cran: TreePar | Projects | Ecosyste.ms: Papers

10.1038/srep26340

Phylogenetic niche conservatism explains an inverse latitudinal diversity gradient in freshwater arthropods
Cited by: 41
Author(s): Jérôme Morinière, Matthew H. Van Dam, Oliver Hawlitschek, Johannes Bergsten, Mariano C. Michat, Lars Hendrich, Ignacio Ribera, Emmanuel F. A. Toussaint, Michael Balke
Software Mentions: 12
Published: over 8 years ago

10.1016/j.epidem.2014.04.003

OutbreakTools: A new platform for disease outbreak analysis using the R software
Cited by: 37
Author(s): Thibaut Jombart, David M. Aanensen, Marc Baguelin, Paul Birrell, Simon Cauchemez, Anton Camacho, Caroline Colijn, Caitlin Collins, Anne Cori, Xavier Didelot, Christophe Fraser, Simon D. W. Frost, Niel Hens, Joseph Hugues, Michael Höhle, Lulla Opatowski, Andrew Rambaut, Oliver Ratmann, Samuel Soubeyrand, Marc A. Suchard, Jacco Wallinga, Rolf J. F. Ypma, Neil M. Ferguson
Software Mentions: 11
Published: over 10 years ago

10.1186/s12862-015-0440-z

The influence of ecological and geographical context in the radiation of Neotropical sigmodontine rodents
Cited by: 48
Author(s): Andrés Parada, Guillermo D’Elı́a, R. Eduardo Palma
Software Mentions: 9
Published: about 9 years ago

10.1111/evo.12483

SEXUAL SPECIES ARE SEPARATED BY LARGER GENETIC GAPS THAN ASEXUAL SPECIES IN ROTIFERS
Cited by: 34
Author(s): Cuong Q. Tang, Ulrike Obertegger, Diego Fontaneto, Timothy G. Barraclough
Software Mentions: 8
Published: over 10 years ago

10.1371/journal.pone.0095040

Evolutionary Dynamics in the Southwest Indian Ocean Marine Biodiversity Hotspot: A Perspective from the Rocky Shore Gastropod Genus Nerita
Cited by: 15
Author(s): Bautisse Postaire, J. Henrich Bruggemann, Hélène Magalon, Baptiste Faure
Software Mentions: 6
Published: over 10 years ago

10.1186/s12862-016-0758-1

Molecular phylogeny and timing of diversification in Alpine Rhithrogena (Ephemeroptera: Heptageniidae)
Cited by: 15
Author(s): Laurent Vuataz, Sereina Rutschmann, Michael T. Monaghan, Michel Sartori
Software Mentions: 5
Published: about 8 years ago

10.1186/s12862-015-0289-1

Higher speciation and lower extinction rates influence mammal diversity gradients in Asia
Cited by: 17
Author(s): Krishnapriya Tamma, Uma Ramakrishnan
Software Mentions: 4
Published: almost 10 years ago

10.1371/journal.pone.0178389

Insight into Central Asian flora from the Cenozoic Tianshan montane origin and radiation of Lagochilus (Lamiaceae)
Cited by: 8
Author(s): Mingli Zhang, Xiao-Qing Zeng, Stewart C. Sanderson, V. V. Byalt, Alexander P. Sukhorukov
Software Mentions: 3
Published: about 7 years ago

10.1186/s12862-020-01628-1

Mid-Cenozoic climate change, extinction, and faunal turnover in Madagascar, and their bearing on the evolution of lemurs
Cited by: 14
Author(s): Laurie R. Godfrey, Karen E. Samonds, Justin W. Baldwin, Michael R. Sutherland, Jason M. Kamilar, Kristen L. Allfisher
Software Mentions: 3
Published: over 4 years ago

10.1186/1741-7007-10-12

Updating the evolutionary history of Carnivora (Mammalia): a new species-level supertree complete with divergence time estimates
Cited by: 341
Author(s): Katrin Nyakatura, Olaf R. P. Bininda‐Emonds
Software Mentions: 2
Published: over 12 years ago

10.1186/s12862-014-0210-3

The strange case of East African annual fishes: aridification correlates with diversification for a savannah aquatic group?
Cited by: 47
Author(s): Alexander Dorn, Zuzana Musilová, Matthias Platzer, Kathrin Reichwald, Alessandro Cellerino
Software Mentions: 2
Published: about 10 years ago

10.1186/s12862-015-0432-z

Detecting patterns of species diversification in the presence of both rate shifts and mass extinctions
Cited by: 14
Author(s): Sacha Laurent, Marc Robinson‐Rechavi, Nicolas Salamin
Software Mentions: 2
Published: over 9 years ago

10.1186/s12862-018-1277-z

Insights into the historical assembly of global dryland floras: the diversification of Zygophyllaceae
Cited by: 18
Author(s): Songjie Wu, Linjing Zhang, Lin Li, Sheng‐Xiang Yu, Zhiduan Chen, Wei Wang
Software Mentions: 2
Published: about 6 years ago

10.1186/s12862-018-1210-5

Inferring demographic parameters in bacterial genomic data using Bayesian and hybrid phylogenetic methods
Cited by: 16
Author(s): Sebastián Duchêne, David A. Duchêne, Jemma L. Geoghegan, Zoe A. Dyson, Jane Hawkey, Kathryn E. Holt
Software Mentions: 2
Published: over 6 years ago

10.1098/rsbl.2016.0273

Estimating shifts in diversification rates based on higher-level phylogenies
Cited by: 7
Author(s): Tanja Stadler, Smrckova Jana
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pcbi.1003913

