cran: GFA | Projects | Ecosyste.ms: Papers

10.1186/s13742-015-0077-2

Visualizing genome and systems biology: technologies, tools, implementation techniques and trends, past, present and future
Cited by: 83
Author(s): Georgios A. Pavlopoulos, Dimitris Malliarakis, Nikolas Papanikolaou, Θεοδόσιος Θεοδοσίου, Anton J. Enright, Ioannis Iliopoulos
Software Mentions: 7
Published: over 9 years ago

10.1093/gigascience/giaa064

Integrative computational epigenomics to build data-driven gene regulation hypotheses
Cited by: 10
Author(s): Tyrone Chen, Sonika Tyagi
Software Mentions: 6
Published: over 4 years ago

10.1186/1748-7188-5-32

Gravitation field algorithm and its application in gene cluster
Cited by: 24
Author(s): Ming Zheng, Guixia Liu, Chunguang Zhou, Yanchun Liang, Yan Wang
Software Mentions: 5
Published: over 14 years ago

10.1186/s12864-016-3306-x

Differences in the skeletal muscle transcriptome profile associated with extreme values of fatty acids content
Cited by: 40
Author(s): Aline Silva Mello Cesar, Luciana Correia de Almeida Regitano, Mirele Daiana Poleti, Sónia C. S. Andrade, P. C. Tizioto, P. S. N. Oliveira, Andrezza Maria Felício, Michele Lopes do Nascimento, Amália Saturnino Chaves, Dante Pazzanese Duarte Lanna, R. R. Túllio, R. T. Nassu, James E. Koltes, Eric R. Fritz-Waters, Gérson Barreto Mourão, Adhemar Zerlotini-Neto, James M. Reecy, Luiz Lehmann Coutinho
Software Mentions: 4
Published: about 8 years ago

10.12688/f1000research.20233.1

A Sequence Distance Graph framework for genome assembly and analysis
Cited by: 3
Author(s): Luis Yanes, Gonzalo Garcia Accinelli, Jonathan Wright, Ben J. Ward, Bernardo Clavijo
Software Mentions: 4
Published: over 5 years ago

10.1186/s12859-017-1820-8

An effective approach to detecting both small and large complexes from protein-protein interaction networks
Cited by: 18
Author(s): Bin Xu, Yan Wang, Zewei Wang, Jiaogen Zhou, Shuigeng Zhou, Jihong Guan
Software Mentions: 4
Published: about 7 years ago

10.7717/peerj.2681

RGFA: powerful and convenient handling of assembly graphs
Cited by: 5
Author(s): Giorgio Gonnella, Stefan Kurtz
Software Mentions: 4
Published: about 8 years ago

10.1016/j.heliyon.2019.e02640

QSAR analysis and molecular docking simulation of norepinephrine transporter (NET) inhibitors as anti-psychotic therapeutic agents
Cited by: 13
Author(s): Sabitu Babatunde Olasupo, Adamu Uzairu, Gideon Adamu Shallangwa, Gideon Adamu Shallangwa
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0033728

In Silico Investigation of Potential Src Kinase Ligands from Traditional Chinese Medicine
Cited by: 21
Author(s): Weng Ieong Tou, Calvin Yu-Chian Chen
Software Mentions: 3
Published: almost 13 years ago

10.1186/s12859-021-04174-9

SAUTE: sequence assembly using target enrichment
Cited by: 8
Author(s): Alexandre Souvorov, Richa Agarwala
Software Mentions: 3
Published: over 3 years ago

10.1186/1756-0500-4-549

Which clustering algorithm is better for predicting protein complexes?
Cited by: 26
Author(s): Charalampos Moschopoulos, Georgios A. Pavlopoulos, Ernesto Iacucci, Jan Aerts, Spiridon D. Likothanassis, Reinhard Schneider, Σοφία Κοσσίδα
Software Mentions: 3
Published: about 13 years ago

10.1242/dmm.021105

From drug response profiling to target addiction scoring in cancer cell models
Cited by: 12
Author(s): Bhagwan Yadav, Peddinti Gopalacharyulu, Tea Pemovska, Suleiman A. Khan, Agnieszka Szwajda, Jing Tang, Krister Wennerberg, Tero Aittokallio
Software Mentions: 3
Published: about 9 years ago

10.12688/f1000research.19630.2

A strategy for building and using a human reference pangenome
Cited by: 5
Author(s): Bastien Llamas, Giuseppe Narzisi, Valérie Schneider, Peter A. Audano, Evan Biederstedt, Lon Blauvelt, Peter J. Bradbury, Xian Chang, Chen-Shan Chin, Arkarachai Fungtammasan, Wayne E. Clarke, Alan Cleary, Jana Ebler, Jordan Eizenga, Jonas Andreas Sibbesen, Charles Markello, Erik Garrison, Shilpa Garg, Glenn Hickey, Gerard R. Lazo, Michael Lin, Medhat Mahmoud, Tobias Marschall, Ilia Minkin, Jean Monlong, Rajeeva Musunuri, Sagayamary Sagayaradj, Adam M. Novak, Mikko Rautiainen, Allison Regier, Fritz J. Sedlazeck, Jouni Sirén, Yassine Souilmi, Justin Wagner, Travis Wrightsman, Toshiyuki Yokoyama, Qiandong Zeng, Justin M. Zook, Benedict Paten, Ben Busby
Software Mentions: 3
Published: over 3 years ago

