Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: DataGraph

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/DataGraph

Export Data from 'R' to 'DataGraph'
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Papers Mentioning DataGraph 32

10.1038/s41598-020-69273-8
Anti-biofilm efficacy of a medieval treatment for bacterial infection requires the combination of multiple ingredients
Cited by: 15
Author(s): Jessica Furner-Pardoe, Blessing O. Anonye, Ricky Cain, John Moat, Catharine A. Ortori, Christina Lee, David A. Barrett, Christophe Corre, Freya Harrison
Software Mentions: 7
Published: over 4 years ago
10.7554/eLife.08384
Signal transducer and activator of transcription 5 (STAT5) paralog dose governs T cell effector and regulatory functions
Cited by: 69
Author(s): Alejandro V. Villarino, Gertraud W. Robinson, Michael Bonelli, Bárbara Dema, Behdad Afzali, Han-Yu Shih, Hongwei Sun, Stephen R. Brooks, Lothar Hennighausen, Yuka Kanno, John J. O’Shea
Software Mentions: 4
Published: over 8 years ago
10.3390/pathogens10091128
pH-Dependent Structural Dynamics of Cathepsin D-Family Aspartic Peptidase of Clonorchis sinensis
Cited by: 1
Author(s): Jung‐Mi Kang, Hương Giang Lê, Byoung-Kuk Na, Won Gi Yoo
Software Mentions: 4
Published: about 3 years ago
10.1084/jem.20150907
Subset- and tissue-defined STAT5 thresholds control homeostasis and function of innate lymphoid cells
Cited by: 76
Author(s): Alejandro V. Villarino, Giuseppe Sciumè, Fred P. Davis, S. Iwata, Beatrice Zitti, Gertraud W. Robinson, Lothar Hennighausen, Yuka Kanno, John J. O’Shea
Software Mentions: 4
Published: about 7 years ago
10.7554/eLife.20851
Age-dependent diastolic heart failure in an in vivo Drosophila model
Cited by: 32
Author(s): Matthew P. Klassen, Christian J. Peters, Shiwei Zhou, Hannah H Williams, Yuh Nung Jan
Software Mentions: 3
Published: over 7 years ago
10.1371/journal.pbio.1002200
The Orphan Nuclear Receptor TLX Is an Enhancer of STAT1-Mediated Transcription and Immunity to Toxoplasma gondii
Cited by: 22
Author(s): Daniel P. Beiting, Shinya Hidano, Julie E. Baggs, Jeanne M. Geskes, Qun Fang, E. John Wherry, Christopher A. Hunter, David S. Roos, Sara Cherry
Software Mentions: 2
Published: over 9 years ago
10.1038/s41598-020-64063-8
Advances in biocultural geography of olive tree (Olea europaea L.) landscapes by merging biological and historical assays
Cited by: 7
Author(s): Giuseppe Russo, Isacco Beritognolo, Marina Bufacchi, Vitale Stanzione, Andrea Pisanelli, Marco Ciolfi, Marco Lauteri, Stephen B. Brush
Software Mentions: 2
Published: over 4 years ago
10.3389/fnins.2019.00143
Cx43-Associated Secretome and Interactome Reveal Synergistic Mechanisms for Glioma Migration and MMP3 Activation
Cited by: 9
Author(s): Qurratulain Aftab, Marc Mesnil, Emmanuel Ojefua, Alisha Poole, Jenna Noordenbos, Pierre‐Olivier Strale, Chris Sitko, Caitlin Le, Nikolay Stoynov, Leonard J. Foster, Wun-Chey Sin, Christian C. Naus, Vincent C. Chen
Software Mentions: 2
Published: over 5 years ago
10.1038/s41598-020-75692-4
How Joannites’ economy eradicated primeval forest and created anthroecosystems in medieval Central Europe
Cited by: 9
Author(s): Mariusz Lamentowicz, Katarzyna Marcisz, Piotr Guzowski, Mariusz Gałka, Andrei‐Cosmin Diaconu, Piotr Kołaczek
Software Mentions: 2
Published: about 4 years ago
10.7717/peerj.67
Whose name is it anyway? Varying patterns of possessive usage in eponymous neurodegenerative diseases
Cited by: 13
