querying the public databases for sequences using complex keywords contained in the feature lines
Cited by: 8
Author(s): Olivier Croce, Michaël Lamarre, Richard Christen
Software Mentions: 1
Published: over 18 years ago
10.1186/1471-2105-7-70
BIOZON: a system for unification, management and analysis of heterogeneous biological data
Cited by: 87
Author(s): Aaron Birkland, Golan Yona
Software Mentions: 1
Published: over 18 years ago
10.1186/1471-2164-14-761
Genome sequence of Xanthomonas fuscans subsp. fuscansstrain 4834-R reveals that flagellar motility is not a general feature of xanthomonads
Cited by: 54
Author(s): Armelle Darrasse, Sébastien Carrère, Valérie Barbe, Tristan Boureau, Mario L. Arrieta-Ortiz, Sophie Bonneau, Martial Briand, Chrystelle Brin, Stéphane Cociancich, Karine Durand, Stéphanie Fouteau, Lionel Gagnevin, Fabien Guérin, Endrick Guy, Arnaud Indiana, Ralf Koebnik, Emmanuelle Lauber, Alejandra Muñoz-Bodnar, Laurent Noël, Isabelle Pieretti, Stéphane Poussier, Olivier Pruvost, Isabelle Robène-Soustrade, Philippe Rott, Monique Royer, Laurana Serres-Giardi, Boris Szurek, Marie‐Anne Van Sluys, Valérie Verdier, Christian Vernière, Matthieu Arlat, Charles Manceau, Marie‐Agnès Jacques
Software Mentions: 1
Published: almost 11 years ago
10.1186/1471-2164-10-616
The complete genome sequence of Xanthomonas albilineans provides new insights into the reductive genome evolution of the xylem-limited Xanthomonadaceae
Cited by: 139
Author(s): Isabelle Pieretti, Monique Royer, Valérie Barbe, Sébastien Carrère, Ralf Koebnik, Stéphane Cociancich, Arnaud Couloux, Armelle Darrasse, Jérôme Gouzy, Jacques Martin, Emmanuelle Lauber, Charles Manceau, Sophie Mangenot, Stéphane Poussier, Béatrice Segurens, Boris Szurek, Valérie Verdier, Matthieu Arlat, Philippe Rott
Software Mentions: 1
Published: almost 15 years ago
10.1186/s13040-017-0144-6
The Dark Proteome Database
Cited by: 15
Author(s): Nelson Perdigão, Agostinho Rosa, Seán I. O’Donoghue
Software Mentions: 1
Published: about 7 years ago
10.1371/journal.pcbi.1007537
Molecular sampling at logarithmic rates for next-generation sequencing
Cited by: 0
Author(s): Caroline Horn, Julia Salzman
Software Mentions: 1
Published: almost 5 years ago
10.1371/journal.pone.0024716
pubmed2ensembl: A Resource for Mining the Biological Literature on Genes
Cited by: 33
Author(s): Joachim Baran, Martin Gerner, Maximilian Haeussler, Goran Nenadić, Casey M. Bergman
Software Mentions: 1
Published: almost 13 years ago
10.1371/journal.pone.0211262
Using supervised learning to select audit targets in performance-based financing in health: An example from Zambia
Cited by: 12
Author(s): Dhruv Grover, Sebastian Bauhoff, Jed Friedman
Software Mentions: 1
Published: over 5 years ago
10.1186/1753-2000-2-18
Effects of school-based interventions on mental health stigmatization: a systematic review
Cited by: 125
Author(s): Howard Schachter, Alberta Girardi, Mylan Ly, Denise Lacroix, Andrew B Lumb, Judith van Berkom, Ritu Gill
Software Mentions: 1
Published: about 16 years ago
10.1186/gb-2008-9-6-r102
GMODWeb: a web framework for the generic model organism database
Cited by: 47
Author(s): Brian D. O’Connor, Allen Day, Scott Cain, Olivier Arnaiz, Linda Sperling, Lincoln Stein
Software Mentions: 1
Published: over 16 years ago
10.1002/acm2.12105
Practical considerations of linear accelerator‐based frameless extracranial radiosurgery for treatment of occipital neuralgia for nonsurgical candidates
