cran: KernSmooth | Projects | Ecosyste.ms: Papers

10.12688/f1000research.17824.2

Enhancing gene set enrichment using networks
Cited by: 2
Author(s): Michael Prummer
Software Mentions: 51
Published: over 5 years ago

10.1371/journal.pcbi.1000227

Analyzing ChIP-chip Data Using Bioconductor
Cited by: 19
Author(s): Joern Toedling, Wolfgang Huber
Software Mentions: 39
Published: about 16 years ago

Unsupervised identification of disease states from high‐dimensional physiological and histopathological profiles
Cited by: 11
Author(s): Kenichi Shimada, Timothy J. Mitchison
Software Mentions: 17
Published: almost 6 years ago

10.1371/journal.pone.0190195

Additional statistical and graphical methods for analyzing site formation processes using artifact orientations
Cited by: 39
Author(s): Shannon P. McPherron
Software Mentions: 9
Published: almost 7 years ago

10.1186/s12864-016-3300-3

Assessing characteristics of RNA amplification methods for single cell RNA sequencing
Cited by: 32
Author(s): Hannah Dueck, Rizi Ai, Adrian Camarena, Bo Ding, Reymundo Dominguez, Oleg V. Evgrafov, Jian–Bing Fan, Stephen Fisher, Jennifer Herstein, Tae Kyung Kim, Jae Mun Kim, Ming-Yi Lin, Rui Li, William J. Mack, Sean McGroty, Joseph Nguyen, Neeraj Salathia, Jamie Shallcross, Tade Souaiaia, Jennifer M. Spaethling, Christopher Walker, Jinhui Wang, Kai Wang, Wei Wang, André Wildberg, Lina Zheng, Robert H. Chow, James Eberwine, James A. Knowles, Kun Zhang, Junhyong Kim
Software Mentions: 7
Published: about 8 years ago

10.1186/s12942-018-0140-1

Stress experiences in neighborhood and social environments (SENSE): a pilot study to integrate the quantified self with citizen science to improve the built environment and health
Cited by: 49
Author(s): Benjamin W. Chrisinger, Abby C. King
Software Mentions: 6
Published: over 6 years ago

10.7717/peerj.5129

Assessing population changes of historically overexploited black corals (Order: Antipatharia) in Cozumel, Mexico
Cited by: 10
Author(s): Erika Gress, Dominic A. Andradi‐Brown
Software Mentions: 5
Published: over 6 years ago

10.1186/s13073-021-00938-3

The DNA methylation landscape of multiple myeloma shows extensive inter- and intrapatient heterogeneity that fuels transcriptomic variability
Cited by: 9
Author(s): Jennifer Derrien, Catherine Guérin‐Charbonnel, Victor Gaborit, Loı̈c Campion, Martine Devic, Elise Douillard, Nathalie Roi, Hervé Avet‐Loiseau, Olivier Decaux, Thierry Facon, Jan‐Philipp Mallm, Roland Eils, Nikhil C. Munshi, Philippe Moreau, Carl Herrmann, Florence Magrangeas, Stέphane Minvielle
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pgen.1008595

Super-resolution imaging of RAD51 and DMC1 in DNA repair foci reveals dynamic distribution patterns in meiotic prophase
Cited by: 22
Author(s): Johan A. Slotman, Maarten W. Paul, Fabrizia Carofiglio, H. Martijn de Gruiter, Tessa Vergroesen, Lieke Koornneef, Wiggert A. van Cappellen, Adriaan B. Houtsmuller, Willy M. Baarends
Software Mentions: 4
Published: over 4 years ago

10.1098/rsos.171359

Heart rate reveals torpor at high body temperatures in lowland tropical free-tailed bats
Cited by: 25
Author(s): M. Teague O’Mara, Sebastian Rikker, Martin Wikelski, A. Ter Maat, Henry S. Pollock, Dina K. N. Dechmann
Software Mentions: 4
Published: about 7 years ago

10.3389/fmicb.2018.02060

Local Functioning, Landscape Structuring: Drivers of Soil Microbial Community Structure and Function in Peatlands
Cited by: 6
Author(s): Sven Teurlincx, Amber Heijboer, Annelies J. Veraart, George A. Kowalchuk, Steven Declerck
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0131697