Author(s): Michael R. MacAskill, Tim Anderson
Software Mentions: 2
Published: over 11 years ago
10.1371/journal.pone.0236153
Does mathematics training lead to better logical thinking and reasoning? A cross-sectional assessment from students to professors
Cited by: 14
Author(s): Clio Cresswell, Craig Speelman
Software Mentions: 2
Published: over 4 years ago
10.1371/journal.pone.0016659
HIV-1 Nef Protein Structures Associated with Brain Infection and Dementia Pathogenesis
Cited by: 30
Author(s): Susanna L. Lamers, Art F. Y. Poon, Michael S. McGrath
Software Mentions: 2
Published: almost 14 years ago
10.1371/journal.pone.0088398
Differential Induction of TLR3-Dependent Innate Immune Signaling by Closely Related Parasite Species
Cited by: 56
Author(s): Daniel P. Beiting, Lucı́a Peixoto, Natalia S. Akopyants, Stephen M. Beverley, E. John Wherry, David A. Christian, Christopher A. Hunter, Igor E. Brodsky, David S. Roos
Software Mentions: 2
Published: almost 11 years ago
10.3389/frma.2021.643533
Dimensional Taxonomy of Data Visualization: A Proposal From Communication Sciences Tackling Complexity
Cited by: 3
Author(s): Víctor Cavaller
Software Mentions: 2
Published: over 3 years ago
10.1038/srep29950
AP-1/σ1A and AP-1/σ1B adaptor-proteins differentially regulate neuronal early endosome maturation via the Rab5/Vps34-pathway
Cited by: 16
Author(s): Ermes Candiello, Manuel Kratzke, Dirk Wenzel, Dan Cassel, Peter Schu
Software Mentions: 1
Published: over 8 years ago
10.1038/s41598-017-16055-4
Differential regulation of synaptic AP-2/clathrin vesicle uncoating in synaptic plasticity
Cited by: 4
Author(s): Ermes Candiello, Ratnakar Mishra, Bernhard Schmidt, Olaf Jahn, Peter Schu
Software Mentions: 1
Published: about 7 years ago
10.1038/s41598-021-84248-z
A comparative two-cohort study of pediatric patients with long term stay in ICUs
Cited by: 5
Author(s): Julia García Mancebo, Sara de la Mata Navazo, Estíbaliz López-Herce Arteta, Rosario Montero Mateo, Isabel María López Esteban, Adriana Mazzuchelli Domínguez, María Sánchez Doutel, J. López-Herce Cid, Rafael González Cortés
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-021-87591-3
Synaptic AP2 CCV life cycle regulation by the Eps15, ITSN1, Sgip1/AP2, synaptojanin1 interactome
Cited by: 4
Author(s): Ratnakar Mishra, Göksemin Fatma Şengül, Ermes Candiello, Peter Schu
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pone.0021347
Mitochondrial Oxidative Phosphorylation Compensation May Preserve Vision in Patients with OPA1-Linked Autosomal Dominant Optic Atrophy
Cited by: 47
Author(s): Nicole J Van Bergen, Jonathan G Crowston, Lisa S. Kearns, Sandra E Staffieri, Alex W. Hewitt, Amy C Cohn, David A. Mackey, Ian A. Trounce
Software Mentions: 1
Published: over 13 years ago
10.1128/AEM.01922-19
Prophages in Lactobacillus reuteri Are Associated with Fitness Trade-Offs but Can Increase Competitiveness in the Gut Ecosystem
Cited by: 33
Author(s): Jee-Hwan Oh, Xiaoxi B. Lin, Shenwei Zhang, Stephanie Tollenaar, Mustafa Özçam, Case Dunphy, Jens Walter, Jan Peter van Pijkeren
Software Mentions: 1
Published: almost 5 years ago
10.1093/bjsopen/zrab021
Causes of death after emergency general surgical admission: population cohort study of mortality
Cited by: 5
Author(s): George Ramsay, Jared M Wohlgemut, Mohamed Bekheit, Angus Watson, J. O. Jansen
Software Mentions: 1
Published: over 3 years ago
10.1111/mmi.12014
