Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: tnet
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/tnet
Weighted, Two-Mode, and Longitudinal Networks Analysis
25 versions
Latest release: over 4 years ago
6 dependent packages
838 downloads last month
Papers Mentioning tnet 32
10.3390/tropicalmed5020064
Disease Ecology of Rickettsial Species: A Data Science ApproachCited by: 6
Author(s): Sergé Morand, Kittipong Chaisiri, Anamika Kritiyakan, Rawadee Kumlert
Software Mentions: 13
Published: over 4 years ago
10.1038/srep43932
Implications of the cattle trade network in Cameroon for regional disease prevention and controlCited by: 60
Author(s): Paolo Carlo Motta, Thibaud Porphyre, Ian Handel, Saidou M. Hamman, Victor Ngu Ngwa, Vincent N. Tanya, K. L. Morgan, Rob Christley, Barend M. deC. Bronsvoort
Software Mentions: 10
Published: over 7 years ago
10.1093/gigascience/giy014
Bipartite graphs in systems biology and medicine: a survey of methods and applicationsCited by: 116
Author(s): Georgios A. Pavlopoulos, Panagiota I. Kontou, Athanasia Pavlopoulou, Costas Bouyioukos, Evripides Markou, Pantelis G. Bagos
Software Mentions: 10
Published: over 6 years ago
10.3389/fvets.2018.00071
Effective Network Size Predicted From Simulations of Pathogen Outbreaks Through Social Networks Provides a Novel Measure of Structure-Standardized Group SizeCited by: 12
Author(s): Collin M. McCabe, Charles L. Nunn
Software Mentions: 8
Published: over 6 years ago
10.1371/journal.pone.0116356
Effects of Hierarchical Roost Removal on Northern Long-Eared Bat (Myotis septentrionalis) Maternity ColoniesCited by: 26
Author(s): Alexander Silvis, W. Mark Ford, Eric R. Britzke
Software Mentions: 8
Published: almost 10 years ago
10.3390/vetsci7030138
Cattle Manure Trade Network Analysis and the Relevant Spatial Pathways in an Endemic Area of Foot and Mouth Disease in Northern ThailandCited by: 0
Author(s): Chalutwan Sansamur, Anuwat Wiratsudakul, Arisara Charoenpanyanet, Veerasak Punyapornwithaya
Software Mentions: 7
Published: about 4 years ago
10.7717/peerj.5303
Conflict resolution in socially housed Sumatran orangutans (<i>Pongo abelii</i>)Cited by: 9
Author(s): Kathrin Susanne Kopp, Katja Liebal
Software Mentions: 7
Published: over 6 years ago
10.1371/journal.pone.0173570
Does landscape connectivity shape local and global social network structure in white-tailed deer?Cited by: 17
Author(s): Erin L. Koen, Marie I. Tosa, Clayton K. Nielsen, Eric M. Schauber
Software Mentions: 7
Published: over 7 years ago
10.1186/s42523-019-0019-x
Ecological and microbiological diversity of chigger mites, including vectors of scrub typhus, on small mammals across stratified habitats in ThailandCited by: 17
Author(s): Kittipong Chaisiri, A. Christina Gill, Alexandr A. Stekolnikov, Soawapak Hinjoy, John McGarry, Alistair C. Darby, Sergé Morand, Benjamin L. Makepeace
Software Mentions: 6
Published: almost 5 years ago
10.7717/peerj.10563
Improving insect conservation across heterogeneous landscapes using species–habitat networksCited by: 5
Author(s): Andree Cappellari, Lorenzo Marini
Software Mentions: 6
Published: almost 4 years ago
10.1371/journal.pone.0096937
Roosting and Foraging Social Structure of the Endangered Indiana Bat (Myotis sodalis)Cited by: 35
Author(s): Alexander Silvis, Andrew B. Kniowski, Stanley D. Gehrt, W. Mark Ford
Software Mentions: 6
Published: over 10 years ago
10.1093/biosci/biw175
Using Social Network Measures in Wildlife Disease Ecology, Epidemiology, and ManagementCited by: 101
Author(s): Matthew J. Silk, Darren P. Croft, Richard J. Delahay, David J. Hodgson, Mike Boots, Nicola Weber, Robbie A. McDonald
Software Mentions: 6
Published: almost 8 years ago
10.1038/s41598-019-47087-7
Systems biology and network pharmacology of frailty reveal novel epigenetic targets and mechanismsCited by: 6
Author(s): Juan Carlos Gómez-Verján, Ricardo Ramírez‐Aldana, Mario Ulises Pérez‐Zepeda, Ricardo Quiroz‐Baez, Armando Luna–López, Luis Miguel Gutiérrez Robledo
Software Mentions: 5
Published: over 5 years ago
10.1371/journal.pone.0173146
The effect of excluding juveniles on apparent adult olive baboons (Papio anubis) social networksCited by: 26
Author(s): Piotr Fedurek, Julia Lehmann
Software Mentions: 5
Published: over 7 years ago
10.2196/jmir.7347
Tracing the Potential Flow of Consumer Data: A Network Analysis of Prominent Health and Fitness AppsCited by: 39
Author(s): Quinn Grundy, Fabian Held, Lisa Bero
Software Mentions: 4
Published: over 7 years ago
10.1371/journal.pcbi.1009127
Trip duration drives shift in travel network structure with implications for the predictability of spatial disease spreadCited by: 2
