cran: diversitree | Projects | Ecosyste.ms: Papers

10.1186/s12862-020-01717-1

Climatic and topographic changes since the Miocene influenced the diversification and biogeography of the tent tortoise (Psammobates tentorius) species complex in Southern Africa
Cited by: 7
Author(s): Zhongning Zhao, Neil Heideman, Phillip Armand Bester, Adriaan Jordaan, Margaretha D. Hofmeyr
Software Mentions: 18
Published: about 4 years ago

10.1186/s12862-015-0440-z

The influence of ecological and geographical context in the radiation of Neotropical sigmodontine rodents
Cited by: 48
Author(s): Andrés Parada, Guillermo D’Elı́a, R. Eduardo Palma
Software Mentions: 9
Published: over 9 years ago

10.1093/icb/icw041

Suchian Feeding Success at the Interface of Ontogeny and Macroevolution
Cited by: 33
Author(s): Paul M. Gignac, Haley O’Brien
Software Mentions: 8
Published: over 8 years ago

10.1371/journal.pcbi.1007323

Using text-mined trait data to test for cooperate-and-radiate co-evolution between ants and plants
Cited by: 16
Author(s): Katrina M. Kaur, Pierre‐Jean G. Malé, E. J. Spence, Crisanto Gómez, Megan E. Frederickson
Software Mentions: 6
Published: about 5 years ago

10.1186/s12862-021-01880-z

Radiating pain: venom has contributed to the diversification of the largest radiations of vertebrate and invertebrate animals
Cited by: 3
Author(s): Kevin Arbuckle, Richard J. Harris
Software Mentions: 6
Published: over 3 years ago

10.1371/currents.tol.099161de5eabdee073fd3d21a44518dc

Arbor: Comparative Analysis Workflows for the Tree of Life
Cited by: 14
Author(s): Luke J. Harmon, Jeffrey Baumes, Charles E. Hughes, Jorge Soberón, Chelsea D. Specht, Wesley Turner, Curtis Lisle, Robert Thacker
Software Mentions: 6
Published: almost 12 years ago

10.1186/1471-2164-15-1075

Genomic characterisation of an endometrial pathogenic Escherichia coli strain reveals the acquisition of genetic elements associated with extra-intestinal pathogenicity
Cited by: 14
Author(s): Robert Goldstone, Roman Popat, Hans‐Joachim Schuberth, Olivier Sandra, I. Martin Sheldon, David George Emslie Smith
Software Mentions: 6
Published: about 10 years ago

10.1098/rspb.2020.2438

Investment in chemical signalling glands facilitates the evolution of sociality in lizards
Cited by: 13
Author(s): Simon Baeckens, Martin J. Whiting
Software Mentions: 6
Published: almost 4 years ago

10.1038/s41598-017-16417-y

Different diversity-dependent declines in speciation rate unbalances species richness in terrestrial slugs
Cited by: 6
Author(s): Regina L. Cunha, Cláudia Patrão, Rita Castilho
Software Mentions: 5
Published: about 7 years ago

10.1038/sdata.2014.15

Tree of Sex: A database of sexual systems
Cited by: 199
Author(s): Tia‐Lynn Ashman, Doris Bachtrog, Heath Blackmon, Emma E. Goldberg, Matthew W. Hahn, Mark Kirkpatrick, Jun Kitano, Judith E. Mank, Itay Mayrose, Ray Ming, Sarah P. Otto, Catherine L. Peichel, Matthew W. Pennell, Nicolas Perrin, Laura Ross, Nicole Valenzuela, Jana C. Vamosi
Software Mentions: 5
Published: over 10 years ago

10.3389/fgene.2015.00130

An engine for global plant diversity: highest evolutionary turnover and emigration in the American tropics
Cited by: 76
Author(s): Alexandre Antonelli, Alexander Zizka, Daniele Silvestro, Ruud Scharn, Borja Cascales‐Miñana, Christine D. Bacon
Software Mentions: 4
Published: over 9 years ago

10.1186/1471-2148-11-371

Driving south: a multi-gene phylogeny of the brown algal family Fucaceae reveals relationships and recent drivers of a marine radiation
Cited by: 51
Author(s): Fernando Cánovas, Catarina Mota, Ester A. Serrão, Gareth A. Pearson
Software Mentions: 4
Published: almost 14 years ago

10.1186/s12862-015-0289-1

Higher speciation and lower extinction rates influence mammal diversity gradients in Asia
Cited by: 17
Author(s): Krishnapriya Tamma, Uma Ramakrishnan
Software Mentions: 4
Published: almost 10 years ago

10.1186/s12862-016-0764-3

The biodiversity hotspot as evolutionary hot-bed: spectacular radiation of Erica in the Cape Floristic Region
Cited by: 45
Author(s): Michael D. Pirie, E. G. H. Oliver, A. Mugrabi de Kuppler, Berit Gehrke, Nicholas C Le Maitre, Martha Kandziora, Baoheng Du
Software Mentions: 4
Published: over 8 years ago

10.1111/bij.12701

A cautionary note on the use of Ornstein Uhlenbeck models in macroevolutionary studies
Cited by: 222
Author(s): Natalie Cooper, Gavin H. Thomas, Chris Venditti, Andrew Meade, Robert P. Freckleton
Software Mentions: 4
Published: about 9 years ago