Spatial and Temporal Characteristics of Pastoral Mobility in the Far North Region, Cameroon: Data Analysis and Modeling
Cited by: 20
Author(s): Ningchuan Xiao, Shanshan Cai, Mark Moritz, Rebecca Garabed, Laura W. Pomeroy
Software Mentions: 4
Published: over 9 years ago

10.7554/eLife.26686

Cyclic bouts of extreme bradycardia counteract the high metabolism of frugivorous bats
Cited by: 39
Author(s): M. Teague O’Mara, Martin Wikelski, Christian C. Voigt, A. Ter Maat, Henry S. Pollock, Gary Burness, Lanna M. Desantis, Dina K. N. Dechmann
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0156641

Reef Fish Community Biomass and Trophic Structure Changes across Shallow to Upper-Mesophotic Reefs in the Mesoamerican Barrier Reef, Caribbean
Cited by: 48
Author(s): Dominic A. Andradi‐Brown, Erika Gress, Georgina Wright, Dan A. Exton, Alex D. Rogers
Software Mentions: 3
Published: over 8 years ago

10.1002/ece3.7444

A method to evaluate body length of live aquatic vertebrates using digital images
Cited by: 0
Author(s): Iván Arisméndi, Gwen W. Bury, Lauren Zatkos, Jeff Snyder, David Lindley
Software Mentions: 3
Published: over 3 years ago

10.1098/rsos.180835

Assessing mesophotic coral ecosystems inside and outside a Caribbean marine protected area
Cited by: 16
Author(s): Erika Gress, Maria J. Arroyo-Gerez, Georgina Wright, Dominic A. Andradi‐Brown
Software Mentions: 3
Published: about 6 years ago

10.1038/s41598-019-51188-8

Patterns of at-sea behaviour at a hybrid zone between two threatened seabirds
Cited by: 5
Author(s): Richard Austin, Russell B. Wynn, Stephen C. Votier, Clive N. Trueman, Miguel McMinn, Ana Rodríguez, Lavinia Suberg, Louise Maurice, Jason Newton, Meritxell Genovart, Clara Péron, David Grémillet, Tim Guilford
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0214535

Accounting for skill in trend, variability, and autocorrelation facilitates better multi-model projections: Application to the AMOC and temperature time series
Cited by: 3
Author(s): Roman Olson, Soon Il An, Yanan Fan, Jason P. Evans
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0209680

Flocking propensity by satellites, but not core members of mixed-species flocks, increases when individuals experience energetic deficits in a poor-quality foraging habitat
Cited by: 14
Author(s): Katherine E. Gentry, Daniel P. Roche, Stephen G. Mugel, Nolan D. Lancaster, Kathryn E. Sieving, Todd M. Freeberg, Jeffrey R. Lucas
Software Mentions: 2
Published: almost 6 years ago

10.1098/rspb.2016.0328

Spatial expansions and travelling waves of rabies in vampire bats
Cited by: 39
Author(s): Julio A. Benavides, William Valderrama, Daniel G. Streicker
Software Mentions: 2
Published: over 8 years ago

10.1037/pas0000091

From “aisle” to “labile”: A hierarchical National Adult Reading Test scale revealed by Mokken scaling.
Cited by: 8
Author(s): Sarah McGrory, Elizabeth Austin, Susan D. Shenkin, John M. Starr, Ian J. Deary
Software Mentions: 2
Published: over 9 years ago

10.1186/s12864-016-2582-9

Long genes and genes with multiple splice variants are enriched in pathways linked to cancer and other multigenic diseases
Cited by: 24
Author(s): Aleksandr B. Sahakyan, Shankar Balasubramanian
Software Mentions: 2
Published: almost 9 years ago

10.1186/1471-2148-10-36

A worldwide correlation of lactase persistence phenotype and genotypes
Cited by: 252
Author(s): Yuval Itan, Bryony Jones, Catherine J. E. Ingram, Dallas M. Swallow, Mark G. Thomas
Software Mentions: 2
Published: almost 15 years ago

10.1371/journal.pone.0168235

Assessing Caribbean Shallow and Mesophotic Reef Fish Communities Using Baited-Remote Underwater Video (BRUV) and Diver-Operated Video (DOV) Survey Techniques
Cited by: 44
Author(s): Dominic A. Andradi‐Brown, Consuelo Macaya-Solis, Dan A. Exton, Erika Gress, Georgina Wright, Alex D. Rogers
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pcbi.1003910