Structure of <scp>WbdD</scp> : a bifunctional kinase and methyltransferase that regulates the chain length of the <scp>O</scp> antigen in <i> <scp>E</scp> scherichia coli </i> <scp>O9a</scp>
Cited by: 27
Author(s): Gregor Hagelueken, Hexian Huang, Bradley R. Clarke, Tomáš Lébl, Chris Whitfield, James H. Naismith
Software Mentions: 1
Published: about 12 years ago
10.3390/v13081621
Polydnavirus Innexins Disrupt Host Cellular Encapsulation and Larval Maturation
Cited by: 3
Author(s): Peng Zhang, Matthew W. Turnbull
Software Mentions: 1
Published: over 3 years ago
10.1186/s13071-020-3882-0
Clonorchis sinensis MF6p/HDM (CsMF6p/HDM) induces pro-inflammatory immune response in RAW 264.7 macrophage cells via NF-κB-dependent MAPK pathways
Cited by: 11
Author(s): Jung‐Mi Kang, Won Gi Yoo, Hương Giang Lê, Jin Young Lee, Woon-Mok Sohn, Byoung-Kuk Na
Software Mentions: 1
Published: almost 5 years ago
10.7717/peerj.1516
Differential scanning calorimetry of whole<i>Escherichia coli</i>treated with the antimicrobial peptide MSI-78 indicate a multi-hit mechanism with ribosomes as a novel target
Cited by: 18
Author(s): Alexander M. Brannan, William A. Whelan, Emma Cole, Valerie Booth
Software Mentions: 1
Published: almost 9 years ago
10.1371/journal.pntd.0002627
Repeated Exposure to Lutzomyia intermedia Sand Fly Saliva Induces Local Expression of Interferon-Inducible Genes Both at the Site of Injection in Mice and in Human Blood
Cited by: 15
Author(s): Tiffany Weinkopff, Camila I. de Oliveira, Augusto M. Carvalho, Yazmin Hauyon-La Torre, Aline C. Muniz, José Carlos Miranda, Aldina Barral, Fabienne Tacchini‐Cottier
Software Mentions: 1
Published: almost 11 years ago
10.1371/journal.pone.0039382
Glutamate Induces Mitochondrial Dynamic Imbalance and Autophagy Activation: Preventive Effects of Selenium
Cited by: 105
Author(s): Santosh Kumari, Suresh L. Mehta, P. Andy Li
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0047910
Selenite Stimulates Mitochondrial Biogenesis Signaling and Enhances Mitochondrial Functional Performance in Murine Hippocampal Neuronal Cells
Cited by: 40
Author(s): Natalia Mendelev, Suresh L. Mehta, Haza Idris, Santosh Kumari, P. Andy Li
Software Mentions: 1
Published: about 12 years ago
10.1128/AEM.02335-18
Exploiting Prophage-Mediated Lysis for Biotherapeutic Release by <i>Lactobacillus reuteri</i>
Cited by: 13
Author(s): Laura M. Alexander, Jee-Hwan Oh, Donald S. Stapleton, Kathryn L. Schueler, Mark P. Keller, Alan D. Attie, Jan-Peter van Pijkeren
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0131660
Trends in Stranding and By-Catch Rates of Gray and Harbor Seals along the Northeastern Coast of the United States: Evidence of Divergence in the Abundance of Two Sympatric Phocid Species?
Cited by: 11
Author(s): David W. Johnston, Jaime Frungillo, Ainsley Smith, Katie Moore, Brian W. Sharp, Janelle Schuh, Andrew J. Read
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0157842
Evidence Suggesting That Francisella tularensis O-Antigen Capsule Contains a Lipid A-Like Molecule That Is Structurally Distinct from the More Abundant Free Lipid A
Cited by: 9
Author(s): Jason Barker, Justin W. Kaufman, Michael A. Apicella, Jerrold Weiss
Software Mentions: 1
Published: over 8 years ago
10.3389/fphys.2017.00280
Role of Intestinal LXRα in Regulating Post-prandial Lipid Excursion and Diet-Induced Hypercholesterolemia and Hepatic Lipid Accumulation
Cited by: 10
Author(s): T. Benítez‐Santana, Sarah E. Hugo, Amnon Schlegel
Software Mentions: 1
Published: over 7 years ago