cran: profile | Projects | Ecosyste.ms: Papers

10.1186/s13100-019-0156-5

Subtype classification and functional annotation of L1Md retrotransposon promoters
Cited by: 15
Author(s): Meng Zhou, Andrew D. Smith
Software Mentions: 6
Published: over 5 years ago

10.12688/wellcomeopenres.15115.1

Single-cell transcriptome analysis of CD8+ T-cell memory inflation
Cited by: 7
Author(s): Andrew J. Highton, Madeleine E Zinser, Lian Ni Lee, Claire Hutchings, Catherine de Lara, Chansavath Phetsouphanh, Christian Willberg, Claire L. Gordon, Paul Klenerman, Emanuele Marchi
Software Mentions: 6
Published: over 5 years ago

10.7150/ijms.49053

Comprehensive analysis of TPX2-related ceRNA network as prognostic biomarkers in lung adenocarcinoma
Cited by: 6
Author(s): Huo Chen, Meng-Yu Zhang, Rui Li, Xi-Jia Zhou, Liu T, Jianping Li, Xiao Liu, Yi-Qing Qu
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0166358

Accelerating Information Retrieval from Profile Hidden Markov Model Databases
Cited by: 0
Author(s): A. Faleh Tamimi, Yaqoub Ashhab, Hashem Tamimi
Software Mentions: 4
Published: almost 8 years ago

10.1155/2021/1814266

Gene Model Related to m6A Predicts the Prognostic Effect of Immune Infiltration on Head and Neck Squamous Cell Carcinoma
Cited by: 3
Author(s): Yaxiong Deng, Kehua Li, Fengwu Tan, Hanbo Liu
Software Mentions: 4
Published: about 3 years ago

10.1186/s12967-021-02846-x

Eleven immune-gene pairs signature associated with TP53 predicting the overall survival of gastric cancer: a retrospective analysis of large sample and multicenter from public database
Cited by: 9
Author(s): Junyu Huo, Liqun Wu, Yunjin Zang
Software Mentions: 4
Published: over 3 years ago

10.3390/biom11081133

TCMacro: A Simple and Robust ImageJ-Based Method for Automated Measurement of Tail Coiling Activity in Zebrafish
Cited by: 2
Author(s): Kevin Adi Kurnia, Fiorency Santoso, Bonifasius Putera Sampurna, Gilbert Audira, Jong-Chin Huang, Kelvin H.‐C. Chen, Chung-Der Hsiao
Software Mentions: 3
Published: about 3 years ago

10.2174/138920209789177575

Hidden Markov Models and their Applications in Biological Sequence Analysis
Cited by: 247
Author(s): Byung-Jun Yoon
Software Mentions: 3
Published: about 15 years ago

10.1099/mgen.0.000080

Metagenomic data-mining reveals contrasting microbial populations responsible for trimethylamine formation in human gut and marine ecosystems
Cited by: 34
Author(s): Eleanor Jameson, Andrew C. Doxey, Ruth L. Airs, Kevin J. Purdy, J. Colin Murrell, Yin Chen
Software Mentions: 3
Published: almost 8 years ago

10.1186/1471-2164-14-818

Exploration of the gene fusion landscape of glioblastoma using transcriptome sequencing and copy number data
Cited by: 67
Author(s): Nameeta Shah, Michael Lankerovich, Hwahyung Lee, Jae-Geun Yoon, Brett Schroeder, Greg Foltz
Software Mentions: 3
Published: over 11 years ago

10.1371/journal.pone.0154122

Genome Assembly of the Fungus Cochliobolus miyabeanus, and Transcriptome Analysis during Early Stages of Infection on American Wildrice (Zizania palustris L.)
Cited by: 10
Author(s): Claudia V. Castell-Miller, Juan J. Gutiérrez-González, Zheng Jin Tu, Kathryn E. Bushley, Matthieu Hainaut, Bernard Henrissat, Deborah A. Samac
Software Mentions: 3
Published: over 8 years ago

10.1186/1471-2105-11-115

Automatic prediction of catalytic residues by modeling residue structural neighborhood
Cited by: 17
Author(s): Elisa Cilia, Andrea Passerini
Software Mentions: 2
Published: over 14 years ago

10.1186/s12866-020-01763-1

Protein–protein interaction of Rv0148 with Htdy and its predicted role towards drug resistance in Mycobacterium tuberculosis
Cited by: 3
Author(s): Gunapati Bhargavi, Sameer Hassan, S. Balaji, Srikanth Tripathy, Kannan Palaniyandi
Software Mentions: 2
Published: over 4 years ago

10.1093/bioinformatics/bts578

Adding unaligned sequences into an existing alignment using MAFFT and LAST
Cited by: 184
Author(s): Kazutaka Katoh, Martin C. Frith
Software Mentions: 2
Published: almost 12 years ago

10.1016/j.ymeth.2018.03.012

Methodological considerations for the identification of choline and carnitine-degrading bacteria in the gut
Cited by: 32
Author(s): Eleanor Jameson, Mussa Quareshy, Yin Chen
Software Mentions: 2
Published: almost 6 years ago

10.3390/s18061709

Performance Evaluation of Energy-Autonomous Sensors Using Power-Harvesting Beacons for Environmental Monitoring in Internet of Things (IoT)
Cited by: 18
Author(s): George Moiş, Teodora Sanislav, Silviu Folea, Sherali Zeadally
Software Mentions: 2
Published: over 6 years ago

10.7448/IAS.19.8.21487

International Congress of Drug Therapy in HIV Infection 23-26 October 2016, Glasgow, UK
Cited by: 12
Author(s):
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pntd.0008396