10.1371/journal.pcbi.1005931

Predicting pathogenicity behavior in Escherichia coli population through a state dependent model and TRS profiling
Cited by: 3
Author(s): Krzysztof Bartoszek, Marta Majchrzak, Sebastian Sakowski, Anna B. Kubiak-Szeligowska, Ingemar Kaj, Paweł Parniewski
Software Mentions: 4
Published: almost 7 years ago

10.1186/s12862-019-1492-2

Evolutionary patterns of diadromy in fishes: more than a transitional state between marine and freshwater
Cited by: 13
Author(s): Joel B. Corush
Software Mentions: 4
Published: over 5 years ago

10.1002/aps3.1037

chromploid: An R package for chromosome number evolution across the plant tree of life
Cited by: 19
Author(s): Rosana Zenil‐Ferguson, J. Gordon Burleigh, José Miguel Ponciano
Software Mentions: 4
Published: almost 7 years ago

10.1111/evo.12656

The evolution of parental care in insects: A test of current hypotheses
Cited by: 59
Author(s): James D. J. Gilbert, Andrea Manica
Software Mentions: 4
Published: over 9 years ago

10.1371/journal.pone.0120928

Diversity Dynamics in Nymphalidae Butterflies: Effect of Phylogenetic Uncertainty on Diversification Rate Shift Estimates
Cited by: 11
Author(s): Carlos Peña, Marianne Espeland
Software Mentions: 3
Published: over 9 years ago

10.1038/s41598-020-64647-4

Accuracy of ancestral state reconstruction for non-neutral traits
Cited by: 27
Author(s): Barbara R. Holland, Saan Ketelaar-Jones, Aidan O'Mara, Michael D. Woodhams, Gregory J. Jordan
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0176021

Disentangling geographical, biotic, and abiotic drivers of plant diversity in neotropical Ruellia (Acanthaceae)
Cited by: 16
Author(s): Erin A. Tripp, Yi‐Hsin Erica Tsai
Software Mentions: 3
Published: over 7 years ago

10.1002/ece3.2277

Sex determination, longevity, and the birth and death of reptilian species
Cited by: 40
Author(s): Niv Sabath, Yuval Itescu, Anat Feldman, Shai Meiri, Itay Mayrose, Nicole Valenzuela
Software Mentions: 3
Published: over 8 years ago

10.7717/peerj.3194

Arrival and diversification of mabuyine skinks (Squamata: Scincidae) in the Neotropics based on a fossil-calibrated timetree
Cited by: 10
Author(s): Anieli Guirro Pereira, Carlos G. Schrago
Software Mentions: 3
Published: over 7 years ago

10.1186/s12862-018-1275-1

Variable gene transcription underlies phenotypic convergence of hypoxia tolerance in sculpins
Cited by: 5
Author(s): Milica Mandic, Marina L. Ramon, Aleeza C. Gerstein, Andrew Y. Gracey, Jeffrey G. Richards
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pgen.1009502

Tempo and mode in karyotype evolution revealed by a probabilistic model incorporating both chromosome number and morphology
Cited by: 14
Author(s): Kohta Yoshida, Jun Kitano
Software Mentions: 3
Published: over 3 years ago

10.1155/2014/382453

Diversification in Monkeyflowers: An Investigation of the Effects of Elevation and Floral Color in the Genus <i>Mimulus</i>
Cited by: 3
Author(s): Ezgi Ogutcen, Brooklyn Hamper, Jana C. Vamosi
Software Mentions: 2
Published: almost 11 years ago

10.1186/s12862-018-1174-5

Binary-state speciation and extinction method is conditionally robust to realistic violations of its assumptions
Cited by: 7
Author(s): Andrew Simpson, Peter J. Wagner, Scott L. Wing, Charles B. Fenster
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pbio.1001775

Faster Speciation and Reduced Extinction in the Tropics Contribute to the Mammalian Latitudinal Diversity Gradient
Cited by: 280
Author(s): Jonathan Rolland, Fabien L. Condamine, Frédéric Jiguet, Hélène Morlon
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0039377

Contrasting Biogeographic and Diversification Patterns in Two Mediterranean-Type Ecosystems
Cited by: 56
Author(s): Sven Buerki, Sarah Jose, Shrirang R. Yadav, Peter Goldblatt, John C. Manning, Félix Forest
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0028749

Biomic Specialization and Speciation Rates in Ruminants (Cetartiodactyla, Mammalia): A Test of the Resource-Use Hypothesis at the Global Scale
Cited by: 31
Author(s): Juan L. Cantalapiedra, Manuel Hérnandez Fernández, Jorge Morales
Software Mentions: 2
Published: about 13 years ago

10.1371/journal.pone.0163194

Diversification of Angraecum (Orchidaceae, Vandeae) in Madagascar: Revised Phylogeny Reveals Species Accumulation through Time Rather than Rapid Radiation
Cited by: 19
Author(s): Herinandrianina N. Andriananjamanantsoa, Shannon E. Engberg, Edward E. Louis, Luc Brouillet
Software Mentions: 2
Published: about 8 years ago

10.1093/aob/mcw160

The influence of habitat on the evolution of plants: a case study across Saxifragales
Cited by: 10
Author(s): Rafael Rubio de Casas, Mark E. Mort, Douglas E. Soltis
Software Mentions: 2
Published: over 8 years ago

Ecosyste.ms: Papers

Projects: cran: diversitree

Papers Mentioning diversitree 33