Inference of Epidemiological Dynamics Based on Simulated Phylogenies Using Birth-Death and Coalescent Models
Cited by: 56
Author(s): Veronika Bošková, Sebastian Bonhoeffer, Tanja Stadler
Software Mentions: 2
Published: about 10 years ago

10.1371/currents.outbreaks.02bc6d927ecee7bbd33532ec8ba6a25f

Insights into the Early Epidemic Spread of Ebola in Sierra Leone Provided by Viral Sequence Data
Cited by: 68
Author(s): Tanja Stadler, Denise Kühnert, David A. Rasmussen, Louis du Plessis
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0176384

No evidence for the radiation time lag model after whole genome duplications in Teleostei
Cited by: 11
Author(s): Sacha Laurent, Nicolas Salamin, Marc Robinson‐Rechavi
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0138697

Evolution of Asian Interior Arid-Zone Biota: Evidence from the Diversification of Asian Zygophyllum (Zygophyllaceae)
Cited by: 21
Author(s): Songjie Wu, Lin Li, Honglei Li, Sheng‐Xiang Yu, Linjing Zhang, Wei Wang
Software Mentions: 2
Published: about 9 years ago

10.1111/evo.13593

History is written by the victors: The effect of the push of the past on the fossil record
Cited by: 54
Author(s): Graham E. Budd, Richard P. Mann
Software Mentions: 2
Published: about 6 years ago

10.3389/fgene.2018.00698

Morphological Innovations and Vast Extensions of Mountain Habitats Triggered Rapid Diversification Within the Species-Rich Irano-Turanian Genus Acantholimon (Plumbaginaceae)
Cited by: 18
Author(s): Farideh Moharrek, Isabel Sanmartín, Shahrokh Kazempour Osaloo, Gonzalo Nieto Feliner
Software Mentions: 2
Published: almost 6 years ago

10.1038/srep19208

Global patterns of insect diversification: towards a reconciliation of fossil and molecular evidence?
Cited by: 101
Author(s): Fabien L. Condamine, Matthew E. Clapham, Gaël J. Kergoat
Software Mentions: 2
Published: almost 9 years ago

10.1038/srep27259

The rise of angiosperm-dominated herbaceous floras: Insights from Ranunculaceae
Cited by: 40
Author(s): Wei Wang, Lin Li, Xiao‐Guo Xiang, Rosa Del C. Ortiz, Yang Liu, Kunli Xiang, Sheng‐Xiang Yu, Yao‐Wu Xing, Zhi Chen
Software Mentions: 1
Published: over 8 years ago

10.1186/s12862-015-0459-1

Range expansion and habitat shift triggered elevated diversification of the rice genus (Oryza, Poaceae) during the Pleistocene
Cited by: 2
Author(s): Lin Li, Liang Tang, Yunjun Bai, Zhiyao Tang, Wei Wang, Zhi Chen
Software Mentions: 1
Published: about 9 years ago

10.1186/1471-2148-14-118

The explosive radiation of Cheirolophus (Asteraceae, Cardueae) in Macaronesia
Cited by: 45
Author(s): Daniel Vitales, Teresa Garnatje, Jaume Pellicer, Joan Vallès, Arnoldo Santos‐Guerra, Isabel Sanmartín
Software Mentions: 1
Published: almost 11 years ago

10.3389/fgene.2016.00035

Extinction in Phylogenetics and Biogeography: From Timetrees to Patterns of Biotic Assemblage
Cited by: 53
Author(s): Isabel Sanmartín, Andrea S. Meseguer
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pcbi.1007999

Locally adaptive Bayesian birth-death model successfully detects slow and rapid rate shifts
Cited by: 24
Author(s): Andrew F. Magee, Sebastian Höhna, Tetyana I. Vasylyeva, Adam D. Leaché, Vladimir N. Minin
Software Mentions: 1
Published: about 4 years ago

10.1098/rspb.2017.0095

Dry habitats were crucibles of domestication in the evolution of agriculture in ants
Cited by: 122
Author(s): Michael G. Branstetter, Ana Ješovnik, Jeffrey Sosa‐Calvo, Michael W. Lloyd, Brant C. Faircloth, Seán G. Brady, Ted R. Schultz
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0049521

Macroevolutionary Dynamics and Historical Biogeography of Primate Diversification Inferred from a Species Supermatrix
Cited by: 460
Author(s): Mark S. Springer, Robert W. Meredith, John Gatesy, Christopher A. Emerling, Jong Hwan Park, Daniel L. Rabosky, Tanja Stadler, Cynthia Steiner, Oliver A. Ryder, Jan E. Janečka, Colleen A. Fisher, William J. Murphy
Software Mentions: 1
Published: about 12 years ago

10.1038/srep16016

Mosaic patterns of diversification dynamics following the colonization of Melanesian islands
Cited by: 30
Author(s): Emmanuel F. A. Toussaint, Lars Hendrich, Helena Shaverdo, Michael Balke
Software Mentions: 1
Published: about 9 years ago

10.1186/s12862-014-0220-1

Cretaceous environmental changes led to high extinction rates in a hyperdiverse beetle family
Cited by: 48
Author(s): Gaël J. Kergoat, Patrice Bouchard, Anne Laure Clamens, Jessica Lee Abbate, Hervé Jourdan, Roula Jabbour‐Zahab, Guénaëlle Genson, Laurent Soldati, Fabien L. Condamine
Software Mentions: 1
Published: about 10 years ago

Ecosyste.ms: Papers

Projects: cran: TreePar

Papers Mentioning TreePar 31