The macrophage microtubule network acts as a key cellular controller of the intracellular fate of Leishmania infantum
Cited by: 1
Author(s): Sandrine Cojean, Valérie Nicolas, Vanessa Liévin-Le Moal
Software Mentions: 1
Published: about 4 years ago

10.1002/ece3.3552

Colorful seashells: Identification of haem pathway genes associated with the synthesis of porphyrin shell color in marine snails
Cited by: 28
Author(s): Suzanne T. Williams, Anne E. Lockyer, Patricia Dyal, Tomoyuki Nakano, Celia K. C. Churchill, Daniel I. Speiser
Software Mentions: 1
Published: almost 7 years ago

10.3389/fpsyg.2019.01820

Impact of Physical Exercise on Symptoms of Depression and Anxiety in Pre-adolescents: A Pilot Randomized Trial
Cited by: 18
Author(s): Arnaud Philippot, Alexandre Meerschaut, Laura Danneaux, Gauthier Smal, Yannick Bleyenheuft, Anne De Volder
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-017-12295-6

Neurons define non-myelinated axon segments by the regulation of galectin-4-containing axon membrane domains
Cited by: 23
Author(s): Natalia Díez-Revuelta, Alonso M. Higuero, Silvia Velasco, María Peñas-de-la-Iglesia, Hans‐Joachim Gabius, José Abad‐Rodríguez
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-020-78018-6

Identification and functional characterization of ABCC transporters for Cd tolerance and accumulation in Sedum alfredii Hance
Cited by: 11
Author(s): Tongyu Feng, Xuelian He, Renying Zhuo, Guirong Qiao, Xiaojiao Han, Wenmin Qiu, Linfeng Chi, Dayi Zhang, Mingying Liu
Software Mentions: 1
Published: almost 4 years ago

10.1128/JVI.01714-20

Specific Interaction of Novel<i>Friunavirus</i>Phages Encoding Tailspike Depolymerases with Corresponding Acinetobacter baumannii Capsular Types
Cited by: 30
Author(s): Anastasiya V. Popova, Mikhail M. Shneider, Nikolay P. Arbatsky, Anastasiya A. Kasimova, Sof’ya N. Senchenkova, Alexander S. Shashkov, Andrey S. Dmitrenok, Alexander O. Chizhov, Yu. V. Mikhaǐlova, Dmitry A. Shagin, Olga S. Sokolova, Olga Y. Timoshina, Roman Kozlov, Konstantin A. Miroshnikov, Yuriy A. Knirel
Software Mentions: 1
Published: over 3 years ago

10.1186/1751-0473-3-8

Analysis by siRNA_profile program displays novel thermodynamic characteristics of highly functional siRNA molecules
Cited by: 6
Author(s): Pirkko Muhonen, R. Parthasarathy, Anthony J. Janckila, Kálmán G. Büki, H. Kalervo Väänänen
Software Mentions: 1
Published: over 16 years ago

10.1038/s41396-018-0304-9

Uneven distribution of cobamide biosynthesis and dependence in bacteria predicted by comparative genomics
Cited by: 135
Author(s): Amanda N. Shelton, Erica C. Seth, Kenny C. Mok, Andrew Han, Samantha N. Jackson, David R. Haft, Michiko E. Taga
Software Mentions: 1
Published: almost 6 years ago

10.3390/v9070188

Novel Fri1-like Viruses Infecting Acinetobacter baumannii—vB_AbaP_AS11 and vB_AbaP_AS12—Characterization, Comparative Genomic Analysis, and Host-Recognition Strategy.
Cited by: 33
Author(s): Anastasiya V. Popova, Daria Lavysh, Evgeny Klimuk, Mikhail V. Edelstein, А. Г. Богун, Mikhail M. Shneider, А. Е. Гончаров, Sergey Leonov, Konstantin Severinov
Software Mentions: 1
Published: about 7 years ago

10.1186/s12859-019-2818-1

GRASP2: fast and memory-efficient gene-centric assembly and homolog search for metagenomic sequencing data
Cited by: 5
Author(s): Cuncong Zhong, Youngik Yang, Shibu Yooseph
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms21041304

Genomics-Enabled Analysis of Puroindoline b2 Genes Identifies New Alleles in Wheat and Related Triticeae Species
Cited by: 3
Author(s): Xiaoyan Li, Yin Li, Xiao‐Lan Yu, Feng Sun, Guangxiao Yang, Guoqing He
Software Mentions: 1
Published: over 4 years ago

10.1155/2015/131926

Compressed Sensing for fMRI: Feasibility Study on the Acceleration of Non-EPI fMRI at 9.4T
Cited by: 4
Author(s): Paul Kyu Han, Sung‐Hong Park, Seong Gi Kim, Jong Chul Ye
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0112240

Peritoneal Tumor Carcinomatosis: Pharmacological Targeting with Hyaluronan-Based Bioconjugates Overcomes Therapeutic Indications of Current Drugs
Cited by: 12
Author(s): Isabella Monia Montagner, Anna Merlo, Gaia Zuccolotto, Davide Renier, Manuela Campisi, Gianfranco Pasut, Paola Zanovello, Antonio Rosato
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0039044

Apparent Ploidy Effects on Silencing Are Post-Transcriptional at HML and Telomeres in Saccharomyces cerevisiae
Cited by: 3
Author(s): Jenny M. McLaughlan, Gianni Liti, Sarah Sharp, Agnieszka Maslowska, Edward J. Louis
Software Mentions: 1
Published: about 12 years ago

Ecosyste.ms: Papers

Projects: cran: profile

Papers Mentioning profile 32