10.15252/msb.20178124

Multi‐Omics Factor Analysis—a framework for unsupervised integration of multi‐omics data sets
Cited by: 571
Author(s): Ricard Argelaguet, Britta Velten, Damien Arnol, Sascha Dietrich, Thorsten Zenz, John C. Marioni, Florian Buettner, Wolfgang Huber, Oliver Stegle
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0174897

Isotopic ecology of coyotes from scat and road kill carcasses: A complementary approach to feeding experiments
Cited by: 16
Author(s): Rachel E. B. Reid, Paul L. Koch
Software Mentions: 2
Published: over 7 years ago

10.1186/s12889-020-09894-w

Screen media activity does not displace other recreational activities among 9–10 year-old youth: a cross-sectional ABCD study®
Cited by: 7
Author(s): Briana Lees, Lindsay M. Squeglia, Florence J. Breslin, Wesley K. Thompson, Susan F. Tapert, Martin P. Paulus
Software Mentions: 2
Published: about 4 years ago

10.1093/bioinformatics/btab281

Constructing small genome graphs via string compression
Cited by: 2
Author(s): Yutong Qiu, Carl Kingsford
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0049039

Improved Gravitation Field Algorithm and Its Application in Hierarchical Clustering
Cited by: 10
Author(s): Ming Zheng, Ying Sun, Guixia Liu, You Zhou, Chunguang Zhou
Software Mentions: 2
Published: about 12 years ago

10.1098/rsos.200872

An integrative machine learning approach to discovering multi-level molecular mechanisms of obesity using data from monozygotic twin pairs
Cited by: 3
Author(s): Milla Kibble, Suleiman A. Khan, Muhammad Ammad-ud-din, Sailalitha Bollepalli, Teemu Palviainen, Jaakko Kaprio, Kirsi H. Pietiläinen, Miina Ollikainen
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pone.0043932

In Silico Identification of Potent Pancreatic Triacylglycerol Lipase Inhibitors from Traditional Chinese Medicine
Cited by: 17
Author(s): Kuan‐Yu Chen, Su-Sen Chang, Calvin Yu-Chian Chen
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0119575

Quantitative Structure-Property Relationship (QSPR) Modeling of Drug-Loaded Polymeric Micelles via Genetic Function Approximation
Cited by: 29
Author(s): Wensheng Wu, Can Yang Zhang, Wenjing Lin, Quan Chen, Xiaoxiao Guo, Yu Qian, Lijuan Zhang
Software Mentions: 1
Published: almost 10 years ago

10.1155/2014/364819

Ligand-Based and Structure-Based Investigation for Alzheimer’s Disease from Traditional Chinese Medicine
Cited by: 26
Author(s): Kai Liao, Kuen‐Bao Chen, Wen‐Yuan Lee, Mao-Feng Sun, Cheng-Chun Lee, Calvin Yu-Chian Chen
Software Mentions: 1
Published: almost 11 years ago

10.3390/molecules14051660

On Two Novel Parameters for Validation of Predictive QSAR Models
Cited by: 450
Author(s): Partha Pratim Roy, Somnath Paul, Indrajit Mitra, Kunal Roy
Software Mentions: 1
Published: over 15 years ago

10.3390/molecules14041448

QSAR Studies on N-aryl Derivative Activity Towards Alzheimer’s Disease
Cited by: 23
Author(s): Kamalakaran Anand Solomon, Sundararajan Srinivasan, Veluchamy Abirami
Software Mentions: 1
Published: over 15 years ago

10.3389/fpsyt.2019.01019

White Matter Microstructure in Adolescents and Young Adults With Non-Suicidal Self-Injury
Cited by: 13
Author(s): Melinda Westlund Schreiner, Bryon A. Mueller, Bonnie Klimes‐Dougan, Erin Begnel, Mark Fiecas, Dawson Hill, Kelvin O. Lim, Kathryn R. Cullen
Software Mentions: 1
Published: almost 5 years ago

10.3390/mps4010002

Predictive Quantitative Structure–Activity Relationship Modeling of the Antifungal and Antibiotic Properties of Triazolothiadiazine Compounds
Cited by: 1
Author(s): Michael Appell, David L. Compton, Kervin O. Evans
Software Mentions: 1
Published: almost 4 years ago

10.1186/1476-511X-11-124

QSAR study and the hydrolysis activity prediction of three alkaline lipases from different lipase-producing microorganisms
Cited by: 4
Author(s): Haikuan Wang, Xiaojie Wang, Xiaolu Li, Zhang Yehong, Yujie Dai, Chunsheng Guo, Heng Zheng
Software Mentions: 1
Published: about 12 years ago

10.1186/1471-2105-15-113

Probabilistic drug connectivity mapping
Cited by: 26
Author(s): Juuso Parkkinen, Samuel Kaski
Software Mentions: 1
Published: over 10 years ago

10.3390/ijms22189793

Structural Dynamics of C2F4I2 in Cyclohexane Studied via Time-Resolved X-ray Liquidography
Cited by: 4
Author(s): Jain Gu, Seonggon Lee, Seunghwan Eom, Hosung Ki, Eun Hyuk Choi, Yunbeom Lee, Shiro Nozawa, Shin‐ichi Adachi, Jeongho Kim, Hyotcherl Ihee
Software Mentions: 1
Published: over 3 years ago

Ecosyste.ms: Papers

Projects: cran: GFA

Papers Mentioning GFA 34