Putting Theory to the Test: Which Regulatory Mechanisms Can Drive Realistic Growth of a Root?
Cited by: 34
Author(s): Dirk De Vos, Kris Vissenberg, J. Broeckhove, Gerrit T.S. Beemster
Software Mentions: 2
Published: about 10 years ago

10.1002/ece3.2362

Heading for the hills? Evaluating spatial distribution of woodland caribou in response to a growing anthropogenic disturbance footprint
Cited by: 26
Author(s): Doug MacNearney, Karine E. Pigeon, Gordon B. Stenhouse, Wiebe Nijland, Nicholas C. Coops, Laura Finnegan
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pbio.2000841

Nonlatching positive feedback enables robust bimodality by decoupling expression noise from the mean
Cited by: 19
Author(s): Brandon S. Razooky, Youfang Cao, Maike M. K. Hansen, Alan S. Perelson, Michael L. Simpson, Leor S. Weinberger
Software Mentions: 2
Published: about 7 years ago

10.1186/s12874-016-0157-8

Comparison of non-parametric methods for ungrouping coarsely aggregated data
Cited by: 5
Author(s): Silvia Rizzi, Mikael Thinggaard, Gerda Engholm, N. E. Christensen, Tom Børge Johannesen, James W. Vaupel, Rune Lindahl-Jacobsen
Software Mentions: 2
Published: over 8 years ago

10.7759/cureus.14246

Prospective Randomized Controlled Pilot Study of High-Intensity Lightbox Phototherapy to Prevent ICU-Acquired Delirium Incidence
Cited by: 3
Author(s): Kermit Zhang, Tomer Pelleg, Shahzad Hussain, Venkateswara Kollipara, Anthony L. Loschner, Mahtab Foroozesh, Edmundo Rubio, Frank Biscardi, Susanti Ie
Software Mentions: 1
Published: over 3 years ago

10.1186/1471-2164-15-197

Genomic structure of nucleotide diversity among Lyon rat models of metabolic syndrome
Cited by: 12
Author(s): Man Chun John, Santosh S. Atanur, Timothy J. Aitman, Anne E. Kwitek
Software Mentions: 1
Published: almost 11 years ago

10.1038/s41598-019-51370-y

Habitat use and social mixing between groups of resident and augmented bighorn sheep
Cited by: 7
Author(s): Rusty Robinson, Jericho C. Whiting, Justin M. Shannon, Daniel D. Olson, Jerran T. Flinders, Tom S. Smith, R. Terry Bowyer
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0020589

Identification of Novel Schizophrenia Loci by Homozygosity Mapping Using DNA Microarray Analysis
Cited by: 20
Author(s): Naohiro Kurotaki, Shinya Tasaki, Hiroyuki Mishima, Shinji Ono, Akira Imamura, Taeko Kikuchi, Nao Nishida, Katsushi Tokunaga, Koh-ichiro Yoshiura, Hiroki Ozawa
Software Mentions: 1
Published: over 13 years ago

10.1186/s40462-019-0174-4

Sympatric Atlantic puffins and razorbills show contrasting responses to adverse marine conditions during winter foraging within the North Sea
Cited by: 15
Author(s): Katie St John Glew, Sarah Wanless, Michael Harris, Francis Daunt, Kjell Einar Erikstad, Hallvard Strøm, John R. Speakman, Benjamin Kürten, Clive N. Trueman
Software Mentions: 1
Published: about 5 years ago

10.3389/fpls.2017.01798

A High-Density Genetic Map of Wild Emmer Wheat from the Karaca Dağ Region Provides New Evidence on the Structure and Evolution of Wheat Chromosomes
Cited by: 29
Author(s): Chad M. Jorgensen, Ming‐Cheng Luo, Ramesh Ramasamy, Mathew Dawson, Bikram S. Gill, Abraham B. Korol, Assaf Distelfeld, Jan Dvořák
Software Mentions: 1
Published: about 7 years ago

Ecosyste.ms: Papers

Projects: cran: KernSmooth

Papers Mentioning KernSmooth 34