Cited by: 4
Author(s): Travis Denton, Lisa B. E. Shields, J Howe, Todd Shanks, Aaron C. Spalding
Software Mentions: 1
Published: over 7 years ago
10.1186/1477-5956-7-27
Identification of protein functions using a machine-learning approach based on sequence-derived properties
Cited by: 44
Author(s): Bum Ju Lee, Moon Sun Shin, Young Joon Oh, Hae Seok Oh, Keun Ho Ryu
Software Mentions: 1
Published: about 15 years ago
10.3390/s18092877
Practical Use of Robot Manipulators as Intelligent Manufacturing Systems
Cited by: 12
Author(s): Pablo J. Blanco, Fares J. Abu‐Dakka, Mohamed Abderrahim
Software Mentions: 1
Published: about 6 years ago
10.3390/ijerph18094798
Prenatal Exposure to Endocrine-Disrupting Chemicals and Subsequent Brain Structure Changes Revealed by Voxel-Based Morphometry and Generalized Q-Sampling MRI
Cited by: 7
Author(s): Chao‐Yu Shen, Jun‐Cheng Weng, Jeng-Dau Tsai, Pen‐Hua Su, Ming-Chih Chou, Shu Li Wang
Software Mentions: 1
Published: over 3 years ago
10.3390/ijerph18158097
Effect of Exposure Angulation on the Occupational Radiation Exposure during Cardiac Angiography: Simulation Study
Cited by: 5
Author(s): Younghoon Roh, Jung-Su Kim, Hyemin Park, Jungmin Kim, Dongryeol Ryu, Kukjin Chun, Jong-Kwon Seo, Bongki Lee, Byungryul Cho, Yongsu Yoon
Software Mentions: 1
Published: about 3 years ago
10.7554/eLife.66481
Dynamic persistence of UPEC intracellular bacterial communities in a human bladder-chip model of urinary tract infection
Cited by: 33
Author(s): Kunal Sharma, Neeraj Dhar, Vivek V. Thacker, Thomas M Simonet, François Signorino-Gelo, Graham Knott, John D. McKinney
Software Mentions: 1
Published: about 3 years ago
10.1155/2010/289301
Prediction of Carbohydrate-Binding Proteins from Sequences Using Support Vector Machines
Cited by: 11
Author(s): Seizi Someya, Masanori Kakuta, Mizuki Morita, Kazuya Sumikoshi, Wei Cao, Zhenyi Ge, Osamu Hirose, Shugo Nakamura, Tohru Terada, Kentaro Shimizu
Software Mentions: 1
Published: almost 14 years ago
10.1093/jrr/rrt101
Results for local control and functional outcome after linac-based image-guided stereotactic radiosurgery in 190 patients with vestibular schwannoma
Cited by: 24
Author(s): Harun Badakhshi, R. Graf, Dirk Böhmer, Michael Synowitz, Edzard Wiener, Volker Budach
Software Mentions: 1
Published: about 11 years ago
10.1007/978-3-319-91287-5_49
Investigation of Confounding Factors in Measuring Tissue Saturation with NIRS Spatially Resolved Spectroscopy
Cited by: 12
Author(s): Zuzana Kovácsová, Gemma Bale, S. Mitra, Isabel de Roever, JH Meek, Nicola J. Robertson, Ilias Tachtsidis
Software Mentions: 1
Published: over 6 years ago
10.1186/1471-2105-7-497
cPath: open source software for collecting, storing, and querying biological pathways
Cited by: 115
Author(s): Ethan Cerami, Gary D. Bader, Benjamin Groß, Chris Sander
Software Mentions: 1
Published: almost 18 years ago
10.1186/1471-2105-8-367
BNDB – The Biochemical Network Database
Cited by: 41
Author(s): Jan Küntzer, Christina Backes, Torsten Blum, Andreas Gerasch, Michael Kaufmann, Oliver Kohlbacher, Hans‐Peter Lenhof
Software Mentions: 1
Published: almost 17 years ago
10.1186/1471-2105-15-S1-S3
Explorative search of distributed bio-data to answer complex biomedical questions
Cited by: 10
Author(s): Marco Masseroli, Matteo Picozzi, Giorgio Ghisalberti, Stefano Ceri
Software Mentions: 1
Published: over 10 years ago