Author(s): J. R. Giles, Derek A. T. Cummings, Bryan T. Grenfell, Andrew J. Tatem, Elisabeth zu Erbach-Schoenberg, C Jessica E Metcalf, Amy Wesolowski
Software Mentions: 4
Published: about 3 years ago
10.1371/journal.pgen.1008518
Sex biased expression and co-expression networks in development, using the hymenopteran Nasonia vitripennisCited by: 10
Author(s): Alfredo Rago, John H. Werren, John K. Colbourne
Software Mentions: 4
Published: almost 5 years ago
10.1371/journal.pone.0026605
Leaders Are More Attractive: Birds with Bigger Yellow Breast Patches Are Followed by More Group-Mates in Foraging GroupsCited by: 20
Author(s): Zoltán Tóth, Matteo Griggio
Software Mentions: 4
Published: about 13 years ago
10.1371/journal.pone.0084642
Predicting the Vulnerability of Great Apes to Disease: The Role of Superspreaders and Their Potential VaccinationCited by: 19
Author(s): Charlotte Carne, Stuart Semple, Helen C. Morrogh‐Bernard, Klaus Zuberbühler, Julia Lehmann
Software Mentions: 4
Published: almost 11 years ago
10.1371/journal.pone.0245409
Social survival: Humpback whales (Megaptera novaeangliae) use social structure to partition ecological niches within proposed critical habitatCited by: 3
Author(s): Janie Wray, Eric M. Keen, Éadin O’Mahony
Software Mentions: 4
Published: over 3 years ago
10.1371/journal.pone.0235690
Heatmap centrality: A new measure to identify super-spreader nodes in scale-free networksCited by: 10
Author(s): Christina Durón
Software Mentions: 4
Published: over 4 years ago
10.1007/s10393-017-1284-3
Implications of Tourist–Macaque Interactions for Disease TransmissionCited by: 28
Author(s): Charlotte Carne, Stuart Semple, Ann MacLarnon, Bonaventura Majolo, Laëtitia Maréchal
Software Mentions: 4
Published: almost 7 years ago
10.3389/fnhum.2020.00255
Aerobic Exercise Induces Functional and Structural Reorganization of CNS Networks in Multiple Sclerosis: A Randomized Controlled TrialCited by: 9
Author(s): Jan‐Patrick Stellmann, Adil Maarouf, Schulz Kh, Lisa Baquet, Jana Pöttgen, Stefan Patra, Iris Katharina Penner, Susanne Gellißen, Gesche Ketels, Pierre Besson, Jean Philippe Ranjeva, Maxime Guye, Guido Nolte, Andreas K. Engel, Bertrand Audoin, Christoph Heesen, Stefan M. Gold
Software Mentions: 4
Published: over 4 years ago
10.1038/s41598-019-54206-x
Ecological networks: Pursuing the shortest path, however narrow and crookedCited by: 12
Author(s): Andrea Costa, Ana M. Martín González, Katell Guizien, Andrea M. Doglioli, José M. Gómez, Anne Petrenko, Stefano Allesina
Software Mentions: 4
Published: almost 5 years ago
10.3390/ijerph18094836
Categorizing IQOS-Related Twitter DiscussionsCited by: 5
Author(s): Joshua Barker, Julia Vassey, Julia Chen-Sankey, Jon-Patrick Allem, Tess Boley Cruz, Jennifer B. Unger
Software Mentions: 4
Published: over 3 years ago
10.3390/insects11120872
Network Centrality as an Indicator for Pollinator Parasite Transmission via FlowersCited by: 13
Author(s): Niels Piot, Guy Smagghe, Ivan Meeus
Software Mentions: 3
Published: almost 4 years ago
10.1186/s12859-016-1219-y
Dissecting the biological relationship between TCGA miRNA and mRNA sequencing data using MMiRNA-ViewerCited by: 9
Author(s): Yongsheng Bai, Lizhong Ding, Steve Baker, Jenny M. Bai, Ethan Rath, Feng Jiang, Jianghong Wu, Hui Jiang, Gary W. Stuart
Software Mentions: 3
Published: about 8 years ago
10.7554/eLife.01074
The antigenic switching network of Plasmodium falciparum and its implications for the immuno-epidemiology of malariaCited by: 26
Author(s): Robert Noble, Zóe Christodoulou, Sue Kyes, Robert Pinches, Chris Newbold, Mario Recker
Software Mentions: 2
Published: about 11 years ago
10.1038/s41598-017-00929-8
The effect of social connections on the discovery of multiple hidden food patches in a bird speciesCited by: 22
Author(s): Zoltán Tóth, Beniamino Tuliozi, Davide Baldan, Herbert Hoi, Matteo Griggio
Software Mentions: 2
Published: over 7 years ago
10.1371/journal.pone.0095039
The Risk of Disease to Great Apes: Simulating Disease Spread in Orang-Utan (Pongo pygmaeus wurmbii) and Chimpanzee (Pan troglodytes schweinfurthii) Association NetworksCited by: 23
Author(s): Charlotte Carne, Stuart Semple, Helen C. Morrogh‐Bernard, Klaus Zuberbühler, Julia Lehmann
Software Mentions: 2
Published: over 10 years ago
10.1371/journal.pcbi.1004466
Structural Bridges through Fold SpaceCited by: 15
Author(s): Hannah Edwards, Charlotte M. Deane
Software Mentions: 2
Published: about 9 years ago
10.1371/journal.pone.0053199
The Problem of Thresholding in Small-World Network AnalysisCited by: 101
Author(s): Nicolas Langer, Andreas Pedroni, Lutz Jäncke
Software Mentions: 2
Published: almost 12 years ago